RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 PIM2Q9P1W9 311 aa15.93■□□□□ 0.14
CLIP3-204ENST00000590559 CC2D1BQ5T0F9 858 aaKnown RBP15.92■□□□□ 0.14
CLIP3-204ENST00000590559 ARHGAP27Q6ZUM4 889 aa15.92■□□□□ 0.14
CLIP3-204ENST00000590559 BCL2L12Q9HB09 334 aa15.92■□□□□ 0.14
CLIP3-204ENST00000590559 NARFQ9UHQ1 456 aa15.92■□□□□ 0.14
CLIP3-204ENST00000590559 PCNTO95613 3336 aa15.92■□□□□ 0.14
CLIP3-204ENST00000590559 COL15A1P39059 1388 aa15.91■□□□□ 0.14
CLIP3-204ENST00000590559 USPL1Q5W0Q7 1092 aa15.91■□□□□ 0.14
CLIP3-204ENST00000590559 ZBTB1Q9Y2K1 713 aa15.91■□□□□ 0.14
CLIP3-204ENST00000590559 ANKRD31Q8N7Z5 1873 aa15.9■□□□□ 0.14
CLIP3-204ENST00000590559 SCN7AQ01118 1682 aa15.89■□□□□ 0.13
CLIP3-204ENST00000590559 ZPR1O75312 459 aa15.89■□□□□ 0.13
CLIP3-204ENST00000590559 CHRNA5P30532 468 aa15.89■□□□□ 0.13
CLIP3-204ENST00000590559 NFIXQ14938 502 aa15.89■□□□□ 0.13
CLIP3-204ENST00000590559 DALRD3Q5D0E6 543 aaKnown RBP15.89■□□□□ 0.13
CLIP3-204ENST00000590559 IL17REQ8NFR9 667 aa15.89■□□□□ 0.13
CLIP3-204ENST00000590559 CCDC88AQ3V6T2 1871 aa15.88■□□□□ 0.13
CLIP3-204ENST00000590559 TOMM70O94826 608 aa15.88■□□□□ 0.13
CLIP3-204ENST00000590559 C9orf131Q5VYM1 1079 aa15.88■□□□□ 0.13
CLIP3-204ENST00000590559 TNRC6CQ9HCJ0 1690 aaKnown RBP15.88■□□□□ 0.13
CLIP3-204ENST00000590559 CEMIPQ8WUJ3 1361 aa15.87■□□□□ 0.13
CLIP3-204ENST00000590559 EIF5P55010 431 aaKnown RBP15.87■□□□□ 0.13
CLIP3-204ENST00000590559 NMRK2Q9NPI5 230 aa15.87■□□□□ 0.13
CLIP3-204ENST00000590559 HEG1Q9ULI3 1381 aa15.86■□□□□ 0.13
CLIP3-204ENST00000590559 WDR90Q96KV7 1748 aa15.85■□□□□ 0.13
CLIP3-204ENST00000590559 BCORQ6W2J9 1755 aa15.85■□□□□ 0.13
CLIP3-204ENST00000590559 GNAT3A8MTJ3 354 aa15.85■□□□□ 0.13
CLIP3-204ENST00000590559 ZNF790Q6PG37 636 aa15.85■□□□□ 0.13
CLIP3-204ENST00000590559 ZNF496Q96IT1 587 aaPredicted RBP15.85■□□□□ 0.13
CLIP3-204ENST00000590559 SERPINB2P05120 415 aa15.84■□□□□ 0.13
CLIP3-204ENST00000590559 DNAJC5GQ8N7S2 189 aa15.84■□□□□ 0.13
CLIP3-204ENST00000590559 GAS2L2Q8NHY3 880 aa15.84■□□□□ 0.13
CLIP3-204ENST00000590559 COL11A2P13942 1736 aaPredicted RBP15.84■□□□□ 0.13
CLIP3-204ENST00000590559 CARMIL3Q8ND23 1372 aa15.84■□□□□ 0.13
CLIP3-204ENST00000590559 FER1L6Q2WGJ9 1857 aa15.83■□□□□ 0.12
CLIP3-204ENST00000590559 CANXP27824 592 aaKnown RBP15.83■□□□□ 0.12
CLIP3-204ENST00000590559 PRELPP51888 382 aa15.83■□□□□ 0.12
CLIP3-204ENST00000590559 RSPH6AQ9H0K4 717 aa15.83■□□□□ 0.12
CLIP3-204ENST00000590559 DICER1Q9UPY3 1922 aaKnown RBP15.83■□□□□ 0.12
CLIP3-204ENST00000590559 TIAM2Q8IVF5 1701 aa15.82■□□□□ 0.12
CLIP3-204ENST00000590559 U2SURPO15042 1029 aaKnown RBP15.82■□□□□ 0.12
CLIP3-204ENST00000590559 STARD3NLO95772 234 aa15.82■□□□□ 0.12
CLIP3-204ENST00000590559 APLP1P51693 650 aa15.82■□□□□ 0.12
CLIP3-204ENST00000590559 IFFO2Q5TF58 517 aa15.82■□□□□ 0.12
CLIP3-204ENST00000590559 TTC5Q8N0Z6 440 aa15.82■□□□□ 0.12
CLIP3-204ENST00000590559 RBM46Q8TBY0 533 aaKnown RBP15.82■□□□□ 0.12
CLIP3-204ENST00000590559 PHACTR3Q96KR7 559 aa15.82■□□□□ 0.12
CLIP3-204ENST00000590559 TEX13AQ9BXU3 409 aaPredicted RBP15.82■□□□□ 0.12
CLIP3-204ENST00000590559 RNF181Q9P0P0 153 aa15.82■□□□□ 0.12
CLIP3-204ENST00000590559 IL6STP40189 918 aaPredicted RBP15.81■□□□□ 0.12
CLIP3-204ENST00000590559 TEFQ10587 303 aa15.81■□□□□ 0.12
CLIP3-204ENST00000590559 ZC3H4Q9UPT8 1303 aaKnown RBP15.81■□□□□ 0.12
CLIP3-204ENST00000590559 ARFGEF2Q9Y6D5 1785 aa15.81■□□□□ 0.12
CLIP3-204ENST00000590559 A0A087WZG4 1122 aa15.8■□□□□ 0.12
CLIP3-204ENST00000590559 TBC1D9BQ66K14 1250 aa15.8■□□□□ 0.12
CLIP3-204ENST00000590559 KDM2BQ8NHM5 1336 aa15.79■□□□□ 0.12
CLIP3-204ENST00000590559 RASSF7Q02833 373 aa15.79■□□□□ 0.12
CLIP3-204ENST00000590559 TTLL6Q8N841 843 aa15.79■□□□□ 0.12
CLIP3-204ENST00000590559 KCNQ3O43525 872 aa15.78■□□□□ 0.12
CLIP3-204ENST00000590559 PRKAR2BP31323 418 aa15.78■□□□□ 0.12
CLIP3-204ENST00000590559 C2CD5Q86YS7 1000 aa15.78■□□□□ 0.12
CLIP3-204ENST00000590559 FMNL2Q96PY5 1086 aa15.78■□□□□ 0.12
CLIP3-204ENST00000590559 DLG5Q8TDM6 1919 aa15.78■□□□□ 0.12
CLIP3-204ENST00000590559 CACNA1SQ13698 1873 aa15.78■□□□□ 0.12
CLIP3-204ENST00000590559 H0YIN7 160 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 NFKBIEO00221 500 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 CAMTA2O94983 1202 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 A1BGP04217 495 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 LMNB1P20700 586 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 FSTL1Q12841 308 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 PRR5LQ6MZQ0 368 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 RRAGCQ9HB90 399 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 TBC1D2BQ9UPU7 963 aa15.77■□□□□ 0.12
CLIP3-204ENST00000590559 SLX4Q8IY92 1834 aa15.77■□□□□ 0.11
CLIP3-204ENST00000590559 BTBD11A6QL63 1104 aa15.76■□□□□ 0.11
CLIP3-204ENST00000590559 BICDL1Q6ZP65 573 aa15.76■□□□□ 0.11
CLIP3-204ENST00000590559 BRIP1Q9BX63 1249 aa15.76■□□□□ 0.11
CLIP3-204ENST00000590559 PDZRN3Q9UPQ7 1066 aa15.76■□□□□ 0.11
CLIP3-204ENST00000590559 PPP2R1AP30153 589 aa15.75■□□□□ 0.11
CLIP3-204ENST00000590559 CNGB1Q14028 1251 aaPredicted RBP15.75■□□□□ 0.11
CLIP3-204ENST00000590559 USP16Q9Y5T5 823 aa15.75■□□□□ 0.11
CLIP3-204ENST00000590559 GLTPD2A6NH11 291 aa15.74■□□□□ 0.11
CLIP3-204ENST00000590559 CFAP53Q96M91 514 aa15.74■□□□□ 0.11
CLIP3-204ENST00000590559 LAMB4A4D0S4 1761 aa15.74■□□□□ 0.11
CLIP3-204ENST00000590559 KDM3BQ7LBC6 1761 aa15.73■□□□□ 0.11
CLIP3-204ENST00000590559 PRAMEF22A3QJZ6 481 aa15.73■□□□□ 0.11
CLIP3-204ENST00000590559 PDE6BP35913 854 aa15.73■□□□□ 0.11
CLIP3-204ENST00000590559 POTECB2RU33 542 aa15.72■□□□□ 0.11
CLIP3-204ENST00000590559 HTATSF1O43719 755 aaKnown RBP15.72■□□□□ 0.11
CLIP3-204ENST00000590559 C16orf71Q8IYS4 520 aaPredicted RBP15.72■□□□□ 0.11
CLIP3-204ENST00000590559 NUDCQ9Y266 331 aa15.72■□□□□ 0.11
CLIP3-204ENST00000590559 LTBP3Q9NS15 1303 aa15.71■□□□□ 0.11
CLIP3-204ENST00000590559 CLEC4GQ6UXB4 293 aa15.71■□□□□ 0.11
CLIP3-204ENST00000590559 MCM10Q7L590 875 aa15.71■□□□□ 0.11
CLIP3-204ENST00000590559 DZIP3Q86Y13 1208 aaKnown RBP15.71■□□□□ 0.11
CLIP3-204ENST00000590559 CCDC24Q8N4L8 307 aa15.71■□□□□ 0.11
CLIP3-204ENST00000590559 JMYQ8N9B5 988 aa15.71■□□□□ 0.11
CLIP3-204ENST00000590559 SETDB2Q96T68 719 aa15.71■□□□□ 0.11
CLIP3-204ENST00000590559 RGL2O15211 777 aa15.7■□□□□ 0.1
CLIP3-204ENST00000590559 SNRPA1P09661 255 aaKnown RBP15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms