RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 FAM184AQ8NB25 1140 aa17.96■□□□□ 0.47
SMARCA4-219ENST00000592604 BABAM1Q9NWV8 329 aa17.96■□□□□ 0.47
SMARCA4-219ENST00000592604 GADD45BO75293 160 aaPredicted RBP17.95■□□□□ 0.46
SMARCA4-219ENST00000592604 IL25Q9H293 177 aa17.95■□□□□ 0.46
SMARCA4-219ENST00000592604 RAB11FIP3O75154 756 aa17.95■□□□□ 0.46
SMARCA4-219ENST00000592604 UQCRHLA0A096LP55 91 aa17.95■□□□□ 0.46
SMARCA4-219ENST00000592604 SOX12O15370 315 aa17.95■□□□□ 0.46
SMARCA4-219ENST00000592604 UQCRHP07919 91 aa17.95■□□□□ 0.46
SMARCA4-219ENST00000592604 UBR1Q8IWV7 1749 aa17.95■□□□□ 0.46
SMARCA4-219ENST00000592604 TSPOAP1O95153 1857 aa17.94■□□□□ 0.46
SMARCA4-219ENST00000592604 PTPRUQ92729 1446 aa17.94■□□□□ 0.46
SMARCA4-219ENST00000592604 RPAP1Q9BWH6 1393 aaPredicted RBP17.94■□□□□ 0.46
SMARCA4-219ENST00000592604 GNAT3A8MTJ3 354 aa17.94■□□□□ 0.46
SMARCA4-219ENST00000592604 DYNC1I1O14576 645 aa17.94■□□□□ 0.46
SMARCA4-219ENST00000592604 NUTM2FA1L443 756 aa17.93■□□□□ 0.46
SMARCA4-219ENST00000592604 SASS6Q6UVJ0 657 aa17.93■□□□□ 0.46
SMARCA4-219ENST00000592604 TNRQ92752 1358 aa17.93■□□□□ 0.46
SMARCA4-219ENST00000592604 UBTFL1P0CB47 393 aaPredicted RBP17.93■□□□□ 0.46
SMARCA4-219ENST00000592604 GDPD2Q9HCC8 539 aa17.93■□□□□ 0.46
SMARCA4-219ENST00000592604 RAD50Q92878 1312 aa17.93■□□□□ 0.46
SMARCA4-219ENST00000592604 SGSM2O43147 1006 aa17.92■□□□□ 0.46
SMARCA4-219ENST00000592604 POLA2Q14181 598 aa17.92■□□□□ 0.46
SMARCA4-219ENST00000592604 TTC14Q96N46 770 aa17.92■□□□□ 0.46
SMARCA4-219ENST00000592604 PI4K2BQ8TCG2 481 aa17.92■□□□□ 0.46
SMARCA4-219ENST00000592604 AMPHP49418 695 aa17.92■□□□□ 0.46
SMARCA4-219ENST00000592604 IL1RAPL2Q9NP60 686 aa17.92■□□□□ 0.46
SMARCA4-219ENST00000592604 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.92■□□□□ 0.46
SMARCA4-219ENST00000592604 LETM1O95202 739 aaPredicted RBP17.91■□□□□ 0.46
SMARCA4-219ENST00000592604 PTMAP06454 111 aaKnown RBP17.91■□□□□ 0.46
SMARCA4-219ENST00000592604 KIAA2012Q0VF49 1180 aa17.91■□□□□ 0.46
SMARCA4-219ENST00000592604 CCDC183Q5T5S1 534 aa17.91■□□□□ 0.46
SMARCA4-219ENST00000592604 ESF1Q9H501 851 aaKnown RBP17.91■□□□□ 0.46
SMARCA4-219ENST00000592604 SNX14Q9Y5W7 946 aa17.91■□□□□ 0.46
SMARCA4-219ENST00000592604 NUTM1Q86Y26 1132 aa17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 IL17REQ8NFR9 667 aa17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 NECTIN2Q92692 538 aa17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 FAM13BQ9NYF5 915 aa17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 PLEKHG1Q9ULL1 1385 aa17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 ZSCAN22P10073 491 aaPredicted RBP17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 TAF7Q15545 349 aaPredicted RBP17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 MTERF4Q7Z6M4 381 aaKnown RBP17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 RHPN1Q8TCX5 695 aa17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 LSG1Q9H089 658 aaKnown RBP17.9■□□□□ 0.46
SMARCA4-219ENST00000592604 FOXD4L6Q3SYB3 417 aaPredicted RBP17.89■□□□□ 0.46
SMARCA4-219ENST00000592604 FOXD4L3Q6VB84 417 aaPredicted RBP17.89■□□□□ 0.46
SMARCA4-219ENST00000592604 PPP1R42Q7Z4L9 355 aa17.89■□□□□ 0.46
SMARCA4-219ENST00000592604 MAP3K5Q99683 1374 aa17.89■□□□□ 0.45
SMARCA4-219ENST00000592604 SURF6O75683 361 aaKnown RBP17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 DHX37Q8IY37 1157 aaKnown RBP17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 LIMCH1Q9UPQ0 1083 aa17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 UBE2HP62256 183 aa17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 KIF1BPQ96EK5 621 aa17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 NAP1L2Q9ULW6 460 aaPredicted RBP17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 NWD1Q149M9 1564 aa17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 CNPY2Q9Y2B0 182 aa17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.88■□□□□ 0.45
SMARCA4-219ENST00000592604 CRYBG1Q9Y4K1 1723 aa17.87■□□□□ 0.45
SMARCA4-219ENST00000592604 STX6O43752 255 aa17.87■□□□□ 0.45
SMARCA4-219ENST00000592604 AK2P54819 239 aa17.87■□□□□ 0.45
SMARCA4-219ENST00000592604 CYB5RLQ6IPT4 315 aa17.87■□□□□ 0.45
SMARCA4-219ENST00000592604 CNTROBQ8N137 903 aa17.87■□□□□ 0.45
SMARCA4-219ENST00000592604 PIK3C2AO00443 1686 aa17.87■□□□□ 0.45
SMARCA4-219ENST00000592604 USP42Q9H9J4 1324 aaKnown RBP17.86■□□□□ 0.45
SMARCA4-219ENST00000592604 SYT1P21579 422 aa17.86■□□□□ 0.45
SMARCA4-219ENST00000592604 RUFY3Q7L099 469 aa17.86■□□□□ 0.45
SMARCA4-219ENST00000592604 RASEFQ8IZ41 740 aa17.86■□□□□ 0.45
SMARCA4-219ENST00000592604 LTKP29376 864 aa17.86■□□□□ 0.45
SMARCA4-219ENST00000592604 HDGFL1Q5TGJ6 251 aa17.86■□□□□ 0.45
SMARCA4-219ENST00000592604 PIBF1Q8WXW3 757 aa17.86■□□□□ 0.45
SMARCA4-219ENST00000592604 ATP6V1DQ9Y5K8 247 aa17.86■□□□□ 0.45
SMARCA4-219ENST00000592604 MAP4K4O95819 1239 aaPredicted RBP17.85■□□□□ 0.45
SMARCA4-219ENST00000592604 F13A1P00488 732 aa17.85■□□□□ 0.45
SMARCA4-219ENST00000592604 PHAXQ9H814 394 aaKnown RBP17.85■□□□□ 0.45
SMARCA4-219ENST00000592604 USP25Q9UHP3 1055 aa17.85■□□□□ 0.45
SMARCA4-219ENST00000592604 SRGAP3O43295 1099 aa17.84■□□□□ 0.45
SMARCA4-219ENST00000592604 HOXC9P31274 260 aa17.84■□□□□ 0.45
SMARCA4-219ENST00000592604 NGDNQ8NEJ9 315 aaKnown RBP17.84■□□□□ 0.45
SMARCA4-219ENST00000592604 RGPD8O14715 1765 aaPredicted RBP17.84■□□□□ 0.45
SMARCA4-219ENST00000592604 ADCY5O95622 1261 aa17.84■□□□□ 0.45
SMARCA4-219ENST00000592604 HSP90AB4PQ58FF6 505 aa17.84■□□□□ 0.45
SMARCA4-219ENST00000592604 SMC3Q9UQE7 1217 aa17.84■□□□□ 0.45
SMARCA4-219ENST00000592604 MYRIPQ8NFW9 859 aa17.83■□□□□ 0.45
SMARCA4-219ENST00000592604 FUCA2Q9BTY2 467 aa17.83■□□□□ 0.45
SMARCA4-219ENST00000592604 TTC41PQ6P2S7 1318 aa17.83■□□□□ 0.44
SMARCA4-219ENST00000592604 HCLS1P14317 486 aaPredicted RBP17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 PRIMPOLQ96LW4 560 aa17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 HYPKQ9NX55 129 aa17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 KDM4AO75164 1064 aa17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 NBPF7P0C2Y1 421 aaPredicted RBP17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 NOLC1Q14978 699 aaKnown RBP eCLIP17.82■□□□□ 0.449e-6■□□□□ 8.9
SMARCA4-219ENST00000592604 BBXQ8WY36 941 aaPredicted RBP17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 KCNB2Q92953 911 aa17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 GLRX3O76003 335 aaKnown RBP17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 BEND3Q5T5X7 828 aa17.82■□□□□ 0.44
SMARCA4-219ENST00000592604 NLRP6P59044 892 aa17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 CWC27Q6UX04 472 aaKnown RBP17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 TM6SF1Q9BZW5 370 aa17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 CEMIPQ8WUJ3 1361 aa17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 USP54Q70EL1 1684 aa17.81■□□□□ 0.44
SMARCA4-219ENST00000592604 MARF1Q9Y4F3 1742 aaKnown RBP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms