RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 RBM42Q9BTD8 480 aaKnown RBP19.71■□□□□ 0.75
UPF1-206ENST00000598471 API5Q9BZZ5 524 aaKnown RBP19.71■□□□□ 0.75
UPF1-206ENST00000598471 DBF4Q9UBU7 674 aaPredicted RBP19.71■□□□□ 0.75
UPF1-206ENST00000598471 PTPRCP08575 1304 aa19.71■□□□□ 0.75
UPF1-206ENST00000598471 KAT6BQ8WYB5 2073 aa19.71■□□□□ 0.75
UPF1-206ENST00000598471 C5P01031 1676 aa19.7■□□□□ 0.74
UPF1-206ENST00000598471 KCNQ2O43526 872 aa19.69■□□□□ 0.74
UPF1-206ENST00000598471 ERBB4Q15303 1308 aa19.69■□□□□ 0.74
UPF1-206ENST00000598471 PALLDQ8WX93 1383 aa19.69■□□□□ 0.74
UPF1-206ENST00000598471 PRAMEF22A3QJZ6 481 aa19.68■□□□□ 0.74
UPF1-206ENST00000598471 DEFB132Q7Z7B7 95 aa19.68■□□□□ 0.74
UPF1-206ENST00000598471 CHPF2Q9P2E5 772 aa19.68■□□□□ 0.74
UPF1-206ENST00000598471 CACNA1FO60840 1977 aa19.67■□□□□ 0.74
UPF1-206ENST00000598471 DZIP1LQ8IYY4 767 aaKnown RBP19.67■□□□□ 0.74
UPF1-206ENST00000598471 DDX21Q9NR30 783 aaKnown RBP eCLIP19.67■□□□□ 0.74
UPF1-206ENST00000598471 HYPKQ9NX55 129 aa19.67■□□□□ 0.74
UPF1-206ENST00000598471 STARD3NLO95772 234 aa19.66■□□□□ 0.74
UPF1-206ENST00000598471 TRIM27P14373 513 aa19.66■□□□□ 0.74
UPF1-206ENST00000598471 FLIIQ13045 1269 aa19.66■□□□□ 0.74
UPF1-206ENST00000598471 BCL11BQ9C0K0 894 aaPredicted RBP19.66■□□□□ 0.74
UPF1-206ENST00000598471 USP16Q9Y5T5 823 aa19.66■□□□□ 0.74
UPF1-206ENST00000598471 SF3B2Q13435 895 aaKnown RBP19.65■□□□□ 0.74
UPF1-206ENST00000598471 C20orf194Q5TEA3 1177 aa19.65■□□□□ 0.74
UPF1-206ENST00000598471 APBA3O96018 575 aa19.64■□□□□ 0.73
UPF1-206ENST00000598471 CLUAP1Q96AJ1 413 aa19.64■□□□□ 0.73
UPF1-206ENST00000598471 BTAF1O14981 1849 aa19.64■□□□□ 0.73
UPF1-206ENST00000598471 SBF2Q86WG5 1849 aa19.64■□□□□ 0.73
UPF1-206ENST00000598471 LOC102724428A0A0B4J2F2 783 aa19.63■□□□□ 0.73
UPF1-206ENST00000598471 SIK1P57059 783 aa19.63■□□□□ 0.73
UPF1-206ENST00000598471 EN1Q05925 392 aaPredicted RBP19.63■□□□□ 0.73
UPF1-206ENST00000598471 FKBP5Q13451 457 aaPredicted RBP19.63■□□□□ 0.73
UPF1-206ENST00000598471 G2E3Q7L622 706 aa19.63■□□□□ 0.73
UPF1-206ENST00000598471 DNAJC10Q8IXB1 793 aa19.63■□□□□ 0.73
UPF1-206ENST00000598471 PANK1Q8TE04 598 aa19.63■□□□□ 0.73
UPF1-206ENST00000598471 CRBNQ96SW2 442 aa19.63■□□□□ 0.73
UPF1-206ENST00000598471 CICQ96RK0 1608 aaPredicted RBP19.62■□□□□ 0.73
UPF1-206ENST00000598471 ABCC4O15439 1325 aa19.61■□□□□ 0.73
UPF1-206ENST00000598471 DDX58O95786 925 aaKnown RBP19.61■□□□□ 0.73
UPF1-206ENST00000598471 ATP6V1AP38606 617 aa19.61■□□□□ 0.73
UPF1-206ENST00000598471 ZNF831Q5JPB2 1677 aa19.61■□□□□ 0.73
UPF1-206ENST00000598471 EP400Q96L91 3159 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 TJP1Q07157 1748 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 ANXA1P04083 346 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 MYL6BP14649 208 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 BAG6P46379 1132 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 MVPQ14764 893 aaKnown RBP19.6■□□□□ 0.73
UPF1-206ENST00000598471 PDIA6Q15084 440 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 PROSER3Q2NL68 480 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 EXOC6Q8TAG9 804 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 SLC4A9Q96Q91 983 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 PHAXQ9H814 394 aaKnown RBP19.6■□□□□ 0.73
UPF1-206ENST00000598471 TNNQ9UQP3 1299 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 COG6Q9Y2V7 657 aa19.6■□□□□ 0.73
UPF1-206ENST00000598471 RLBP1P12271 317 aa19.59■□□□□ 0.73
UPF1-206ENST00000598471 EZH2Q15910 746 aaKnown RBP19.59■□□□□ 0.73
UPF1-206ENST00000598471 ITPRIPQ8IWB1 547 aa19.59■□□□□ 0.73
UPF1-206ENST00000598471 CAMKK2Q96RR4 588 aa19.59■□□□□ 0.73
UPF1-206ENST00000598471 CHMP4BQ9H444 224 aaKnown RBP19.59■□□□□ 0.73
UPF1-206ENST00000598471 CYP19A1P11511 503 aaPredicted RBP19.58■□□□□ 0.72
UPF1-206ENST00000598471 AAMPQ13685 434 aa19.58■□□□□ 0.72
UPF1-206ENST00000598471 TMEM57Q8N5G2 664 aa19.58■□□□□ 0.72
UPF1-206ENST00000598471 DDX19BQ9UMR2 479 aa19.58■□□□□ 0.72
UPF1-206ENST00000598471 PXDNLA1KZ92 1463 aa19.58■□□□□ 0.72
UPF1-206ENST00000598471 A1BGP04217 495 aa19.57■□□□□ 0.72
UPF1-206ENST00000598471 HMGB2P26583 209 aaKnown RBP19.57■□□□□ 0.72
UPF1-206ENST00000598471 CCT4P50991 539 aaKnown RBP19.57■□□□□ 0.72
UPF1-206ENST00000598471 NPM2Q86SE8 214 aaKnown RBP19.57■□□□□ 0.72
UPF1-206ENST00000598471 AIMP1Q12904 312 aaKnown RBP19.56■□□□□ 0.72
UPF1-206ENST00000598471 XAGE3Q8WTP9 111 aa19.56■□□□□ 0.72
UPF1-206ENST00000598471 CCNL1Q9UK58 526 aaPredicted RBP19.56■□□□□ 0.72
UPF1-206ENST00000598471 NBPF26B4DH59 902 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 ITPK1Q13572 414 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 NBPF14Q5TI25 921 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 INTS3Q68E01 1043 aaKnown RBP19.55■□□□□ 0.72
UPF1-206ENST00000598471 NBPF10Q6P3W6 841 aaKnown RBP19.55■□□□□ 0.72
UPF1-206ENST00000598471 SLC4A10Q6U841 1118 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 KSR2Q6VAB6 950 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 COPS6Q7L5N1 327 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 PROM2Q8N271 834 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 NBPF15Q8N660 670 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 CCDC87Q9NVE4 849 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 PPP4R2Q9NY27 417 aa19.55■□□□□ 0.72
UPF1-206ENST00000598471 PI4KAP2A4QPH2 592 aa19.54■□□□□ 0.72
UPF1-206ENST00000598471 F6X3S4 739 aa19.54■□□□□ 0.72
UPF1-206ENST00000598471 PLSCR1O15162 318 aa19.54■□□□□ 0.72
UPF1-206ENST00000598471 PIP4K2AP48426 406 aaPredicted RBP19.54■□□□□ 0.72
UPF1-206ENST00000598471 LRP10Q7Z4F1 713 aa19.54■□□□□ 0.72
UPF1-206ENST00000598471 RIC3Q7Z5B4 369 aa19.54■□□□□ 0.72
UPF1-206ENST00000598471 PI4KAP1Q8N8J0 262 aa19.54■□□□□ 0.72
UPF1-206ENST00000598471 DNAAF4Q8WXU2 420 aa19.54■□□□□ 0.72
UPF1-206ENST00000598471 LY75O60449 1722 aa19.54■□□□□ 0.72
UPF1-206ENST00000598471 COL5A3P25940 1745 aaPredicted RBP19.52■□□□□ 0.72
UPF1-206ENST00000598471 IL6STP40189 918 aaPredicted RBP19.52■□□□□ 0.72
UPF1-206ENST00000598471 CRKLP46109 303 aaKnown RBP19.52■□□□□ 0.72
UPF1-206ENST00000598471 SLC27A3Q5K4L6 730 aa19.52■□□□□ 0.72
UPF1-206ENST00000598471 KIF6Q6ZMV9 814 aa19.52■□□□□ 0.72
UPF1-206ENST00000598471 ANKRD13DQ6ZTN6 518 aa19.52■□□□□ 0.72
UPF1-206ENST00000598471 ZBTB1Q9Y2K1 713 aa19.52■□□□□ 0.72
UPF1-206ENST00000598471 MAP3K2Q9Y2U5 619 aa19.52■□□□□ 0.72
UPF1-206ENST00000598471 ZNF330Q9Y3S2 320 aaPredicted RBP19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms