RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 RBM46Q8TBY0 533 aaKnown RBP18.92■□□□□ 0.62
VMP1-209ENST00000588915 CHRNA5P30532 468 aa18.91■□□□□ 0.62
VMP1-209ENST00000588915 NMRK2Q9NPI5 230 aa18.91■□□□□ 0.62
VMP1-209ENST00000588915 KDM2BQ8NHM5 1336 aa18.91■□□□□ 0.62
VMP1-209ENST00000588915 COL15A1P39059 1388 aa18.91■□□□□ 0.62
VMP1-209ENST00000588915 NPC1L1Q9UHC9 1359 aa18.91■□□□□ 0.62
VMP1-209ENST00000588915 STARD3NLO95772 234 aa18.9■□□□□ 0.62
VMP1-209ENST00000588915 NFIXQ14938 502 aa18.9■□□□□ 0.62
VMP1-209ENST00000588915 ZBTB1Q9Y2K1 713 aa18.9■□□□□ 0.62
VMP1-209ENST00000588915 KCPQ6ZWJ8 1503 aa18.9■□□□□ 0.62
VMP1-209ENST00000588915 C16orf71Q8IYS4 520 aaPredicted RBP18.89■□□□□ 0.61
VMP1-209ENST00000588915 TEX13AQ9BXU3 409 aaPredicted RBP18.89■□□□□ 0.61
VMP1-209ENST00000588915 RNF181Q9P0P0 153 aa18.89■□□□□ 0.61
VMP1-209ENST00000588915 ZC3H4Q9UPT8 1303 aaKnown RBP18.89■□□□□ 0.61
VMP1-209ENST00000588915 A0A087WZG4 1122 aa18.88■□□□□ 0.61
VMP1-209ENST00000588915 SERPINB2P05120 415 aa18.88■□□□□ 0.61
VMP1-209ENST00000588915 FSTL1Q12841 308 aa18.88■□□□□ 0.61
VMP1-209ENST00000588915 CC2D1BQ5T0F9 858 aaKnown RBP18.88■□□□□ 0.61
VMP1-209ENST00000588915 TTC5Q8N0Z6 440 aa18.88■□□□□ 0.61
VMP1-209ENST00000588915 DNAJC5GQ8N7S2 189 aa18.88■□□□□ 0.61
VMP1-209ENST00000588915 BCL2L12Q9HB09 334 aa18.88■□□□□ 0.61
VMP1-209ENST00000588915 GAS2L2Q8NHY3 880 aa18.87■□□□□ 0.61
VMP1-209ENST00000588915 GNAT3A8MTJ3 354 aa18.86■□□□□ 0.61
VMP1-209ENST00000588915 EIF5P55010 431 aaKnown RBP18.86■□□□□ 0.61
VMP1-209ENST00000588915 PDZRN3Q9UPQ7 1066 aa18.86■□□□□ 0.61
VMP1-209ENST00000588915 NRXN2Q9P2S2 1712 aa18.86■□□□□ 0.61
VMP1-209ENST00000588915 TEFQ10587 303 aa18.85■□□□□ 0.61
VMP1-209ENST00000588915 ZNF790Q6PG37 636 aa18.85■□□□□ 0.61
VMP1-209ENST00000588915 TTLL6Q8N841 843 aa18.85■□□□□ 0.61
VMP1-209ENST00000588915 VIRMAQ69YN4 1812 aaKnown RBP18.85■□□□□ 0.61
VMP1-209ENST00000588915 LMNB1P20700 586 aa18.84■□□□□ 0.61
VMP1-209ENST00000588915 CANXP27824 592 aaKnown RBP18.84■□□□□ 0.61
VMP1-209ENST00000588915 IL17REQ8NFR9 667 aa18.84■□□□□ 0.61
VMP1-209ENST00000588915 AFDNP55196 1824 aaKnown RBP18.84■□□□□ 0.61
VMP1-209ENST00000588915 UBR2Q8IWV8 1755 aa18.83■□□□□ 0.61
VMP1-209ENST00000588915 H0YIN7 160 aa18.83■□□□□ 0.6
VMP1-209ENST00000588915 RRAGCQ9HB90 399 aa18.83■□□□□ 0.6
VMP1-209ENST00000588915 SBF1O95248 1867 aa18.83■□□□□ 0.6
VMP1-209ENST00000588915 HEG1Q9ULI3 1381 aa18.82■□□□□ 0.6
VMP1-209ENST00000588915 U2SURPO15042 1029 aaKnown RBP18.82■□□□□ 0.6
VMP1-209ENST00000588915 IL6STP40189 918 aaPredicted RBP18.82■□□□□ 0.6
VMP1-209ENST00000588915 ZNF496Q96IT1 587 aaPredicted RBP18.82■□□□□ 0.6
VMP1-209ENST00000588915 COL3A1P02461 1466 aaPredicted RBP18.82■□□□□ 0.6
VMP1-209ENST00000588915 C2CD5Q86YS7 1000 aa18.81■□□□□ 0.6
VMP1-209ENST00000588915 FMNL2Q96PY5 1086 aa18.8■□□□□ 0.6
VMP1-209ENST00000588915 GLTPD2A6NH11 291 aa18.79■□□□□ 0.6
VMP1-209ENST00000588915 PDE6BP35913 854 aa18.79■□□□□ 0.6
VMP1-209ENST00000588915 NPM2Q86SE8 214 aaKnown RBP18.79■□□□□ 0.6
VMP1-209ENST00000588915 BRIP1Q9BX63 1249 aa18.79■□□□□ 0.6
VMP1-209ENST00000588915 CEMIPQ8WUJ3 1361 aa18.79■□□□□ 0.6
VMP1-209ENST00000588915 TNRC6CQ9HCJ0 1690 aaKnown RBP18.79■□□□□ 0.6
VMP1-209ENST00000588915 DLEC1Q9Y238 1755 aa18.78■□□□□ 0.6
VMP1-209ENST00000588915 RASSF7Q02833 373 aa18.78■□□□□ 0.6
VMP1-209ENST00000588915 BICDL1Q6ZP65 573 aa18.78■□□□□ 0.6
VMP1-209ENST00000588915 SMC1BQ8NDV3 1235 aa18.78■□□□□ 0.6
VMP1-209ENST00000588915 KLRG1Q96E93 195 aa18.78■□□□□ 0.6
VMP1-209ENST00000588915 VEGFAP15692 232 aaPredicted RBP18.77■□□□□ 0.6
VMP1-209ENST00000588915 TBC1D9BQ66K14 1250 aa18.77■□□□□ 0.6
VMP1-209ENST00000588915 CFAP53Q96M91 514 aa18.77■□□□□ 0.6
VMP1-209ENST00000588915 WDR90Q96KV7 1748 aa18.77■□□□□ 0.59
VMP1-209ENST00000588915 JMYQ8N9B5 988 aa18.76■□□□□ 0.59
VMP1-209ENST00000588915 TBC1D2BQ9UPU7 963 aa18.76■□□□□ 0.59
VMP1-209ENST00000588915 NUDCQ9Y266 331 aa18.76■□□□□ 0.59
VMP1-209ENST00000588915 CARMIL3Q8ND23 1372 aa18.76■□□□□ 0.59
VMP1-209ENST00000588915 BTBD11A6QL63 1104 aa18.75■□□□□ 0.59
VMP1-209ENST00000588915 NFKBIEO00221 500 aa18.75■□□□□ 0.59
VMP1-209ENST00000588915 PRELPP51888 382 aa18.75■□□□□ 0.59
VMP1-209ENST00000588915 PRR5LQ6MZQ0 368 aa18.75■□□□□ 0.59
VMP1-209ENST00000588915 DPY19L2Q6NUT2 758 aa18.75■□□□□ 0.59
VMP1-209ENST00000588915 SETDB2Q96T68 719 aa18.75■□□□□ 0.59
VMP1-209ENST00000588915 SIPA1L3O60292 1781 aaPredicted RBP18.75■□□□□ 0.59
VMP1-209ENST00000588915 A1BGP04217 495 aa18.74■□□□□ 0.59
VMP1-209ENST00000588915 PHACTR3Q96KR7 559 aa18.74■□□□□ 0.59
VMP1-209ENST00000588915 RSPH6AQ9H0K4 717 aa18.74■□□□□ 0.59
VMP1-209ENST00000588915 CAMTA2O94983 1202 aa18.73■□□□□ 0.59
VMP1-209ENST00000588915 PRKAR2BP31323 418 aa18.73■□□□□ 0.59
VMP1-209ENST00000588915 CLEC4GQ6UXB4 293 aa18.73■□□□□ 0.59
VMP1-209ENST00000588915 ZNF622Q969S3 477 aaKnown RBP eCLIP18.73■□□□□ 0.59
VMP1-209ENST00000588915 RGL2O15211 777 aa18.72■□□□□ 0.59
VMP1-209ENST00000588915 CNKSR1Q969H4 720 aa18.72■□□□□ 0.59
VMP1-209ENST00000588915 ZNF330Q9Y3S2 320 aaPredicted RBP18.72■□□□□ 0.59
VMP1-209ENST00000588915 LTBP3Q9NS15 1303 aa18.72■□□□□ 0.59
VMP1-209ENST00000588915 SCN7AQ01118 1682 aa18.71■□□□□ 0.59
VMP1-209ENST00000588915 HTATSF1O43719 755 aaKnown RBP18.71■□□□□ 0.59
VMP1-209ENST00000588915 ST5P78524 1137 aa18.71■□□□□ 0.59
VMP1-209ENST00000588915 STYK1Q6J9G0 422 aa18.71■□□□□ 0.59
VMP1-209ENST00000588915 CNBD1Q8NA66 436 aa18.71■□□□□ 0.59
VMP1-209ENST00000588915 KCNQ3O43525 872 aa18.7■□□□□ 0.58
VMP1-209ENST00000588915 C21orf2O43822 256 aa18.7■□□□□ 0.58
VMP1-209ENST00000588915 SNRPA1P09661 255 aaKnown RBP18.7■□□□□ 0.58
VMP1-209ENST00000588915 CNGB1Q14028 1251 aaPredicted RBP18.7■□□□□ 0.58
VMP1-209ENST00000588915 SOGA3Q5TF21 947 aa18.7■□□□□ 0.58
VMP1-209ENST00000588915 DZIP3Q86Y13 1208 aaKnown RBP18.7■□□□□ 0.58
VMP1-209ENST00000588915 RTF1Q92541 710 aaKnown RBP18.7■□□□□ 0.58
VMP1-209ENST00000588915 USP16Q9Y5T5 823 aa18.7■□□□□ 0.58
VMP1-209ENST00000588915 ANKRD31Q8N7Z5 1873 aa18.69■□□□□ 0.58
VMP1-209ENST00000588915 SRGNP10124 158 aa18.69■□□□□ 0.58
VMP1-209ENST00000588915 HTRA3P83110 453 aa18.69■□□□□ 0.58
VMP1-209ENST00000588915 ERFEQ4G0M1 354 aa18.69■□□□□ 0.58
VMP1-209ENST00000588915 CCDC88AQ3V6T2 1871 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms