RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 WDR17Q8IZU2 1322 aa17.93■□□□□ 0.46
VRK3-217ENST00000599538 AIMP1Q12904 312 aaKnown RBP17.93■□□□□ 0.46
VRK3-217ENST00000599538 PPP1R42Q7Z4L9 355 aa17.93■□□□□ 0.46
VRK3-217ENST00000599538 DCAF5Q96JK2 942 aa17.93■□□□□ 0.46
VRK3-217ENST00000599538 CHMP4AQ9BY43 222 aa17.93■□□□□ 0.46
VRK3-217ENST00000599538 IBTKQ9P2D0 1353 aaPredicted RBP17.93■□□□□ 0.46
VRK3-217ENST00000599538 CWF19L2Q2TBE0 894 aaKnown RBP17.92■□□□□ 0.46
VRK3-217ENST00000599538 SLKQ9H2G2 1235 aaPredicted RBP17.92■□□□□ 0.46
VRK3-217ENST00000599538 COL5A2P05997 1499 aaPredicted RBP17.92■□□□□ 0.46
VRK3-217ENST00000599538 PIP4K2AP48426 406 aaPredicted RBP17.92■□□□□ 0.46
VRK3-217ENST00000599538 PDE1AP54750 535 aa17.92■□□□□ 0.46
VRK3-217ENST00000599538 KSR2Q6VAB6 950 aa17.92■□□□□ 0.46
VRK3-217ENST00000599538 SSH3Q8TE77 659 aa17.92■□□□□ 0.46
VRK3-217ENST00000599538 KIF2CQ99661 725 aa17.92■□□□□ 0.46
VRK3-217ENST00000599538 LRRCC1Q9C099 1032 aa17.92■□□□□ 0.46
VRK3-217ENST00000599538 DDX21Q9NR30 783 aaKnown RBP eCLIP17.92■□□□□ 0.46
VRK3-217ENST00000599538 SALL3Q9BXA9 1300 aa17.92■□□□□ 0.46
VRK3-217ENST00000599538 USP16Q9Y5T5 823 aa17.91■□□□□ 0.46
VRK3-217ENST00000599538 ABCA3Q99758 1704 aa17.91■□□□□ 0.46
VRK3-217ENST00000599538 MYL6BP14649 208 aa17.9■□□□□ 0.46
VRK3-217ENST00000599538 STRN4Q9NRL3 753 aa17.9■□□□□ 0.46
VRK3-217ENST00000599538 HYPKQ9NX55 129 aa17.9■□□□□ 0.46
VRK3-217ENST00000599538 MRC1P22897 1456 aa17.9■□□□□ 0.46
VRK3-217ENST00000599538 POLA2Q14181 598 aa17.9■□□□□ 0.46
VRK3-217ENST00000599538 NFKBIBQ15653 356 aa17.9■□□□□ 0.46
VRK3-217ENST00000599538 SPRYD3Q8NCJ5 442 aa17.9■□□□□ 0.46
VRK3-217ENST00000599538 LARP1Q6PKG0 1096 aaKnown RBP17.89■□□□□ 0.45
VRK3-217ENST00000599538 OSBPL3Q9H4L5 887 aa17.89■□□□□ 0.45
VRK3-217ENST00000599538 IL1RAPL2Q9NP60 686 aa17.89■□□□□ 0.45
VRK3-217ENST00000599538 SRGAP3O43295 1099 aa17.89■□□□□ 0.45
VRK3-217ENST00000599538 RTL5Q5HYW3 569 aaPredicted RBP17.89■□□□□ 0.45
VRK3-217ENST00000599538 CABP4P57796 275 aa17.88■□□□□ 0.45
VRK3-217ENST00000599538 ANTXR1Q9H6X2 564 aa17.88■□□□□ 0.45
VRK3-217ENST00000599538 SURF6O75683 361 aaKnown RBP17.87■□□□□ 0.45
VRK3-217ENST00000599538 ZCRB1Q8TBF4 217 aaKnown RBP17.87■□□□□ 0.45
VRK3-217ENST00000599538 LRP10Q7Z4F1 713 aa17.87■□□□□ 0.45
VRK3-217ENST00000599538 RBM42Q9BTD8 480 aaKnown RBP17.87■□□□□ 0.45
VRK3-217ENST00000599538 NHSL1Q5SYE7 1610 aa17.87■□□□□ 0.45
VRK3-217ENST00000599538 TTC5Q8N0Z6 440 aa17.86■□□□□ 0.45
VRK3-217ENST00000599538 XAGE3Q8WTP9 111 aa17.86■□□□□ 0.45
VRK3-217ENST00000599538 HSP90AB1P08238 724 aaKnown RBP17.86■□□□□ 0.45
VRK3-217ENST00000599538 MX1P20591 662 aa17.86■□□□□ 0.45
VRK3-217ENST00000599538 COPS6Q7L5N1 327 aa17.86■□□□□ 0.45
VRK3-217ENST00000599538 C9orf78Q9NZ63 289 aaPredicted RBP17.86■□□□□ 0.45
VRK3-217ENST00000599538 PLEKHG2Q9H7P9 1386 aa17.85■□□□□ 0.45
VRK3-217ENST00000599538 ALDH1L1O75891 902 aa17.85■□□□□ 0.45
VRK3-217ENST00000599538 IGKV5-2P06315 115 aa17.85■□□□□ 0.45
VRK3-217ENST00000599538 SNRPA1P09661 255 aaKnown RBP17.85■□□□□ 0.45
VRK3-217ENST00000599538 CARD10Q9BWT7 1032 aa17.85■□□□□ 0.45
VRK3-217ENST00000599538 USP35Q9P2H5 1018 aa17.85■□□□□ 0.45
VRK3-217ENST00000599538 PARP4Q9UKK3 1724 aaKnown RBP17.85■□□□□ 0.45
VRK3-217ENST00000599538 CD2BP2O95400 341 aaKnown RBP17.84■□□□□ 0.45
VRK3-217ENST00000599538 NUTM1Q86Y26 1132 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 LINS1Q8NG48 757 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 DDX54Q8TDD1 881 aaKnown RBP17.84■□□□□ 0.45
VRK3-217ENST00000599538 KAZALD1Q96I82 304 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 FMNL2Q96PY5 1086 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 PCDH11XQ9BZA7 1347 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 PCDH11YQ9BZA8 1340 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 GLI3P10071 1580 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 FRAT2O75474 233 aaPredicted RBP17.84■□□□□ 0.45
VRK3-217ENST00000599538 IL2RBP14784 551 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 RIC3Q7Z5B4 369 aa17.84■□□□□ 0.45
VRK3-217ENST00000599538 EVA1CP58658 441 aa17.83■□□□□ 0.45
VRK3-217ENST00000599538 RHPN1Q8TCX5 695 aa17.83■□□□□ 0.45
VRK3-217ENST00000599538 TUBGCP6Q96RT7 1819 aa17.83■□□□□ 0.45
VRK3-217ENST00000599538 DDX58O95786 925 aaKnown RBP17.83■□□□□ 0.44
VRK3-217ENST00000599538 UNC5CLQ8IV45 518 aa17.83■□□□□ 0.44
VRK3-217ENST00000599538 SUCLG2Q96I99 432 aa17.83■□□□□ 0.44
VRK3-217ENST00000599538 USP26Q9BXU7 913 aa17.82■□□□□ 0.44
VRK3-217ENST00000599538 PA2G4Q9UQ80 394 aaKnown RBP17.82■□□□□ 0.44
VRK3-217ENST00000599538 SHANK3Q9BYB0 1731 aa17.81■□□□□ 0.44
VRK3-217ENST00000599538 GRM8O00222 908 aa17.81■□□□□ 0.44
VRK3-217ENST00000599538 MTX1Q13505 466 aa17.81■□□□□ 0.44
VRK3-217ENST00000599538 STAP2Q9UGK3 403 aa17.81■□□□□ 0.44
VRK3-217ENST00000599538 RAB11FIP3O75154 756 aa17.8■□□□□ 0.44
VRK3-217ENST00000599538 HSCBQ8IWL3 235 aa17.8■□□□□ 0.44
VRK3-217ENST00000599538 MYD88Q99836 296 aa17.8■□□□□ 0.44
VRK3-217ENST00000599538 NEURL1BA8MQ27 555 aa17.8■□□□□ 0.44
VRK3-217ENST00000599538 JARID2Q92833 1246 aaPredicted RBP17.8■□□□□ 0.44
VRK3-217ENST00000599538 SNX21Q969T3 373 aa17.8■□□□□ 0.44
VRK3-217ENST00000599538 BICC1Q9H694 974 aaKnown RBP17.8■□□□□ 0.44
VRK3-217ENST00000599538 BTG4Q9NY30 223 aa17.8■□□□□ 0.44
VRK3-217ENST00000599538 UTYO14607 1347 aa17.79■□□□□ 0.44
VRK3-217ENST00000599538 DEKP35659 375 aaKnown RBP17.79■□□□□ 0.44
VRK3-217ENST00000599538 NKX1-1Q15270 411 aaPredicted RBP17.79■□□□□ 0.44
VRK3-217ENST00000599538 ANKRD13DQ6ZTN6 518 aa17.79■□□□□ 0.44
VRK3-217ENST00000599538 RILPL2Q969X0 211 aa17.79■□□□□ 0.44
VRK3-217ENST00000599538 KIF1BPQ96EK5 621 aa17.79■□□□□ 0.44
VRK3-217ENST00000599538 NBPF26B4DH59 902 aa17.78■□□□□ 0.44
VRK3-217ENST00000599538 NBPF14Q5TI25 921 aa17.78■□□□□ 0.44
VRK3-217ENST00000599538 NBPF10Q6P3W6 841 aaKnown RBP17.78■□□□□ 0.44
VRK3-217ENST00000599538 NBPF15Q8N660 670 aa17.78■□□□□ 0.44
VRK3-217ENST00000599538 METTL22Q9BUU2 404 aaPredicted RBP17.78■□□□□ 0.44
VRK3-217ENST00000599538 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.78■□□□□ 0.44
VRK3-217ENST00000599538 TRIM6-TRIM34B2RNG4 842 aa17.78■□□□□ 0.44
VRK3-217ENST00000599538 PTCD1O75127 700 aaKnown RBP17.78■□□□□ 0.44
VRK3-217ENST00000599538 ERVV-2B6SEH9 535 aa17.77■□□□□ 0.44
VRK3-217ENST00000599538 MAP4K4O95819 1239 aaPredicted RBP17.77■□□□□ 0.44
VRK3-217ENST00000599538 GCKRQ14397 625 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms