RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 FERMT3Q86UX7 667 aa18.38■□□□□ 0.53
UPF1-204ENST00000596842 IL17REQ8NFR9 667 aa18.38■□□□□ 0.53
UPF1-204ENST00000596842 TCEANC2Q96MN5 208 aa18.38■□□□□ 0.53
UPF1-204ENST00000596842 OSBPL3Q9H4L5 887 aa18.38■□□□□ 0.53
UPF1-204ENST00000596842 CCDC9Q9Y3X0 531 aaKnown RBP18.38■□□□□ 0.53
UPF1-204ENST00000596842 IBTKQ9P2D0 1353 aaPredicted RBP18.38■□□□□ 0.53
UPF1-204ENST00000596842 TSPOAP1O95153 1857 aa18.38■□□□□ 0.53
UPF1-204ENST00000596842 PI4KAP2A4QPH2 592 aa18.38■□□□□ 0.53
UPF1-204ENST00000596842 PAXIP1Q6ZW49 1069 aaPredicted RBP18.38■□□□□ 0.53
UPF1-204ENST00000596842 PI4KAP1Q8N8J0 262 aa18.38■□□□□ 0.53
UPF1-204ENST00000596842 RHPN1Q8TCX5 695 aa18.38■□□□□ 0.53
UPF1-204ENST00000596842 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.38■□□□□ 0.53
UPF1-204ENST00000596842 WDR33Q9C0J8 1336 aaKnown RBP18.38■□□□□ 0.53
UPF1-204ENST00000596842 RASEFQ8IZ41 740 aa18.37■□□□□ 0.53
UPF1-204ENST00000596842 AK2P54819 239 aa18.37■□□□□ 0.53
UPF1-204ENST00000596842 CDC42BPGQ6DT37 1551 aa18.37■□□□□ 0.53
UPF1-204ENST00000596842 GIMAP6Q6P9H5 292 aa18.37■□□□□ 0.53
UPF1-204ENST00000596842 SPC24Q8NBT2 197 aa18.37■□□□□ 0.53
UPF1-204ENST00000596842 AIMP1Q12904 312 aaKnown RBP18.36■□□□□ 0.53
UPF1-204ENST00000596842 PA2G4Q9UQ80 394 aaKnown RBP18.36■□□□□ 0.53
UPF1-204ENST00000596842 CRB1P82279 1406 aa18.36■□□□□ 0.53
UPF1-204ENST00000596842 PRPF40BQ6NWY9 871 aaKnown RBP18.36■□□□□ 0.53
UPF1-204ENST00000596842 CHPF2Q9P2E5 772 aa18.36■□□□□ 0.53
UPF1-204ENST00000596842 NECAB1Q8N987 351 aa18.36■□□□□ 0.53
UPF1-204ENST00000596842 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.36■□□□□ 0.53
UPF1-204ENST00000596842 KCNQ3O43525 872 aa18.35■□□□□ 0.53
UPF1-204ENST00000596842 KIAA2012Q0VF49 1180 aa18.35■□□□□ 0.53
UPF1-204ENST00000596842 JAKMIP1Q96N16 626 aaKnown RBP18.35■□□□□ 0.53
UPF1-204ENST00000596842 C9orf78Q9NZ63 289 aaPredicted RBP18.35■□□□□ 0.53
UPF1-204ENST00000596842 CNTROBQ8N137 903 aa18.35■□□□□ 0.53
UPF1-204ENST00000596842 PHF14O94880 888 aa18.35■□□□□ 0.53
UPF1-204ENST00000596842 SIL1Q9H173 461 aa18.35■□□□□ 0.53
UPF1-204ENST00000596842 SOS1Q07889 1333 aaPredicted RBP18.34■□□□□ 0.53
UPF1-204ENST00000596842 PDLIM2Q96JY6 352 aa18.34■□□□□ 0.53
UPF1-204ENST00000596842 EID1Q9Y6B2 187 aa18.34■□□□□ 0.53
UPF1-204ENST00000596842 FAM173BQ6P4H8 233 aa18.34■□□□□ 0.53
UPF1-204ENST00000596842 LGR6Q9HBX8 967 aa18.34■□□□□ 0.53
UPF1-204ENST00000596842 CLTCQ00610 1675 aaKnown RBP18.33■□□□□ 0.53
UPF1-204ENST00000596842 TEFQ10587 303 aa18.33■□□□□ 0.53
UPF1-204ENST00000596842 SNX14Q9Y5W7 946 aa18.33■□□□□ 0.53
UPF1-204ENST00000596842 IGSF3O75054 1194 aa18.33■□□□□ 0.52
UPF1-204ENST00000596842 SYT1P21579 422 aa18.33■□□□□ 0.52
UPF1-204ENST00000596842 CUL4AQ13619 759 aa18.33■□□□□ 0.52
UPF1-204ENST00000596842 MPRIPQ6WCQ1 1025 aa18.33■□□□□ 0.52
UPF1-204ENST00000596842 STX6O43752 255 aa18.33■□□□□ 0.52
UPF1-204ENST00000596842 ADCY5O95622 1261 aa18.33■□□□□ 0.52
UPF1-204ENST00000596842 DNM1Q05193 864 aaKnown RBP18.33■□□□□ 0.52
UPF1-204ENST00000596842 CAMK4Q16566 473 aa18.33■□□□□ 0.52
UPF1-204ENST00000596842 LARGE1O95461 756 aa18.32■□□□□ 0.52
UPF1-204ENST00000596842 STK3Q13188 491 aa18.32■□□□□ 0.52
UPF1-204ENST00000596842 FLT4P35916 1363 aa18.32■□□□□ 0.52
UPF1-204ENST00000596842 TAOK2Q9UL54 1235 aa18.32■□□□□ 0.52
UPF1-204ENST00000596842 SETD1BQ9UPS6 1966 aaKnown RBP18.32■□□□□ 0.52
UPF1-204ENST00000596842 IFIT2P09913 472 aaKnown RBP18.31■□□□□ 0.52
UPF1-204ENST00000596842 ANAPC15P60006 121 aa18.31■□□□□ 0.52
UPF1-204ENST00000596842 KIF1BPQ96EK5 621 aa18.31■□□□□ 0.52
UPF1-204ENST00000596842 GJB2P29033 226 aa18.31■□□□□ 0.52
UPF1-204ENST00000596842 HSPA4P34932 840 aa18.31■□□□□ 0.52
UPF1-204ENST00000596842 FOSBP53539 338 aa18.31■□□□□ 0.52
UPF1-204ENST00000596842 PLEKHG3A1L390 1219 aa18.3■□□□□ 0.52
UPF1-204ENST00000596842 USP6P35125 1406 aa18.3■□□□□ 0.52
UPF1-204ENST00000596842 CLASRPQ8N2M8 674 aaKnown RBP18.3■□□□□ 0.52
UPF1-204ENST00000596842 INTS4Q96HW7 963 aaKnown RBP18.3■□□□□ 0.52
UPF1-204ENST00000596842 NAP1L2Q9ULW6 460 aaPredicted RBP18.3■□□□□ 0.52
UPF1-204ENST00000596842 ZSCAN22P10073 491 aaPredicted RBP18.3■□□□□ 0.52
UPF1-204ENST00000596842 CSPP1Q1MSJ5 1256 aa18.3■□□□□ 0.52
UPF1-204ENST00000596842 CCDC8Q9H0W5 538 aaPredicted RBP18.3■□□□□ 0.52
UPF1-204ENST00000596842 LIMCH1Q9UPQ0 1083 aa18.3■□□□□ 0.52
UPF1-204ENST00000596842 ADCK5Q3MIX3 580 aa18.3■□□□□ 0.52
UPF1-204ENST00000596842 RUFY3Q7L099 469 aa18.3■□□□□ 0.52
UPF1-204ENST00000596842 CHMP4AQ9BY43 222 aa18.3■□□□□ 0.52
UPF1-204ENST00000596842 SGSM2O43147 1006 aa18.29■□□□□ 0.52
UPF1-204ENST00000596842 HOXC9P31274 260 aa18.29■□□□□ 0.52
UPF1-204ENST00000596842 ZNF500O60304 480 aaPredicted RBP18.29■□□□□ 0.52
UPF1-204ENST00000596842 PTH1RQ03431 593 aa18.29■□□□□ 0.52
UPF1-204ENST00000596842 CWF19L2Q2TBE0 894 aaKnown RBP18.29■□□□□ 0.52
UPF1-204ENST00000596842 DNAAF4Q8WXU2 420 aa18.29■□□□□ 0.52
UPF1-204ENST00000596842 LRRC59Q96AG4 307 aaKnown RBP18.29■□□□□ 0.52
UPF1-204ENST00000596842 PDRG1Q9NUG6 133 aa18.29■□□□□ 0.52
UPF1-204ENST00000596842 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.29■□□□□ 0.52
UPF1-204ENST00000596842 HS1BP3Q53T59 392 aa18.29■□□□□ 0.52
UPF1-204ENST00000596842 AACSQ86V21 672 aa18.29■□□□□ 0.52
UPF1-204ENST00000596842 RIMS1Q86UR5 1692 aaKnown RBP18.28■□□□□ 0.52
UPF1-204ENST00000596842 RICTORQ6R327 1708 aa18.28■□□□□ 0.52
UPF1-204ENST00000596842 SALL3Q9BXA9 1300 aa18.28■□□□□ 0.52
UPF1-204ENST00000596842 TNRQ92752 1358 aa18.28■□□□□ 0.52
UPF1-204ENST00000596842 PPFIA3O75145 1194 aa18.28■□□□□ 0.52
UPF1-204ENST00000596842 CCDC183Q5T5S1 534 aa18.28■□□□□ 0.52
UPF1-204ENST00000596842 GOLGA6L4A6NEF3 574 aa18.28■□□□□ 0.52
UPF1-204ENST00000596842 CBX1P83916 185 aa18.27■□□□□ 0.52
UPF1-204ENST00000596842 DRC7Q8IY82 874 aa18.27■□□□□ 0.52
UPF1-204ENST00000596842 SSH3Q8TE77 659 aa18.27■□□□□ 0.52
UPF1-204ENST00000596842 TFIP11Q9UBB9 837 aaKnown RBP18.27■□□□□ 0.52
UPF1-204ENST00000596842 PI4K2BQ8TCG2 481 aa18.27■□□□□ 0.51
UPF1-204ENST00000596842 BOLA2Q9H3K6 86 aa18.27■□□□□ 0.51
UPF1-204ENST00000596842 STAP2Q9UGK3 403 aa18.27■□□□□ 0.51
UPF1-204ENST00000596842 SBNO1A3KN83 1393 aa18.26■□□□□ 0.51
UPF1-204ENST00000596842 RAD50Q92878 1312 aa18.26■□□□□ 0.51
UPF1-204ENST00000596842 BTBD11A6QL63 1104 aa18.26■□□□□ 0.51
UPF1-204ENST00000596842 F13A1P00488 732 aa18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms