RNA–Protein interactions for RNA: ENST00000586548.5

CIRBP-208, Transcript of cold inducible RNA binding protein, human

TSL 3

Gene CIRBP, Length 1,734 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIRBP-208	ENST00000586548	USP44	Q9H0E7	712 aa		27.8	■■■□□ 2.04
CIRBP-208	ENST00000586548	SNRPA1	P09661	255 aa	Known RBP	27.79	■■■□□ 2.04
CIRBP-208	ENST00000586548	BEND3	Q5T5X7	828 aa		27.79	■■■□□ 2.04
CIRBP-208	ENST00000586548	PAPPA	Q13219	1627 aa		27.79	■■■□□ 2.04
CIRBP-208	ENST00000586548	UBAP1L	F5GYI3	381 aa		27.78	■■■□□ 2.04
CIRBP-208	ENST00000586548	UBR2	Q8IWV8	1755 aa		27.78	■■■□□ 2.04
CIRBP-208	ENST00000586548	UBTFL1	P0CB47	393 aa	Predicted RBP	27.78	■■■□□ 2.04
CIRBP-208	ENST00000586548	PDIA6	Q15084	440 aa		27.78	■■■□□ 2.04
CIRBP-208	ENST00000586548	KSR2	Q6VAB6	950 aa		27.78	■■■□□ 2.04
CIRBP-208	ENST00000586548	DISP2	A7MBM2	1401 aa		27.77	■■■□□ 2.04
CIRBP-208	ENST00000586548	ZBTB47	Q9UFB7	747 aa	Predicted RBP	27.76	■■■□□ 2.03
CIRBP-208	ENST00000586548	DDX58	O95786	925 aa	Known RBP	27.75	■■■□□ 2.03
CIRBP-208	ENST00000586548	DDX54	Q8TDD1	881 aa	Known RBP	27.75	■■■□□ 2.03
CIRBP-208	ENST00000586548	ATP8B2	P98198	1209 aa		27.75	■■■□□ 2.03
CIRBP-208	ENST00000586548	MAP3K2	Q9Y2U5	619 aa		27.75	■■■□□ 2.03
CIRBP-208	ENST00000586548	LRRFIP2	Q9Y608	721 aa	Known RBP	27.75	■■■□□ 2.03
CIRBP-208	ENST00000586548	TOGARAM1	Q9Y4F4	1720 aa		27.74	■■■□□ 2.03
CIRBP-208	ENST00000586548	WNK3	Q9BYP7	1800 aa		27.74	■■■□□ 2.03
CIRBP-208	ENST00000586548	ALDH1L1	O75891	902 aa		27.74	■■■□□ 2.03
CIRBP-208	ENST00000586548	BMP2KL	Q5H9B9	411 aa		27.73	■■■□□ 2.03
CIRBP-208	ENST00000586548	USP35	Q9P2H5	1018 aa		27.73	■■■□□ 2.03
CIRBP-208	ENST00000586548	PIP4K2B	P78356	416 aa		27.72	■■■□□ 2.03
CIRBP-208	ENST00000586548	DDRGK1	Q96HY6	314 aa		27.72	■■■□□ 2.03
CIRBP-208	ENST00000586548	SEC24B	O95487	1268 aa		27.71	■■■□□ 2.03
CIRBP-208	ENST00000586548	KCP	Q6ZWJ8	1503 aa		27.71	■■■□□ 2.03
CIRBP-208	ENST00000586548	NRAP	Q86VF7	1730 aa		27.71	■■■□□ 2.03
CIRBP-208	ENST00000586548	USP16	Q9Y5T5	823 aa		27.7	■■■□□ 2.03
CIRBP-208	ENST00000586548	TNS2	Q63HR2	1409 aa		27.7	■■■□□ 2.02
CIRBP-208	ENST00000586548	NOP58	Q9Y2X3	529 aa	Known RBP	27.7	■■■□□ 2.02
CIRBP-208	ENST00000586548	IBTK	Q9P2D0	1353 aa	Predicted RBP	27.69	■■■□□ 2.02
CIRBP-208	ENST00000586548	ERBB4	Q15303	1308 aa		27.68	■■■□□ 2.02
CIRBP-208	ENST00000586548	PNMA6E	A0A0J9YXQ4	647 aa		27.68	■■■□□ 2.02
CIRBP-208	ENST00000586548	PLEKHM2	Q8IWE5	1019 aa		27.68	■■■□□ 2.02
CIRBP-208	ENST00000586548	UPF2	Q9HAU5	1272 aa	Known RBP	27.68	■■■□□ 2.02
CIRBP-208	ENST00000586548	LRP10	Q7Z4F1	713 aa		27.67	■■■□□ 2.02
CIRBP-208	ENST00000586548	LINS1	Q8NG48	757 aa		27.67	■■■□□ 2.02
CIRBP-208	ENST00000586548	MYL6B	P14649	208 aa		27.67	■■■□□ 2.02
CIRBP-208	ENST00000586548	LRP6	O75581	1613 aa		27.66	■■■□□ 2.02
CIRBP-208	ENST00000586548	NBPF7	P0C2Y1	421 aa	Predicted RBP	27.66	■■■□□ 2.02
CIRBP-208	ENST00000586548	AIMP1	Q12904	312 aa	Known RBP	27.66	■■■□□ 2.02
CIRBP-208	ENST00000586548	SSH3	Q8TE77	659 aa		27.66	■■■□□ 2.02
CIRBP-208	ENST00000586548	XAGE3	Q8WTP9	111 aa		27.66	■■■□□ 2.02
CIRBP-208	ENST00000586548	HDAC5	Q9UQL6	1122 aa		27.65	■■■□□ 2.02
CIRBP-208	ENST00000586548	ERICH6	Q7L0X2	663 aa		27.64	■■■□□ 2.02
CIRBP-208	ENST00000586548	TMOD3	Q9NYL9	352 aa		27.64	■■■□□ 2.02
CIRBP-208	ENST00000586548	NWD2	Q9ULI1	1742 aa		27.64	■■■□□ 2.01
CIRBP-208	ENST00000586548	COPS6	Q7L5N1	327 aa		27.64	■■■□□ 2.01
CIRBP-208	ENST00000586548	RIC3	Q7Z5B4	369 aa		27.64	■■■□□ 2.01
CIRBP-208	ENST00000586548	POLA2	Q14181	598 aa		27.63	■■■□□ 2.01
CIRBP-208	ENST00000586548	SMARCA5	O60264	1052 aa	Predicted RBP	27.62	■■■□□ 2.01
CIRBP-208	ENST00000586548	ADAMTS2	O95450	1211 aa		27.62	■■■□□ 2.01
CIRBP-208	ENST00000586548	C9orf78	Q9NZ63	289 aa	Predicted RBP	27.62	■■■□□ 2.01
CIRBP-208	ENST00000586548	EXOC6B	Q9Y2D4	811 aa		27.62	■■■□□ 2.01
CIRBP-208	ENST00000586548	ITGB4	P16144	1822 aa		27.62	■■■□□ 2.01
CIRBP-208	ENST00000586548	APBB1	O00213	710 aa		27.61	■■■□□ 2.01
CIRBP-208	ENST00000586548	PPP1R42	Q7Z4L9	355 aa		27.61	■■■□□ 2.01
CIRBP-208	ENST00000586548	C16orf71	Q8IYS4	520 aa	Predicted RBP	27.61	■■■□□ 2.01
CIRBP-208	ENST00000586548	CDCA7	Q9BWT1	371 aa	Predicted RBP	27.61	■■■□□ 2.01
CIRBP-208	ENST00000586548	UTY	O14607	1347 aa		27.61	■■■□□ 2.01
CIRBP-208	ENST00000586548	NEXN	Q0ZGT2	675 aa		27.61	■■■□□ 2.01
CIRBP-208	ENST00000586548	CWF19L2	Q2TBE0	894 aa	Known RBP	27.61	■■■□□ 2.01
CIRBP-208	ENST00000586548	LRRCC1	Q9C099	1032 aa		27.61	■■■□□ 2.01
CIRBP-208	ENST00000586548	ARFGEF2	Q9Y6D5	1785 aa		27.6	■■■□□ 2.01
CIRBP-208	ENST00000586548	TTC22	Q5TAA0	569 aa		27.6	■■■□□ 2.01
CIRBP-208	ENST00000586548	ANKRD13D	Q6ZTN6	518 aa		27.6	■■■□□ 2.01
CIRBP-208	ENST00000586548	TBC1D32	Q96NH3	1257 aa		27.6	■■■□□ 2.01
CIRBP-208	ENST00000586548	METTL22	Q9BUU2	404 aa	Predicted RBP	27.6	■■■□□ 2.01
CIRBP-208	ENST00000586548	THRAP3	Q9Y2W1	955 aa	Known RBP	27.6	■■■□□ 2.01
CIRBP-208	ENST00000586548	MTX1	Q13505	466 aa		27.59	■■■□□ 2.01
CIRBP-208	ENST00000586548	GRM8	O00222	908 aa		27.58	■■■□□ 2.01
CIRBP-208	ENST00000586548	EXOC5	O00471	708 aa		27.58	■■■□□ 2.01
CIRBP-208	ENST00000586548	SPATA31A1	Q5TZJ5	1347 aa		27.58	■■■□□ 2.01
CIRBP-208	ENST00000586548	SRGAP3	O43295	1099 aa		27.57	■■■□□ 2
CIRBP-208	ENST00000586548	IGKV5-2	P06315	115 aa		27.57	■■■□□ 2
CIRBP-208	ENST00000586548	GSPT1	P15170	499 aa	Known RBP	27.57	■■■□□ 2
CIRBP-208	ENST00000586548	OTUD7A	Q8TE49	926 aa	Predicted RBP	27.57	■■■□□ 2
CIRBP-208	ENST00000586548	SLIT2	O94813	1529 aa		27.57	■■■□□ 2
CIRBP-208	ENST00000586548	PTCD1	O75127	700 aa	Known RBP	27.56	■■■□□ 2
CIRBP-208	ENST00000586548	RAB11FIP3	O75154	756 aa		27.56	■■■□□ 2
CIRBP-208	ENST00000586548	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.55	■■■□□ 2
CIRBP-208	ENST00000586548	NEURL1B	A8MQ27	555 aa		27.55	■■■□□ 2
CIRBP-208	ENST00000586548	NUTM2E	B1AL46	878 aa	Predicted RBP	27.55	■■■□□ 2
CIRBP-208	ENST00000586548	PIP4K2A	P48426	406 aa	Predicted RBP	27.55	■■■□□ 2
CIRBP-208	ENST00000586548	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.55	■■■□□ 2
CIRBP-208	ENST00000586548	OSBPL3	Q9H4L5	887 aa		27.55	■■■□□ 2
CIRBP-208	ENST00000586548	NBPF26	B4DH59	902 aa		27.55	■■■□□ 2
CIRBP-208	ENST00000586548	NBPF14	Q5TI25	921 aa		27.55	■■■□□ 2
CIRBP-208	ENST00000586548	NBPF10	Q6P3W6	841 aa	Known RBP	27.55	■■■□□ 2
CIRBP-208	ENST00000586548	NBPF15	Q8N660	670 aa		27.55	■■■□□ 2
CIRBP-208	ENST00000586548	PIGB	Q92521	554 aa		27.55	■■■□□ 2
CIRBP-208	ENST00000586548	AFDN	P55196	1824 aa	Known RBP	27.54	■■■□□ 2
CIRBP-208	ENST00000586548	MFAP1	P55081	439 aa	Known RBP	27.54	■■■□□ 2
CIRBP-208	ENST00000586548	PLBD2	Q8NHP8	589 aa		27.54	■■■□□ 2
CIRBP-208	ENST00000586548	MYD88	Q99836	296 aa		27.54	■■■□□ 2
CIRBP-208	ENST00000586548	CDC45	O75419	566 aa		27.53	■■■□□ 2
CIRBP-208	ENST00000586548	VSIG10	Q8N0Z9	540 aa		27.53	■■■□□ 2
CIRBP-208	ENST00000586548	SALL3	Q9BXA9	1300 aa		27.53	■■■□□ 2
CIRBP-208	ENST00000586548	BCL9	O00512	1426 aa		27.53	■■■□□ 2
CIRBP-208	ENST00000586548	NUP188	Q5SRE5	1749 aa		27.52	■■■□□ 2
CIRBP-208	ENST00000586548	GCKR	Q14397	625 aa		27.52	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms