RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 LMOD3Q0VAK6 560 aa18.64■□□□□ 0.57
LIG1-218ENST00000599322 ZNF496Q96IT1 587 aaPredicted RBP18.64■□□□□ 0.57
LIG1-218ENST00000599322 PRKRIP1Q9H875 184 aaPredicted RBP18.64■□□□□ 0.57
LIG1-218ENST00000599322 PARP3Q9Y6F1 533 aa18.64■□□□□ 0.57
LIG1-218ENST00000599322 ADAMTS7Q9UKP4 1686 aa18.63■□□□□ 0.57
LIG1-218ENST00000599322 A0A087WZG4 1122 aa18.63■□□□□ 0.57
LIG1-218ENST00000599322 GIGYF1O75420 1035 aaPredicted RBP18.63■□□□□ 0.57
LIG1-218ENST00000599322 MMP10P09238 476 aa18.63■□□□□ 0.57
LIG1-218ENST00000599322 INTS5Q6P9B9 1019 aaKnown RBP18.63■□□□□ 0.57
LIG1-218ENST00000599322 HEG1Q9ULI3 1381 aa18.63■□□□□ 0.57
LIG1-218ENST00000599322 CANXP27824 592 aaKnown RBP18.62■□□□□ 0.57
LIG1-218ENST00000599322 DCTN1Q14203 1278 aa18.62■□□□□ 0.57
LIG1-218ENST00000599322 PLEKHF1Q96S99 279 aa18.62■□□□□ 0.57
LIG1-218ENST00000599322 BRCA1P38398 1863 aaKnown RBP18.62■□□□□ 0.57
LIG1-218ENST00000599322 ATP10DQ9P241 1426 aa18.61■□□□□ 0.57
LIG1-218ENST00000599322 TJP1Q07157 1748 aa18.6■□□□□ 0.57
LIG1-218ENST00000599322 SNRPA1P09661 255 aaKnown RBP18.6■□□□□ 0.57
LIG1-218ENST00000599322 GYS1P13807 737 aa18.6■□□□□ 0.57
LIG1-218ENST00000599322 RIPK4P57078 832 aa18.6■□□□□ 0.57
LIG1-218ENST00000599322 ZNF330Q9Y3S2 320 aaPredicted RBP18.6■□□□□ 0.57
LIG1-218ENST00000599322 KCPQ6ZWJ8 1503 aa18.59■□□□□ 0.57
LIG1-218ENST00000599322 ADCY9O60503 1353 aa18.59■□□□□ 0.57
LIG1-218ENST00000599322 SOS1Q07889 1333 aaPredicted RBP18.59■□□□□ 0.57
LIG1-218ENST00000599322 USP42Q9H9J4 1324 aaKnown RBP18.59■□□□□ 0.57
LIG1-218ENST00000599322 WWC3Q9ULE0 1092 aa18.59■□□□□ 0.57
LIG1-218ENST00000599322 ZBTB1Q9Y2K1 713 aa18.59■□□□□ 0.57
LIG1-218ENST00000599322 CICQ96RK0 1608 aaPredicted RBP18.59■□□□□ 0.57
LIG1-218ENST00000599322 ANP32CO43423 234 aa18.58■□□□□ 0.56
LIG1-218ENST00000599322 RUNDC1Q96C34 613 aa18.58■□□□□ 0.56
LIG1-218ENST00000599322 SRP68Q9UHB9 627 aaKnown RBP18.57■□□□□ 0.56
LIG1-218ENST00000599322 NARFQ9UHQ1 456 aa18.57■□□□□ 0.56
LIG1-218ENST00000599322 COL15A1P39059 1388 aa18.56■□□□□ 0.56
LIG1-218ENST00000599322 IL6STP40189 918 aaPredicted RBP18.56■□□□□ 0.56
LIG1-218ENST00000599322 USPL1Q5W0Q7 1092 aa18.56■□□□□ 0.56
LIG1-218ENST00000599322 PXDNLA1KZ92 1463 aa18.55■□□□□ 0.56
LIG1-218ENST00000599322 KCNQ3O43525 872 aa18.55■□□□□ 0.56
LIG1-218ENST00000599322 TMPOP42166 694 aaKnown RBP18.55■□□□□ 0.56
LIG1-218ENST00000599322 NEUROD2Q15784 382 aa18.55■□□□□ 0.56
LIG1-218ENST00000599322 CCDC146Q8IYE0 955 aa18.55■□□□□ 0.56
LIG1-218ENST00000599322 EIF5P55010 431 aaKnown RBP18.54■□□□□ 0.56
LIG1-218ENST00000599322 TGFB2P61812 414 aa18.54■□□□□ 0.56
LIG1-218ENST00000599322 FKBP8Q14318 412 aa18.54■□□□□ 0.56
LIG1-218ENST00000599322 ADAMTS8Q9UP79 889 aa18.54■□□□□ 0.56
LIG1-218ENST00000599322 ARFGEF1Q9Y6D6 1849 aa18.53■□□□□ 0.56
LIG1-218ENST00000599322 UBR2Q8IWV8 1755 aa18.53■□□□□ 0.56
LIG1-218ENST00000599322 MIS18AQ9NYP9 233 aa18.53■□□□□ 0.56
LIG1-218ENST00000599322 TSPYL4Q9UJ04 414 aa18.53■□□□□ 0.56
LIG1-218ENST00000599322 SIPA1L3O60292 1781 aaPredicted RBP18.53■□□□□ 0.56
LIG1-218ENST00000599322 C10orf71Q711Q0 1435 aa18.52■□□□□ 0.56
LIG1-218ENST00000599322 A1BGP04217 495 aa18.52■□□□□ 0.56
LIG1-218ENST00000599322 BABAM1Q9NWV8 329 aa18.52■□□□□ 0.56
LIG1-218ENST00000599322 USP16Q9Y5T5 823 aa18.52■□□□□ 0.56
LIG1-218ENST00000599322 CEP350Q5VT06 3117 aa18.52■□□□□ 0.55
LIG1-218ENST00000599322 NPHP1O15259 732 aa18.51■□□□□ 0.55
LIG1-218ENST00000599322 THUMPD2Q9BTF0 503 aaKnown RBP18.51■□□□□ 0.55
LIG1-218ENST00000599322 GPBP1L1Q9HC44 474 aaPredicted RBP18.5■□□□□ 0.55
LIG1-218ENST00000599322 TBC1D2BQ9UPU7 963 aa18.5■□□□□ 0.55
LIG1-218ENST00000599322 ZNF652Q9Y2D9 606 aa18.5■□□□□ 0.55
LIG1-218ENST00000599322 RRP7AQ9Y3A4 280 aaKnown RBP18.5■□□□□ 0.55
LIG1-218ENST00000599322 TM4SF1P30408 202 aa18.49■□□□□ 0.55
LIG1-218ENST00000599322 CALD1Q05682 793 aaKnown RBP18.49■□□□□ 0.55
LIG1-218ENST00000599322 DZIP3Q86Y13 1208 aaKnown RBP18.49■□□□□ 0.55
LIG1-218ENST00000599322 ZNF526Q8TF50 670 aaPredicted RBP18.49■□□□□ 0.55
LIG1-218ENST00000599322 EIF4A1P60842 406 aaKnown RBP18.48■□□□□ 0.55
LIG1-218ENST00000599322 BICDL1Q6ZP65 573 aa18.48■□□□□ 0.55
LIG1-218ENST00000599322 LAS1LQ9Y4W2 734 aaKnown RBP18.48■□□□□ 0.55
LIG1-218ENST00000599322 AFDNP55196 1824 aaKnown RBP18.48■□□□□ 0.55
LIG1-218ENST00000599322 A0A0G2JLW4 131 aa18.47■□□□□ 0.55
LIG1-218ENST00000599322 POLRMTO00411 1230 aaKnown RBP18.47■□□□□ 0.55
LIG1-218ENST00000599322 SERPINB2P05120 415 aa18.47■□□□□ 0.55
LIG1-218ENST00000599322 NFIXQ14938 502 aa18.47■□□□□ 0.55
LIG1-218ENST00000599322 SETDB2Q96T68 719 aa18.47■□□□□ 0.55
LIG1-218ENST00000599322 DLG5Q8TDM6 1919 aa18.47■□□□□ 0.55
LIG1-218ENST00000599322 DDR1Q08345 913 aa18.46■□□□□ 0.55
LIG1-218ENST00000599322 SBF1O95248 1867 aa18.46■□□□□ 0.54
LIG1-218ENST00000599322 PRAMEF22A3QJZ6 481 aa18.45■□□□□ 0.54
LIG1-218ENST00000599322 MRS2Q9HD23 443 aa18.45■□□□□ 0.54
LIG1-218ENST00000599322 BCS1LQ9Y276 419 aa18.45■□□□□ 0.54
LIG1-218ENST00000599322 DPEP1P16444 411 aa18.44■□□□□ 0.54
LIG1-218ENST00000599322 CLEC4GQ6UXB4 293 aa18.44■□□□□ 0.54
LIG1-218ENST00000599322 PIM2Q9P1W9 311 aa18.44■□□□□ 0.54
LIG1-218ENST00000599322 APAF1O14727 1248 aa18.43■□□□□ 0.54
LIG1-218ENST00000599322 PIP4K2AP48426 406 aaPredicted RBP18.43■□□□□ 0.54
LIG1-218ENST00000599322 KIF6Q6ZMV9 814 aa18.43■□□□□ 0.54
LIG1-218ENST00000599322 BCL2L12Q9HB09 334 aa18.43■□□□□ 0.54
LIG1-218ENST00000599322 PDZRN3Q9UPQ7 1066 aa18.43■□□□□ 0.54
LIG1-218ENST00000599322 KIF3CO14782 793 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 RGL2O15211 777 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 CAMTA2O94983 1202 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 KCNA3P22001 575 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 TBC1D9BQ66K14 1250 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 NGEFQ8N5V2 710 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 NRXN2Q9P2S2 1712 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 ERBB4Q15303 1308 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 CARMIL3Q8ND23 1372 aa18.42■□□□□ 0.54
LIG1-218ENST00000599322 DLEC1Q9Y238 1755 aa18.41■□□□□ 0.54
LIG1-218ENST00000599322 H0YIN7 160 aa18.41■□□□□ 0.54
LIG1-218ENST00000599322 EIF2S2P20042 333 aaKnown RBP18.41■□□□□ 0.54
LIG1-218ENST00000599322 ST5P78524 1137 aa18.41■□□□□ 0.54
LIG1-218ENST00000599322 DALRD3Q5D0E6 543 aaKnown RBP18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms