RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 UBR2Q8IWV8 1755 aa13.1□□□□□ -0.31
VRK3-216ENST00000599342 FCHSD2O94868 740 aa13.1□□□□□ -0.31
VRK3-216ENST00000599342 U2AF1L5P0DN76 240 aaPredicted RBP13.1□□□□□ -0.31
VRK3-216ENST00000599342 CANXP27824 592 aaKnown RBP13.1□□□□□ -0.31
VRK3-216ENST00000599342 U2AF1Q01081 240 aaKnown RBP eCLIP13.1□□□□□ -0.31
VRK3-216ENST00000599342 DDR1Q08345 913 aa13.1□□□□□ -0.31
VRK3-216ENST00000599342 ZNF790Q6PG37 636 aa13.1□□□□□ -0.31
VRK3-216ENST00000599342 IL17REQ8NFR9 667 aa13.1□□□□□ -0.31
VRK3-216ENST00000599342 ZNF526Q8TF50 670 aaPredicted RBP13.1□□□□□ -0.31
VRK3-216ENST00000599342 NARFQ9UHQ1 456 aa13.1□□□□□ -0.31
VRK3-216ENST00000599342 HEG1Q9ULI3 1381 aa13.09□□□□□ -0.31
VRK3-216ENST00000599342 POLRMTO00411 1230 aaKnown RBP13.09□□□□□ -0.31
VRK3-216ENST00000599342 RTF1Q92541 710 aaKnown RBP13.09□□□□□ -0.31
VRK3-216ENST00000599342 TEX13AQ9BXU3 409 aaPredicted RBP13.09□□□□□ -0.31
VRK3-216ENST00000599342 CEMIPQ8WUJ3 1361 aa13.08□□□□□ -0.31
VRK3-216ENST00000599342 ARHGAP27Q6ZUM4 889 aa13.08□□□□□ -0.32
VRK3-216ENST00000599342 ZNF496Q96IT1 587 aaPredicted RBP13.08□□□□□ -0.32
VRK3-216ENST00000599342 PHACTR3Q96KR7 559 aa13.08□□□□□ -0.32
VRK3-216ENST00000599342 FMNL2Q96PY5 1086 aa13.08□□□□□ -0.32
VRK3-216ENST00000599342 PIM2Q9P1W9 311 aa13.08□□□□□ -0.32
VRK3-216ENST00000599342 A0A087WZG4 1122 aa13.07□□□□□ -0.32
VRK3-216ENST00000599342 BTBD11A6QL63 1104 aa13.07□□□□□ -0.32
VRK3-216ENST00000599342 TM4SF1P30408 202 aa13.07□□□□□ -0.32
VRK3-216ENST00000599342 NPM2Q86SE8 214 aaKnown RBP13.07□□□□□ -0.32
VRK3-216ENST00000599342 ZNF330Q9Y3S2 320 aaPredicted RBP13.07□□□□□ -0.32
VRK3-216ENST00000599342 NEFMP07197 916 aa13.06□□□□□ -0.32
VRK3-216ENST00000599342 NFIXQ14938 502 aa13.06□□□□□ -0.32
VRK3-216ENST00000599342 DALRD3Q5D0E6 543 aaKnown RBP13.06□□□□□ -0.32
VRK3-216ENST00000599342 SIPA1L3O60292 1781 aaPredicted RBP13.06□□□□□ -0.32
VRK3-216ENST00000599342 KCNA3P22001 575 aa13.05□□□□□ -0.32
VRK3-216ENST00000599342 CHRNA5P30532 468 aa13.05□□□□□ -0.32
VRK3-216ENST00000599342 EIF5P55010 431 aaKnown RBP13.05□□□□□ -0.32
VRK3-216ENST00000599342 BRCA1P38398 1863 aaKnown RBP13.05□□□□□ -0.32
VRK3-216ENST00000599342 SERPINB2P05120 415 aa13.04□□□□□ -0.32
VRK3-216ENST00000599342 BCL2L12Q9HB09 334 aa13.04□□□□□ -0.32
VRK3-216ENST00000599342 IL6STP40189 918 aaPredicted RBP13.03□□□□□ -0.32
VRK3-216ENST00000599342 BICDL1Q6ZP65 573 aa13.03□□□□□ -0.32
VRK3-216ENST00000599342 MCM10Q7L590 875 aa13.03□□□□□ -0.32
VRK3-216ENST00000599342 ARFGEF1Q9Y6D6 1849 aa13.03□□□□□ -0.32
VRK3-216ENST00000599342 SCN7AQ01118 1682 aa13.02□□□□□ -0.32
VRK3-216ENST00000599342 NRXN2Q9P2S2 1712 aa13.02□□□□□ -0.32
VRK3-216ENST00000599342 KCNQ3O43525 872 aa13.02□□□□□ -0.33
VRK3-216ENST00000599342 HTATSF1O43719 755 aaKnown RBP13.02□□□□□ -0.33
VRK3-216ENST00000599342 A1BGP04217 495 aa13.02□□□□□ -0.33
VRK3-216ENST00000599342 TBC1D2BQ9UPU7 963 aa13.02□□□□□ -0.33
VRK3-216ENST00000599342 AFDNP55196 1824 aaKnown RBP13.02□□□□□ -0.33
VRK3-216ENST00000599342 NPHP1O15259 732 aa13.01□□□□□ -0.33
VRK3-216ENST00000599342 SNRPA1P09661 255 aaKnown RBP13.01□□□□□ -0.33
VRK3-216ENST00000599342 DCTN1Q14203 1278 aa13.01□□□□□ -0.33
VRK3-216ENST00000599342 C9orf131Q5VYM1 1079 aa13.01□□□□□ -0.33
VRK3-216ENST00000599342 TBC1D9BQ66K14 1250 aa13.01□□□□□ -0.33
VRK3-216ENST00000599342 CARMIL3Q8ND23 1372 aa13.01□□□□□ -0.33
VRK3-216ENST00000599342 H0YIN7 160 aa13□□□□□ -0.33
VRK3-216ENST00000599342 C2CD5Q86YS7 1000 aa13□□□□□ -0.33
VRK3-216ENST00000599342 KIF3CO14782 793 aa12.99□□□□□ -0.33
VRK3-216ENST00000599342 TAF7Q15545 349 aaPredicted RBP12.99□□□□□ -0.33
VRK3-216ENST00000599342 DZIP3Q86Y13 1208 aaKnown RBP12.99□□□□□ -0.33
VRK3-216ENST00000599342 PNNQ9H307 717 aaKnown RBP12.99□□□□□ -0.33
VRK3-216ENST00000599342 RNF181Q9P0P0 153 aa12.99□□□□□ -0.33
VRK3-216ENST00000599342 USP16Q9Y5T5 823 aa12.99□□□□□ -0.33
VRK3-216ENST00000599342 MAPK8IP3Q9UPT6 1336 aa12.98□□□□□ -0.33
VRK3-216ENST00000599342 CAMTA2O94983 1202 aa12.98□□□□□ -0.33
VRK3-216ENST00000599342 TTLL6Q8N841 843 aa12.98□□□□□ -0.33
VRK3-216ENST00000599342 SETDB2Q96T68 719 aa12.98□□□□□ -0.33
VRK3-216ENST00000599342 PDZRN3Q9UPQ7 1066 aa12.98□□□□□ -0.33
VRK3-216ENST00000599342 ZNF652Q9Y2D9 606 aa12.98□□□□□ -0.33
VRK3-216ENST00000599342 DLEC1Q9Y238 1755 aa12.97□□□□□ -0.33
VRK3-216ENST00000599342 PRAMEF22A3QJZ6 481 aa12.97□□□□□ -0.33
VRK3-216ENST00000599342 HSPA6P17066 643 aa12.97□□□□□ -0.33
VRK3-216ENST00000599342 PDE6BP35913 854 aa12.97□□□□□ -0.33
VRK3-216ENST00000599342 PIP4K2AP48426 406 aaPredicted RBP12.97□□□□□ -0.33
VRK3-216ENST00000599342 ST5P78524 1137 aa12.97□□□□□ -0.33
VRK3-216ENST00000599342 CNBD1Q8NA66 436 aa12.97□□□□□ -0.33
VRK3-216ENST00000599342 PNISRQ8TF01 805 aaKnown RBP12.97□□□□□ -0.33
VRK3-216ENST00000599342 BCORQ6W2J9 1755 aa12.97□□□□□ -0.33
VRK3-216ENST00000599342 KDM2BQ8NHM5 1336 aa12.96□□□□□ -0.33
VRK3-216ENST00000599342 RASSF7Q02833 373 aa12.96□□□□□ -0.33
VRK3-216ENST00000599342 PRR5LQ6MZQ0 368 aa12.96□□□□□ -0.33
VRK3-216ENST00000599342 C16orf71Q8IYS4 520 aaPredicted RBP12.96□□□□□ -0.33
VRK3-216ENST00000599342 ZNF622Q969S3 477 aaKnown RBP eCLIP12.96□□□□□ -0.33
VRK3-216ENST00000599342 BRIP1Q9BX63 1249 aa12.96□□□□□ -0.33
VRK3-216ENST00000599342 TOMM70O94826 608 aa12.95□□□□□ -0.34
VRK3-216ENST00000599342 RALBP1Q15311 655 aa12.95□□□□□ -0.34
VRK3-216ENST00000599342 NFE2L2Q16236 605 aa12.95□□□□□ -0.34
VRK3-216ENST00000599342 CLEC4GQ6UXB4 293 aa12.95□□□□□ -0.34
VRK3-216ENST00000599342 CCDC24Q8N4L8 307 aa12.95□□□□□ -0.34
VRK3-216ENST00000599342 PLEKHF1Q96S99 279 aa12.95□□□□□ -0.34
VRK3-216ENST00000599342 NMRK2Q9NPI5 230 aa12.95□□□□□ -0.34
VRK3-216ENST00000599342 MIS18AQ9NYP9 233 aa12.95□□□□□ -0.34
VRK3-216ENST00000599342 ZC3H4Q9UPT8 1303 aaKnown RBP12.94□□□□□ -0.34
VRK3-216ENST00000599342 LMNB1P20700 586 aa12.94□□□□□ -0.34
VRK3-216ENST00000599342 NBPF5PQ86XG9 351 aaPredicted RBP12.93□□□□□ -0.34
VRK3-216ENST00000599342 LAMB4A4D0S4 1761 aa12.93□□□□□ -0.34
VRK3-216ENST00000599342 DLG5Q8TDM6 1919 aa12.93□□□□□ -0.34
VRK3-216ENST00000599342 ANKRD31Q8N7Z5 1873 aa12.93□□□□□ -0.34
VRK3-216ENST00000599342 NBPF26B4DH59 902 aa12.92□□□□□ -0.34
VRK3-216ENST00000599342 RGL2O15211 777 aa12.92□□□□□ -0.34
VRK3-216ENST00000599342 NBPF10Q6P3W6 841 aaKnown RBP12.92□□□□□ -0.34
VRK3-216ENST00000599342 NBPF15Q8N660 670 aa12.92□□□□□ -0.34
VRK3-216ENST00000599342 CNKSR1Q969H4 720 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms