RNA–Protein interactions for RNA: ENST00000589117.5

ZNF540-206, Transcript of zinc finger protein 540, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ZNF540, Length 2,349 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-206ENST00000589117 MCM10Q7L590 875 aa9.17□□□□□ -0.94
ZNF540-206ENST00000589117 STK31Q9BXU1 1019 aa9.17□□□□□ -0.94
ZNF540-206ENST00000589117 DCTPP1Q9H773 170 aa9.17□□□□□ -0.94
ZNF540-206ENST00000589117 SOS1Q07889 1333 aaPredicted RBP9.17□□□□□ -0.94
ZNF540-206ENST00000589117 TOPAZ1Q8N9V7 1692 aa9.17□□□□□ -0.94
ZNF540-206ENST00000589117 ANKARQ7Z5J8 1434 aa9.17□□□□□ -0.94
ZNF540-206ENST00000589117 SNX21Q969T3 373 aa9.17□□□□□ -0.94
ZNF540-206ENST00000589117 ANTXR1Q9H6X2 564 aa9.17□□□□□ -0.94
ZNF540-206ENST00000589117 TSPYL4Q9UJ04 414 aa9.17□□□□□ -0.94
ZNF540-206ENST00000589117 CCT4P50991 539 aaKnown RBP9.16□□□□□ -0.94
ZNF540-206ENST00000589117 ANKRD44Q8N8A2 993 aa9.16□□□□□ -0.94
ZNF540-206ENST00000589117 PROCA1Q8NCQ7 364 aaPredicted RBP9.16□□□□□ -0.94
ZNF540-206ENST00000589117 PTPRUQ92729 1446 aa9.16□□□□□ -0.94
ZNF540-206ENST00000589117 DLG5Q8TDM6 1919 aa9.16□□□□□ -0.94
ZNF540-206ENST00000589117 ZBTB7CA1YPR0 619 aa9.16□□□□□ -0.94
ZNF540-206ENST00000589117 CDC45O75419 566 aa9.16□□□□□ -0.94
ZNF540-206ENST00000589117 NLRP7Q8WX94 980 aa9.16□□□□□ -0.94
ZNF540-206ENST00000589117 PCMTD1Q96MG8 357 aaPredicted RBP9.16□□□□□ -0.94
ZNF540-206ENST00000589117 CDHR5Q9HBB8 845 aa9.16□□□□□ -0.94
ZNF540-206ENST00000589117 BABAM1Q9NWV8 329 aa9.16□□□□□ -0.94
ZNF540-206ENST00000589117 KDRP35968 1356 aa9.15□□□□□ -0.94
ZNF540-206ENST00000589117 HSP90AA1P07900 732 aaKnown RBP9.15□□□□□ -0.94
ZNF540-206ENST00000589117 SIRT2Q8IXJ6 389 aa9.15□□□□□ -0.94
ZNF540-206ENST00000589117 GNAT3A8MTJ3 354 aa9.15□□□□□ -0.95
ZNF540-206ENST00000589117 MTHFSDQ2M296 383 aaKnown RBP9.15□□□□□ -0.95
ZNF540-206ENST00000589117 CCDC30Q5VVM6 783 aa9.15□□□□□ -0.95
ZNF540-206ENST00000589117 FNBP4Q8N3X1 1017 aaPredicted RBP9.15□□□□□ -0.95
ZNF540-206ENST00000589117 IGSF1Q8N6C5 1336 aa9.14□□□□□ -0.95
ZNF540-206ENST00000589117 NALCNQ8IZF0 1738 aa9.14□□□□□ -0.95
ZNF540-206ENST00000589117 HSP90AB1P08238 724 aaKnown RBP9.14□□□□□ -0.95
ZNF540-206ENST00000589117 PTMSP20962 102 aa9.14□□□□□ -0.95
ZNF540-206ENST00000589117 TMEM92Q6UXU6 159 aa9.14□□□□□ -0.95
ZNF540-206ENST00000589117 ABTB2Q8N961 1025 aa9.14□□□□□ -0.95
ZNF540-206ENST00000589117 EYA1Q99502 592 aa9.14□□□□□ -0.95
ZNF540-206ENST00000589117 CRB1P82279 1406 aa9.14□□□□□ -0.95
ZNF540-206ENST00000589117 TBC1D9Q6ZT07 1266 aa9.14□□□□□ -0.95
ZNF540-206ENST00000589117 PROSER2Q86WR7 435 aaPredicted RBP9.14□□□□□ -0.95
ZNF540-206ENST00000589117 GNAI3P08754 354 aa9.13□□□□□ -0.95
ZNF540-206ENST00000589117 L1TD1Q5T7N2 865 aaKnown RBP9.13□□□□□ -0.95
ZNF540-206ENST00000589117 CHRDL2Q6WN34 429 aa9.13□□□□□ -0.95
ZNF540-206ENST00000589117 ANKLE2Q86XL3 938 aa9.13□□□□□ -0.95
ZNF540-206ENST00000589117 DDX11L8A8MPP1 907 aa9.13□□□□□ -0.95
ZNF540-206ENST00000589117 CEP85Q6P2H3 762 aa9.13□□□□□ -0.95
ZNF540-206ENST00000589117 PLEKHM2Q8IWE5 1019 aa9.13□□□□□ -0.95
ZNF540-206ENST00000589117 GNAI2P04899 355 aa9.12□□□□□ -0.95
ZNF540-206ENST00000589117 KCNA6P17658 529 aa9.12□□□□□ -0.95
ZNF540-206ENST00000589117 HOXC9P31274 260 aa9.12□□□□□ -0.95
ZNF540-206ENST00000589117 MDM2Q00987 491 aaPredicted RBP9.12□□□□□ -0.95
ZNF540-206ENST00000589117 SH3D19Q5HYK7 790 aa9.12□□□□□ -0.95
ZNF540-206ENST00000589117 SLC4A10Q6U841 1118 aa9.12□□□□□ -0.95
ZNF540-206ENST00000589117 TMUB1Q9BVT8 246 aa9.12□□□□□ -0.95
ZNF540-206ENST00000589117 RGPD1P0DJD0 1748 aa9.12□□□□□ -0.95
ZNF540-206ENST00000589117 REC8O95072 547 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 MCM4P33991 863 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 TIE1P35590 1138 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 TAF7Q15545 349 aaPredicted RBP9.11□□□□□ -0.95
ZNF540-206ENST00000589117 KRT24Q2M2I5 525 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 TTC22Q5TAA0 569 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 GBP4Q96PP9 640 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 CCDC9Q9Y3X0 531 aaKnown RBP9.11□□□□□ -0.95
ZNF540-206ENST00000589117 RTL1A6NKG5 1358 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 KCNH5Q8NCM2 988 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 NPDC1Q9NQX5 325 aaPredicted RBP9.11□□□□□ -0.95
ZNF540-206ENST00000589117 POLR3EQ9NVU0 708 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 MIS18AQ9NYP9 233 aa9.11□□□□□ -0.95
ZNF540-206ENST00000589117 PEAK1Q9H792 1746 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 FER1L4A9Z1Z3 1794 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 PTGER2P43116 358 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 RABEP1Q15276 862 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 MEIS3Q99687 375 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 K7ELQ4 463 aaPredicted RBP9.1□□□□□ -0.95
ZNF540-206ENST00000589117 FOXO3O43524 673 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 PSME1Q06323 249 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 FKBP5Q13451 457 aaPredicted RBP9.1□□□□□ -0.95
ZNF540-206ENST00000589117 TMEM121BQ9BXQ6 578 aaPredicted RBP9.1□□□□□ -0.95
ZNF540-206ENST00000589117 MSH6P52701 1360 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 MAP3K5Q99683 1374 aa9.1□□□□□ -0.95
ZNF540-206ENST00000589117 RIMS1Q86UR5 1692 aaKnown RBP9.09□□□□□ -0.95
ZNF540-206ENST00000589117 RGS12O14924 1447 aa9.09□□□□□ -0.95
ZNF540-206ENST00000589117 GOLGA6L22H0YM25 854 aa9.09□□□□□ -0.95
ZNF540-206ENST00000589117 SKOR2Q2VWA4 1001 aaPredicted RBP9.09□□□□□ -0.95
ZNF540-206ENST00000589117 FMN2Q9NZ56 1722 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 ATP10DQ9P241 1426 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 GALR2O43603 387 aaPredicted RBP9.08□□□□□ -0.96
ZNF540-206ENST00000589117 NUTM2GQ5VZR2 741 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 KCTD17Q8N5Z5 321 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 IP6K1Q92551 441 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 SRCIN1Q9C0H9 1055 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 XRN1Q8IZH2 1706 aaKnown RBP9.08□□□□□ -0.96
ZNF540-206ENST00000589117 ST18O60284 1047 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 GSPT1P15170 499 aaKnown RBP9.08□□□□□ -0.96
ZNF540-206ENST00000589117 LTV1Q96GA3 475 aaPredicted RBP9.08□□□□□ -0.96
ZNF540-206ENST00000589117 LRRCC1Q9C099 1032 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 OSBPL3Q9H4L5 887 aa9.08□□□□□ -0.96
ZNF540-206ENST00000589117 ISY1Q9ULR0 285 aaKnown RBP9.08□□□□□ -0.96
ZNF540-206ENST00000589117 EVI5O60447 810 aa9.07□□□□□ -0.96
ZNF540-206ENST00000589117 HOXB7P09629 217 aa9.07□□□□□ -0.96
ZNF540-206ENST00000589117 HDAC5Q9UQL6 1122 aa9.07□□□□□ -0.96
ZNF540-206ENST00000589117 BOLA1Q9Y3E2 137 aa9.07□□□□□ -0.96
ZNF540-206ENST00000589117 NCOA3Q9Y6Q9 1424 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms