RNA–Protein interactions for RNA: ENST00000589536.5

GRN-215, Transcript of granulin precursor, human

TSL 3

Gene GRN, Length 546 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GRN-215	ENST00000589536	BRCA1	P38398	1863 aa	Known RBP	32.76	■■■□□ 2.83
GRN-215	ENST00000589536	ZPR1	O75312	459 aa		32.75	■■■□□ 2.83
GRN-215	ENST00000589536	DPEP1	P16444	411 aa		32.75	■■■□□ 2.83
GRN-215	ENST00000589536	ZNF496	Q96IT1	587 aa	Predicted RBP	32.75	■■■□□ 2.83
GRN-215	ENST00000589536	HEG1	Q9ULI3	1381 aa		32.74	■■■□□ 2.83
GRN-215	ENST00000589536	GIGYF1	O75420	1035 aa	Predicted RBP	32.74	■■■□□ 2.83
GRN-215	ENST00000589536	U2AF1L5	P0DN76	240 aa	Predicted RBP	32.74	■■■□□ 2.83
GRN-215	ENST00000589536	TM4SF1	P30408	202 aa		32.74	■■■□□ 2.83
GRN-215	ENST00000589536	U2AF1	Q01081	240 aa	Known RBP eCLIP	32.74	■■■□□ 2.83
GRN-215	ENST00000589536	POLRMT	O00411	1230 aa	Known RBP	32.73	■■■□□ 2.83
GRN-215	ENST00000589536	NARF	Q9UHQ1	456 aa		32.73	■■■□□ 2.83
GRN-215	ENST00000589536	FCHSD2	O94868	740 aa		32.71	■■■□□ 2.83
GRN-215	ENST00000589536	STARD3NL	O95772	234 aa		32.71	■■■□□ 2.83
GRN-215	ENST00000589536	KCNA3	P22001	575 aa		32.71	■■■□□ 2.83
GRN-215	ENST00000589536	BCS1L	Q9Y276	419 aa		32.71	■■■□□ 2.83
GRN-215	ENST00000589536	BCL2L12	Q9HB09	334 aa		32.69	■■■□□ 2.82
GRN-215	ENST00000589536	CANX	P27824	592 aa	Known RBP	32.68	■■■□□ 2.82
GRN-215	ENST00000589536	EIF5	P55010	431 aa	Known RBP	32.67	■■■□□ 2.82
GRN-215	ENST00000589536	NFIX	Q14938	502 aa		32.67	■■■□□ 2.82
GRN-215	ENST00000589536	FMNL2	Q96PY5	1086 aa		32.66	■■■□□ 2.82
GRN-215	ENST00000589536	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.66	■■■□□ 2.82
GRN-215	ENST00000589536	NRXN2	Q9P2S2	1712 aa		32.65	■■■□□ 2.82
GRN-215	ENST00000589536	BTBD11	A6QL63	1104 aa		32.65	■■■□□ 2.82
GRN-215	ENST00000589536	KCNQ3	O43525	872 aa		32.65	■■■□□ 2.82
GRN-215	ENST00000589536	AFDN	P55196	1824 aa	Known RBP	32.64	■■■□□ 2.82
GRN-215	ENST00000589536	ARFGEF1	Q9Y6D6	1849 aa		32.63	■■■□□ 2.81
GRN-215	ENST00000589536	MCM10	Q7L590	875 aa		32.62	■■■□□ 2.81
GRN-215	ENST00000589536	GPBP1L1	Q9HC44	474 aa	Predicted RBP	32.62	■■■□□ 2.81
GRN-215	ENST00000589536	PIM2	Q9P1W9	311 aa		32.62	■■■□□ 2.81
GRN-215	ENST00000589536	RTF1	Q92541	710 aa	Known RBP	32.61	■■■□□ 2.81
GRN-215	ENST00000589536	SCN7A	Q01118	1682 aa		32.61	■■■□□ 2.81
GRN-215	ENST00000589536		A0A087WZG4	1122 aa		32.6	■■■□□ 2.81
GRN-215	ENST00000589536	CHRNA5	P30532	468 aa		32.6	■■■□□ 2.81
GRN-215	ENST00000589536	ZNF526	Q8TF50	670 aa	Predicted RBP	32.59	■■■□□ 2.81
GRN-215	ENST00000589536	HTATSF1	O43719	755 aa	Known RBP	32.58	■■■□□ 2.81
GRN-215	ENST00000589536	IL6ST	P40189	918 aa	Predicted RBP	32.58	■■■□□ 2.81
GRN-215	ENST00000589536	ARHGAP27	Q6ZUM4	889 aa		32.58	■■■□□ 2.81
GRN-215	ENST00000589536	SENP3-EIF4A1	A0A087X0R7	540 aa		32.57	■■■□□ 2.8
GRN-215	ENST00000589536	SERPINB2	P05120	415 aa		32.57	■■■□□ 2.8
GRN-215	ENST00000589536	DCTN1	Q14203	1278 aa		32.57	■■■□□ 2.8
GRN-215	ENST00000589536	DALRD3	Q5D0E6	543 aa	Known RBP	32.57	■■■□□ 2.8
GRN-215	ENST00000589536	A1BG	P04217	495 aa		32.56	■■■□□ 2.8
GRN-215	ENST00000589536	TBC1D2B	Q9UPU7	963 aa		32.53	■■■□□ 2.8
GRN-215	ENST00000589536	ZNF330	Q9Y3S2	320 aa	Predicted RBP	32.53	■■■□□ 2.8
GRN-215	ENST00000589536	PRAMEF22	A3QJZ6	481 aa		32.52	■■■□□ 2.8
GRN-215	ENST00000589536	TBC1D9B	Q66K14	1250 aa		32.52	■■■□□ 2.8
GRN-215	ENST00000589536	BICDL1	Q6ZP65	573 aa		32.52	■■■□□ 2.8
GRN-215	ENST00000589536	PLEKHF1	Q96S99	279 aa		32.52	■■■□□ 2.8
GRN-215	ENST00000589536	USP16	Q9Y5T5	823 aa		32.52	■■■□□ 2.8
GRN-215	ENST00000589536	CARMIL3	Q8ND23	1372 aa		32.52	■■■□□ 2.8
GRN-215	ENST00000589536	DLEC1	Q9Y238	1755 aa		32.52	■■■□□ 2.8
GRN-215	ENST00000589536	SNRPA1	P09661	255 aa	Known RBP	32.5	■■■□□ 2.79
GRN-215	ENST00000589536	CAMTA2	O94983	1202 aa		32.49	■■■□□ 2.79
GRN-215	ENST00000589536	BCOR	Q6W2J9	1755 aa		32.49	■■■□□ 2.79
GRN-215	ENST00000589536	DLG5	Q8TDM6	1919 aa		32.49	■■■□□ 2.79
GRN-215	ENST00000589536	TAF7	Q15545	349 aa	Predicted RBP	32.47	■■■□□ 2.79
GRN-215	ENST00000589536	NEFM	P07197	916 aa		32.46	■■■□□ 2.79
GRN-215	ENST00000589536	PIP4K2A	P48426	406 aa	Predicted RBP	32.46	■■■□□ 2.79
GRN-215	ENST00000589536	KIF3C	O14782	793 aa		32.45	■■■□□ 2.79
GRN-215	ENST00000589536	C9orf131	Q5VYM1	1079 aa		32.45	■■■□□ 2.79
GRN-215	ENST00000589536	NPM2	Q86SE8	214 aa	Known RBP	32.45	■■■□□ 2.79
GRN-215	ENST00000589536	ANKRD31	Q8N7Z5	1873 aa		32.44	■■■□□ 2.78
GRN-215	ENST00000589536	DZIP3	Q86Y13	1208 aa	Known RBP	32.44	■■■□□ 2.78
GRN-215	ENST00000589536	NFE2L2	Q16236	605 aa		32.43	■■■□□ 2.78
GRN-215	ENST00000589536	C2CD5	Q86YS7	1000 aa		32.43	■■■□□ 2.78
GRN-215	ENST00000589536	KDM3B	Q7LBC6	1761 aa		32.42	■■■□□ 2.78
GRN-215	ENST00000589536	RALBP1	Q15311	655 aa		32.42	■■■□□ 2.78
GRN-215	ENST00000589536	PRR5L	Q6MZQ0	368 aa		32.42	■■■□□ 2.78
GRN-215	ENST00000589536	MIS18A	Q9NYP9	233 aa		32.42	■■■□□ 2.78
GRN-215	ENST00000589536	LAMB4	A4D0S4	1761 aa		32.4	■■■□□ 2.78
GRN-215	ENST00000589536	NBPF26	B4DH59	902 aa		32.4	■■■□□ 2.78
GRN-215	ENST00000589536		H0YIN7	160 aa		32.4	■■■□□ 2.78
GRN-215	ENST00000589536	NBPF10	Q6P3W6	841 aa	Known RBP	32.4	■■■□□ 2.78
GRN-215	ENST00000589536	NBPF15	Q8N660	670 aa		32.4	■■■□□ 2.78
GRN-215	ENST00000589536	TTLL6	Q8N841	843 aa		32.4	■■■□□ 2.78
GRN-215	ENST00000589536	CEP350	Q5VT06	3117 aa		32.4	■■■□□ 2.78
GRN-215	ENST00000589536	SETDB2	Q96T68	719 aa		32.39	■■■□□ 2.78
GRN-215	ENST00000589536	BRIP1	Q9BX63	1249 aa		32.39	■■■□□ 2.78
GRN-215	ENST00000589536	PNN	Q9H307	717 aa	Known RBP	32.39	■■■□□ 2.78
GRN-215	ENST00000589536	SBF1	O95248	1867 aa		32.38	■■■□□ 2.77
GRN-215	ENST00000589536	COL11A2	P13942	1736 aa	Predicted RBP	32.38	■■■□□ 2.77
GRN-215	ENST00000589536	PNISR	Q8TF01	805 aa	Known RBP	32.38	■■■□□ 2.77
GRN-215	ENST00000589536	MAPK8IP3	Q9UPT6	1336 aa		32.37	■■■□□ 2.77
GRN-215	ENST00000589536	CCDC24	Q8N4L8	307 aa		32.37	■■■□□ 2.77
GRN-215	ENST00000589536	THUMPD2	Q9BTF0	503 aa	Known RBP	32.37	■■■□□ 2.77
GRN-215	ENST00000589536	RNF181	Q9P0P0	153 aa		32.37	■■■□□ 2.77
GRN-215	ENST00000589536	DDX10	Q13206	875 aa	Known RBP	32.36	■■■□□ 2.77
GRN-215	ENST00000589536	CLEC4G	Q6UXB4	293 aa		32.36	■■■□□ 2.77
GRN-215	ENST00000589536	CNBD1	Q8NA66	436 aa		32.36	■■■□□ 2.77
GRN-215	ENST00000589536	PDZRN3	Q9UPQ7	1066 aa		32.36	■■■□□ 2.77
GRN-215	ENST00000589536	PDE6B	P35913	854 aa		32.35	■■■□□ 2.77
GRN-215	ENST00000589536	RASSF7	Q02833	373 aa		32.35	■■■□□ 2.77
GRN-215	ENST00000589536	NMRK2	Q9NPI5	230 aa		32.34	■■■□□ 2.77
GRN-215	ENST00000589536	RGL2	O15211	777 aa		32.33	■■■□□ 2.77
GRN-215	ENST00000589536	ZNF652	Q9Y2D9	606 aa		32.33	■■■□□ 2.77
GRN-215	ENST00000589536	EIF4A1	P60842	406 aa	Known RBP	32.32	■■■□□ 2.76
GRN-215	ENST00000589536	HSPA6	P17066	643 aa		32.3	■■■□□ 2.76
GRN-215	ENST00000589536	PRELP	P51888	382 aa		32.3	■■■□□ 2.76
GRN-215	ENST00000589536	ST5	P78524	1137 aa		32.3	■■■□□ 2.76
GRN-215	ENST00000589536	MYBBP1A	Q9BQG0	1328 aa	Known RBP	32.29	■■■□□ 2.76

Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms