RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 VIRMAQ69YN4 1812 aaKnown RBP18.45■□□□□ 0.54
SS18-222ENST00000582792 RNMTO43148 476 aaKnown RBP18.45■□□□□ 0.54
SS18-222ENST00000582792 AMER1Q5JTC6 1135 aaPredicted RBP18.45■□□□□ 0.54
SS18-222ENST00000582792 AFDNP55196 1824 aaKnown RBP18.44■□□□□ 0.54
SS18-222ENST00000582792 TNRC6CQ9HCJ0 1690 aaKnown RBP18.44■□□□□ 0.54
SS18-222ENST00000582792 NRXN2Q9P2S2 1712 aa18.44■□□□□ 0.54
SS18-222ENST00000582792 FSTL1Q12841 308 aa18.44■□□□□ 0.54
SS18-222ENST00000582792 SLC39A6Q13433 755 aa18.44■□□□□ 0.54
SS18-222ENST00000582792 NARFQ9UHQ1 456 aa18.44■□□□□ 0.54
SS18-222ENST00000582792 COL15A1P39059 1388 aa18.43■□□□□ 0.54
SS18-222ENST00000582792 NFIXQ14938 502 aa18.43■□□□□ 0.54
SS18-222ENST00000582792 HMOX1P09601 288 aa18.42■□□□□ 0.54
SS18-222ENST00000582792 RRAGCQ9HB90 399 aa18.42■□□□□ 0.54
SS18-222ENST00000582792 ZBTB1Q9Y2K1 713 aa18.42■□□□□ 0.54
SS18-222ENST00000582792 DLEC1Q9Y238 1755 aa18.41■□□□□ 0.54
SS18-222ENST00000582792 VSIG10Q8N0Z9 540 aa18.41■□□□□ 0.54
SS18-222ENST00000582792 ZC3H4Q9UPT8 1303 aaKnown RBP18.41■□□□□ 0.54
SS18-222ENST00000582792 UBR2Q8IWV8 1755 aa18.4■□□□□ 0.54
SS18-222ENST00000582792 HTRA3P83110 453 aa18.4■□□□□ 0.54
SS18-222ENST00000582792 RASSF7Q02833 373 aa18.4■□□□□ 0.54
SS18-222ENST00000582792 MTHFSDQ2M296 383 aaKnown RBP18.4■□□□□ 0.54
SS18-222ENST00000582792 KLRG1Q96E93 195 aa18.4■□□□□ 0.54
SS18-222ENST00000582792 BCL2L12Q9HB09 334 aa18.4■□□□□ 0.54
SS18-222ENST00000582792 PCNTO95613 3336 aa18.4■□□□□ 0.54
SS18-222ENST00000582792 SERPINB2P05120 415 aa18.39■□□□□ 0.53
SS18-222ENST00000582792 LMNB1P20700 586 aa18.38■□□□□ 0.53
SS18-222ENST00000582792 DIAPH1O60610 1272 aaKnown RBP18.37■□□□□ 0.53
SS18-222ENST00000582792 TTLL6Q8N841 843 aa18.37■□□□□ 0.53
SS18-222ENST00000582792 JMYQ8N9B5 988 aa18.37■□□□□ 0.53
SS18-222ENST00000582792 CANXP27824 592 aaKnown RBP18.36■□□□□ 0.53
SS18-222ENST00000582792 PRELPP51888 382 aa18.36■□□□□ 0.53
SS18-222ENST00000582792 KIF7Q2M1P5 1343 aa18.36■□□□□ 0.53
SS18-222ENST00000582792 SMC1BQ8NDV3 1235 aa18.36■□□□□ 0.53
SS18-222ENST00000582792 CARMIL3Q8ND23 1372 aa18.35■□□□□ 0.53
SS18-222ENST00000582792 STARD3NLO95772 234 aa18.35■□□□□ 0.53
SS18-222ENST00000582792 EIF5P55010 431 aaKnown RBP18.35■□□□□ 0.53
SS18-222ENST00000582792 C2CD5Q86YS7 1000 aa18.35■□□□□ 0.53
SS18-222ENST00000582792 GLTPD2A6NH11 291 aa18.34■□□□□ 0.53
SS18-222ENST00000582792 H0YIN7 160 aa18.34■□□□□ 0.53
SS18-222ENST00000582792 PER1O15534 1290 aaPredicted RBP18.34■□□□□ 0.53
SS18-222ENST00000582792 TTC5Q8N0Z6 440 aa18.34■□□□□ 0.53
SS18-222ENST00000582792 TIAM2Q8IVF5 1701 aa18.34■□□□□ 0.53
SS18-222ENST00000582792 A0A087WZG4 1122 aa18.33■□□□□ 0.52
SS18-222ENST00000582792 VEGFAP15692 232 aaPredicted RBP18.33■□□□□ 0.52
SS18-222ENST00000582792 BICDL1Q6ZP65 573 aa18.33■□□□□ 0.52
SS18-222ENST00000582792 SCN7AQ01118 1682 aa18.32■□□□□ 0.52
SS18-222ENST00000582792 NFKBIEO00221 500 aa18.32■□□□□ 0.52
SS18-222ENST00000582792 CCDC88AQ3V6T2 1871 aa18.32■□□□□ 0.52
SS18-222ENST00000582792 COL3A1P02461 1466 aaPredicted RBP18.32■□□□□ 0.52
SS18-222ENST00000582792 HEG1Q9ULI3 1381 aa18.31■□□□□ 0.52
SS18-222ENST00000582792 ANKRD31Q8N7Z5 1873 aa18.31■□□□□ 0.52
SS18-222ENST00000582792 CC2D1BQ5T0F9 858 aaKnown RBP18.31■□□□□ 0.52
SS18-222ENST00000582792 TBC1D9BQ66K14 1250 aa18.31■□□□□ 0.52
SS18-222ENST00000582792 ZNF496Q96IT1 587 aaPredicted RBP18.31■□□□□ 0.52
SS18-222ENST00000582792 SIPA1L3O60292 1781 aaPredicted RBP18.3■□□□□ 0.52
SS18-222ENST00000582792 TEFQ10587 303 aa18.3■□□□□ 0.52
SS18-222ENST00000582792 ZNF790Q6PG37 636 aa18.3■□□□□ 0.52
SS18-222ENST00000582792 IL17REQ8NFR9 667 aa18.3■□□□□ 0.52
SS18-222ENST00000582792 BRIP1Q9BX63 1249 aa18.3■□□□□ 0.52
SS18-222ENST00000582792 TEX13AQ9BXU3 409 aaPredicted RBP18.3■□□□□ 0.52
SS18-222ENST00000582792 PDZRN3Q9UPQ7 1066 aa18.3■□□□□ 0.52
SS18-222ENST00000582792 GNAT3A8MTJ3 354 aa18.29■□□□□ 0.52
SS18-222ENST00000582792 COL13A1Q5TAT6 717 aaPredicted RBP18.29■□□□□ 0.52
SS18-222ENST00000582792 GAS2L2Q8NHY3 880 aa18.29■□□□□ 0.52
SS18-222ENST00000582792 PDE6BP35913 854 aa18.28■□□□□ 0.52
SS18-222ENST00000582792 IL6STP40189 918 aaPredicted RBP18.28■□□□□ 0.52
SS18-222ENST00000582792 TBC1D2BQ9UPU7 963 aa18.28■□□□□ 0.52
SS18-222ENST00000582792 COL11A2P13942 1736 aaPredicted RBP18.28■□□□□ 0.52
SS18-222ENST00000582792 U2SURPO15042 1029 aaKnown RBP18.27■□□□□ 0.52
SS18-222ENST00000582792 PRR5LQ6MZQ0 368 aa18.27■□□□□ 0.52
SS18-222ENST00000582792 ZNF622Q969S3 477 aaKnown RBP eCLIP18.27■□□□□ 0.52
SS18-222ENST00000582792 NPC1L1Q9UHC9 1359 aa18.27■□□□□ 0.51
SS18-222ENST00000582792 FER1L6Q2WGJ9 1857 aa18.26■□□□□ 0.51
SS18-222ENST00000582792 DICER1Q9UPY3 1922 aaKnown RBP18.26■□□□□ 0.51
SS18-222ENST00000582792 POTECB2RU33 542 aa18.26■□□□□ 0.51
SS18-222ENST00000582792 C21orf2O43822 256 aa18.26■□□□□ 0.51
SS18-222ENST00000582792 DPY19L2Q6NUT2 758 aa18.26■□□□□ 0.51
SS18-222ENST00000582792 FMNL2Q96PY5 1086 aa18.26■□□□□ 0.51
SS18-222ENST00000582792 ZNF330Q9Y3S2 320 aaPredicted RBP18.26■□□□□ 0.51
SS18-222ENST00000582792 CCDC24Q8N4L8 307 aa18.25■□□□□ 0.51
SS18-222ENST00000582792 CEMIPQ8WUJ3 1361 aa18.25■□□□□ 0.51
SS18-222ENST00000582792 CAMTA2O94983 1202 aa18.24■□□□□ 0.51
SS18-222ENST00000582792 ERFEQ4G0M1 354 aa18.24■□□□□ 0.51
SS18-222ENST00000582792 ZNF219Q9P2Y4 722 aaPredicted RBP18.24■□□□□ 0.51
SS18-222ENST00000582792 LTBP3Q9NS15 1303 aa18.23■□□□□ 0.51
SS18-222ENST00000582792 BCORQ6W2J9 1755 aa18.23■□□□□ 0.51
SS18-222ENST00000582792 A1BGP04217 495 aa18.23■□□□□ 0.51
SS18-222ENST00000582792 NPM2Q86SE8 214 aaKnown RBP18.23■□□□□ 0.51
SS18-222ENST00000582792 CNBD1Q8NA66 436 aa18.23■□□□□ 0.51
SS18-222ENST00000582792 SETDB2Q96T68 719 aa18.23■□□□□ 0.51
SS18-222ENST00000582792 TAOK3Q9H2K8 898 aa18.22■□□□□ 0.51
SS18-222ENST00000582792 NPHP1O15259 732 aa18.21■□□□□ 0.51
SS18-222ENST00000582792 SRGNP10124 158 aa18.21■□□□□ 0.51
SS18-222ENST00000582792 ST5P78524 1137 aa18.21■□□□□ 0.51
SS18-222ENST00000582792 STYK1Q6J9G0 422 aa18.21■□□□□ 0.51
SS18-222ENST00000582792 CNKSR1Q969H4 720 aa18.21■□□□□ 0.51
SS18-222ENST00000582792 ARFGEF2Q9Y6D5 1785 aa18.21■□□□□ 0.51
SS18-222ENST00000582792 SLX4Q8IY92 1834 aa18.21■□□□□ 0.51
SS18-222ENST00000582792 BTBD11A6QL63 1104 aa18.2■□□□□ 0.5
SS18-222ENST00000582792 KCNQ3O43525 872 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms