RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 TTC5Q8N0Z6 440 aa27.42■■□□□ 1.98
SHMT1-209ENST00000582653 NUDCQ9Y266 331 aa27.42■■□□□ 1.98
SHMT1-209ENST00000582653 N4BP2Q86UW6 1770 aaPredicted RBP27.41■■□□□ 1.98
SHMT1-209ENST00000582653 FCHSD2O94868 740 aa27.41■■□□□ 1.98
SHMT1-209ENST00000582653 PIM2Q9P1W9 311 aa27.41■■□□□ 1.98
SHMT1-209ENST00000582653 ZBTB1Q9Y2K1 713 aa27.41■■□□□ 1.98
SHMT1-209ENST00000582653 POLRMTO00411 1230 aaKnown RBP27.4■■□□□ 1.98
SHMT1-209ENST00000582653 STARD3NLO95772 234 aa27.4■■□□□ 1.98
SHMT1-209ENST00000582653 U2AF1L5P0DN76 240 aaPredicted RBP27.4■■□□□ 1.98
SHMT1-209ENST00000582653 U2AF1Q01081 240 aaKnown RBP eCLIP27.4■■□□□ 1.98
SHMT1-209ENST00000582653 ZNF790Q6PG37 636 aa27.4■■□□□ 1.98
SHMT1-209ENST00000582653 ARHGAP27Q6ZUM4 889 aa27.4■■□□□ 1.98
SHMT1-209ENST00000582653 TEX13AQ9BXU3 409 aaPredicted RBP27.39■■□□□ 1.98
SHMT1-209ENST00000582653 ZNF526Q8TF50 670 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-209ENST00000582653 ZNF496Q96IT1 587 aaPredicted RBP27.38■■□□□ 1.97
SHMT1-209ENST00000582653 CANXP27824 592 aaKnown RBP27.37■■□□□ 1.97
SHMT1-209ENST00000582653 COL15A1P39059 1388 aa27.36■■□□□ 1.97
SHMT1-209ENST00000582653 BCL2L12Q9HB09 334 aa27.36■■□□□ 1.97
SHMT1-209ENST00000582653 EIF5P55010 431 aaKnown RBP27.35■■□□□ 1.97
SHMT1-209ENST00000582653 NFIXQ14938 502 aa27.35■■□□□ 1.97
SHMT1-209ENST00000582653 CEMIPQ8WUJ3 1361 aa27.35■■□□□ 1.97
SHMT1-209ENST00000582653 DALRD3Q5D0E6 543 aaKnown RBP27.34■■□□□ 1.97
SHMT1-209ENST00000582653 HEG1Q9ULI3 1381 aa27.34■■□□□ 1.97
SHMT1-209ENST00000582653 A0A087WZG4 1122 aa27.33■■□□□ 1.97
SHMT1-209ENST00000582653 UBR2Q8IWV8 1755 aa27.32■■□□□ 1.96
SHMT1-209ENST00000582653 CHRNA5P30532 468 aa27.32■■□□□ 1.96
SHMT1-209ENST00000582653 FMNL2Q96PY5 1086 aa27.32■■□□□ 1.96
SHMT1-209ENST00000582653 BTBD11A6QL63 1104 aa27.31■■□□□ 1.96
SHMT1-209ENST00000582653 SERPINB2P05120 415 aa27.31■■□□□ 1.96
SHMT1-209ENST00000582653 KCNQ3O43525 872 aa27.3■■□□□ 1.96
SHMT1-209ENST00000582653 BRCA1P38398 1863 aaKnown RBP27.3■■□□□ 1.96
SHMT1-209ENST00000582653 MCM10Q7L590 875 aa27.29■■□□□ 1.96
SHMT1-209ENST00000582653 SIPA1L3O60292 1781 aaPredicted RBP27.29■■□□□ 1.96
SHMT1-209ENST00000582653 KIF3CO14782 793 aa27.28■■□□□ 1.96
SHMT1-209ENST00000582653 IL6STP40189 918 aaPredicted RBP27.28■■□□□ 1.96
SHMT1-209ENST00000582653 DCTN1Q14203 1278 aa27.27■■□□□ 1.96
SHMT1-209ENST00000582653 RTF1Q92541 710 aaKnown RBP27.27■■□□□ 1.96
SHMT1-209ENST00000582653 HTATSF1O43719 755 aaKnown RBP27.25■■□□□ 1.95
SHMT1-209ENST00000582653 A1BGP04217 495 aa27.25■■□□□ 1.95
SHMT1-209ENST00000582653 C9orf131Q5VYM1 1079 aa27.24■■□□□ 1.95
SHMT1-209ENST00000582653 TBC1D2BQ9UPU7 963 aa27.24■■□□□ 1.95
SHMT1-209ENST00000582653 ARFGEF1Q9Y6D6 1849 aa27.24■■□□□ 1.95
SHMT1-209ENST00000582653 BICDL1Q6ZP65 573 aa27.23■■□□□ 1.95
SHMT1-209ENST00000582653 USP16Q9Y5T5 823 aa27.23■■□□□ 1.95
SHMT1-209ENST00000582653 TBC1D9BQ66K14 1250 aa27.22■■□□□ 1.95
SHMT1-209ENST00000582653 NPM2Q86SE8 214 aaKnown RBP27.22■■□□□ 1.95
SHMT1-209ENST00000582653 NRXN2Q9P2S2 1712 aa27.21■■□□□ 1.95
SHMT1-209ENST00000582653 AFDNP55196 1824 aaKnown RBP27.21■■□□□ 1.95
SHMT1-209ENST00000582653 HSPA6P17066 643 aa27.21■■□□□ 1.95
SHMT1-209ENST00000582653 ZNF330Q9Y3S2 320 aaPredicted RBP27.21■■□□□ 1.95
SHMT1-209ENST00000582653 H0YIN7 160 aa27.2■■□□□ 1.94
SHMT1-209ENST00000582653 DDX10Q13206 875 aaKnown RBP27.2■■□□□ 1.94
SHMT1-209ENST00000582653 PRAMEF22A3QJZ6 481 aa27.19■■□□□ 1.94
SHMT1-209ENST00000582653 SNRPA1P09661 255 aaKnown RBP27.19■■□□□ 1.94
SHMT1-209ENST00000582653 C2CD5Q86YS7 1000 aa27.19■■□□□ 1.94
SHMT1-209ENST00000582653 TTLL6Q8N841 843 aa27.19■■□□□ 1.94
SHMT1-209ENST00000582653 TOMM70O94826 608 aa27.18■■□□□ 1.94
SHMT1-209ENST00000582653 TAF7Q15545 349 aaPredicted RBP27.18■■□□□ 1.94
SHMT1-209ENST00000582653 PLEKHF1Q96S99 279 aa27.18■■□□□ 1.94
SHMT1-209ENST00000582653 PDZRN3Q9UPQ7 1066 aa27.18■■□□□ 1.94
SHMT1-209ENST00000582653 CAMTA2O94983 1202 aa27.17■■□□□ 1.94
SHMT1-209ENST00000582653 BRIP1Q9BX63 1249 aa27.17■■□□□ 1.94
SHMT1-209ENST00000582653 SETDB2Q96T68 719 aa27.16■■□□□ 1.94
SHMT1-209ENST00000582653 MIS18AQ9NYP9 233 aa27.16■■□□□ 1.94
SHMT1-209ENST00000582653 RNF181Q9P0P0 153 aa27.16■■□□□ 1.94
SHMT1-209ENST00000582653 CEP350Q5VT06 3117 aa27.15■■□□□ 1.94
SHMT1-209ENST00000582653 NEFMP07197 916 aa27.15■■□□□ 1.94
SHMT1-209ENST00000582653 PDE6BP35913 854 aa27.15■■□□□ 1.94
SHMT1-209ENST00000582653 PIP4K2AP48426 406 aaPredicted RBP27.15■■□□□ 1.94
SHMT1-209ENST00000582653 NMRK2Q9NPI5 230 aa27.15■■□□□ 1.94
SHMT1-209ENST00000582653 PRR5LQ6MZQ0 368 aa27.14■■□□□ 1.94
SHMT1-209ENST00000582653 DZIP3Q86Y13 1208 aaKnown RBP27.14■■□□□ 1.94
SHMT1-209ENST00000582653 CARMIL3Q8ND23 1372 aa27.13■■□□□ 1.93
SHMT1-209ENST00000582653 RALBP1Q15311 655 aa27.13■■□□□ 1.93
SHMT1-209ENST00000582653 CLEC4GQ6UXB4 293 aa27.13■■□□□ 1.93
SHMT1-209ENST00000582653 KDM2BQ8NHM5 1336 aa27.11■■□□□ 1.93
SHMT1-209ENST00000582653 NFE2L2Q16236 605 aa27.1■■□□□ 1.93
SHMT1-209ENST00000582653 THUMPD2Q9BTF0 503 aaKnown RBP27.1■■□□□ 1.93
SHMT1-209ENST00000582653 PNNQ9H307 717 aaKnown RBP27.1■■□□□ 1.93
SHMT1-209ENST00000582653 LMNB1P20700 586 aa27.09■■□□□ 1.93
SHMT1-209ENST00000582653 CCDC24Q8N4L8 307 aa27.09■■□□□ 1.93
SHMT1-209ENST00000582653 ZNF622Q969S3 477 aaKnown RBP eCLIP27.09■■□□□ 1.93
SHMT1-209ENST00000582653 SBF1O95248 1867 aa27.08■■□□□ 1.93
SHMT1-209ENST00000582653 NBPF26B4DH59 902 aa27.08■■□□□ 1.93
SHMT1-209ENST00000582653 RASSF7Q02833 373 aa27.08■■□□□ 1.93
SHMT1-209ENST00000582653 NBPF10Q6P3W6 841 aaKnown RBP27.08■■□□□ 1.93
SHMT1-209ENST00000582653 NBPF15Q8N660 670 aa27.08■■□□□ 1.93
SHMT1-209ENST00000582653 PNISRQ8TF01 805 aaKnown RBP27.08■■□□□ 1.93
SHMT1-209ENST00000582653 ZC3H4Q9UPT8 1303 aaKnown RBP27.08■■□□□ 1.93
SHMT1-209ENST00000582653 DLG5Q8TDM6 1919 aa27.08■■□□□ 1.93
SHMT1-209ENST00000582653 RGL2O15211 777 aa27.07■■□□□ 1.92
SHMT1-209ENST00000582653 CNBD1Q8NA66 436 aa27.07■■□□□ 1.92
SHMT1-209ENST00000582653 MAPK8IP3Q9UPT6 1336 aa27.07■■□□□ 1.92
SHMT1-209ENST00000582653 SCN7AQ01118 1682 aa27.07■■□□□ 1.92
SHMT1-209ENST00000582653 PRELPP51888 382 aa27.06■■□□□ 1.92
SHMT1-209ENST00000582653 RBM46Q8TBY0 533 aaKnown RBP27.06■■□□□ 1.92
SHMT1-209ENST00000582653 RRAGCQ9HB90 399 aa27.06■■□□□ 1.92
SHMT1-209ENST00000582653 ZNF652Q9Y2D9 606 aa27.06■■□□□ 1.92
SHMT1-209ENST00000582653 DLEC1Q9Y238 1755 aa27.06■■□□□ 1.92
SHMT1-209ENST00000582653 NPHP1O15259 732 aa27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms