RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 DNAJC10Q8IXB1 793 aa17.51■□□□□ 0.39
SS18-219ENST00000581570 TNRC6CQ9HCJ0 1690 aaKnown RBP17.51■□□□□ 0.39
SS18-219ENST00000581570 NFIXQ14938 502 aa17.5■□□□□ 0.39
SS18-219ENST00000581570 TTLL6Q8N841 843 aa17.5■□□□□ 0.39
SS18-219ENST00000581570 SOS1Q07889 1333 aaPredicted RBP17.49■□□□□ 0.39
SS18-219ENST00000581570 SERPINB2P05120 415 aa17.48■□□□□ 0.39
SS18-219ENST00000581570 SULT6B1Q6IMI4 303 aa17.48■□□□□ 0.39
SS18-219ENST00000581570 NARFQ9UHQ1 456 aa17.48■□□□□ 0.39
SS18-219ENST00000581570 SBF1O95248 1867 aa17.48■□□□□ 0.39
SS18-219ENST00000581570 CYP19A1P11511 503 aaPredicted RBP17.47■□□□□ 0.39
SS18-219ENST00000581570 C2CD5Q86YS7 1000 aa17.47■□□□□ 0.39
SS18-219ENST00000581570 H0YIN7 160 aa17.46■□□□□ 0.39
SS18-219ENST00000581570 DPY19L2Q6NUT2 758 aa17.46■□□□□ 0.39
SS18-219ENST00000581570 POTECB2RU33 542 aa17.45■□□□□ 0.38
SS18-219ENST00000581570 NFKBIEO00221 500 aa17.45■□□□□ 0.38
SS18-219ENST00000581570 AKAP4Q5JQC9 854 aa17.45■□□□□ 0.38
SS18-219ENST00000581570 SLC52A2Q9HAB3 445 aa17.45■□□□□ 0.38
SS18-219ENST00000581570 BCL2L12Q9HB09 334 aa17.45■□□□□ 0.38
SS18-219ENST00000581570 TJP1Q07157 1748 aa17.44■□□□□ 0.38
SS18-219ENST00000581570 SLC39A6Q13433 755 aa17.44■□□□□ 0.38
SS18-219ENST00000581570 PANK3Q9H999 370 aa17.44■□□□□ 0.38
SS18-219ENST00000581570 LGR6Q9HBX8 967 aa17.44■□□□□ 0.38
SS18-219ENST00000581570 ZBTB1Q9Y2K1 713 aa17.44■□□□□ 0.38
SS18-219ENST00000581570 PCNTO95613 3336 aa17.44■□□□□ 0.38
SS18-219ENST00000581570 COL15A1P39059 1388 aa17.43■□□□□ 0.38
SS18-219ENST00000581570 MORC1Q86VD1 984 aa17.43■□□□□ 0.38
SS18-219ENST00000581570 ADAMTS7Q9UKP4 1686 aa17.42■□□□□ 0.38
SS18-219ENST00000581570 RNMTO43148 476 aaKnown RBP17.41■□□□□ 0.38
SS18-219ENST00000581570 IL13P35225 146 aa17.41■□□□□ 0.38
SS18-219ENST00000581570 ERFEQ4G0M1 354 aa17.41■□□□□ 0.38
SS18-219ENST00000581570 BICDL1Q6ZP65 573 aa17.41■□□□□ 0.38
SS18-219ENST00000581570 ZNF622Q969S3 477 aaKnown RBP eCLIP17.41■□□□□ 0.38
SS18-219ENST00000581570 CREBZFQ9NS37 354 aa17.41■□□□□ 0.38
SS18-219ENST00000581570 MKRN1Q9UHC7 482 aaKnown RBP17.41■□□□□ 0.38
SS18-219ENST00000581570 C21orf2O43822 256 aa17.4■□□□□ 0.38
SS18-219ENST00000581570 CANXP27824 592 aaKnown RBP17.4■□□□□ 0.38
SS18-219ENST00000581570 CHADLQ6NUI6 762 aa17.4■□□□□ 0.38
SS18-219ENST00000581570 ZNF219Q9P2Y4 722 aaPredicted RBP17.4■□□□□ 0.38
SS18-219ENST00000581570 CARMIL3Q8ND23 1372 aa17.4■□□□□ 0.38
SS18-219ENST00000581570 VSIG10Q8N0Z9 540 aa17.39■□□□□ 0.37
SS18-219ENST00000581570 PDZRN3Q9UPQ7 1066 aa17.39■□□□□ 0.37
SS18-219ENST00000581570 NRXN2Q9P2S2 1712 aa17.38■□□□□ 0.37
SS18-219ENST00000581570 A0A087WZG4 1122 aa17.37■□□□□ 0.37
SS18-219ENST00000581570 PDE6BP35913 854 aa17.37■□□□□ 0.37
SS18-219ENST00000581570 BRIP1Q9BX63 1249 aa17.37■□□□□ 0.37
SS18-219ENST00000581570 AFDNP55196 1824 aaKnown RBP17.37■□□□□ 0.37
SS18-219ENST00000581570 STARD3NLO95772 234 aa17.36■□□□□ 0.37
SS18-219ENST00000581570 EIF5P55010 431 aaKnown RBP17.36■□□□□ 0.37
SS18-219ENST00000581570 TBC1D9BQ66K14 1250 aa17.36■□□□□ 0.37
SS18-219ENST00000581570 TIMELESSQ9UNS1 1208 aa17.36■□□□□ 0.37
SS18-219ENST00000581570 FOXN1O15353 648 aa17.35■□□□□ 0.37
SS18-219ENST00000581570 DDNO94850 711 aaPredicted RBP17.35■□□□□ 0.37
SS18-219ENST00000581570 POTEIP0CG38 1075 aa17.35■□□□□ 0.37
SS18-219ENST00000581570 POTEJP0CG39 1038 aa17.35■□□□□ 0.37
SS18-219ENST00000581570 CCDC24Q8N4L8 307 aa17.35■□□□□ 0.37
SS18-219ENST00000581570 TIAM2Q8IVF5 1701 aa17.35■□□□□ 0.37
SS18-219ENST00000581570 SCN11AQ9UI33 1791 aa17.35■□□□□ 0.37
SS18-219ENST00000581570 PRR5LQ6MZQ0 368 aa17.34■□□□□ 0.37
SS18-219ENST00000581570 TAOK3Q9H2K8 898 aa17.34■□□□□ 0.37
SS18-219ENST00000581570 PRDM10Q9NQV6 1147 aa17.34■□□□□ 0.37
SS18-219ENST00000581570 LTBP3Q9NS15 1303 aa17.34■□□□□ 0.37
SS18-219ENST00000581570 DLEC1Q9Y238 1755 aa17.33■□□□□ 0.37
SS18-219ENST00000581570 MRC1P22897 1456 aa17.33■□□□□ 0.37
SS18-219ENST00000581570 CNTNAP1P78357 1384 aa17.33■□□□□ 0.36
SS18-219ENST00000581570 HMOX1P09601 288 aa17.33■□□□□ 0.36
SS18-219ENST00000581570 KCNA4P22459 653 aa17.33■□□□□ 0.36
SS18-219ENST00000581570 MTHFSDQ2M296 383 aaKnown RBP17.33■□□□□ 0.36
SS18-219ENST00000581570 TTC5Q8N0Z6 440 aa17.33■□□□□ 0.36
SS18-219ENST00000581570 CNKSR1Q969H4 720 aa17.32■□□□□ 0.36
SS18-219ENST00000581570 TBC1D2BQ9UPU7 963 aa17.32■□□□□ 0.36
SS18-219ENST00000581570 KNSTRNQ9Y448 316 aa17.32■□□□□ 0.36
SS18-219ENST00000581570 IQCA1LA6NCM1 817 aa17.31■□□□□ 0.36
SS18-219ENST00000581570 NPHP1O15259 732 aa17.31■□□□□ 0.36
SS18-219ENST00000581570 CTCFP49711 727 aaPredicted RBP17.31■□□□□ 0.36
SS18-219ENST00000581570 EIF4G2P78344 907 aaKnown RBP eCLIP17.31■□□□□ 0.36
SS18-219ENST00000581570 LDHDQ86WU2 507 aa17.31■□□□□ 0.36
SS18-219ENST00000581570 AIDAQ96BJ3 306 aa17.31■□□□□ 0.36
SS18-219ENST00000581570 ZNF330Q9Y3S2 320 aaPredicted RBP17.31■□□□□ 0.36
SS18-219ENST00000581570 CCDC88AQ3V6T2 1871 aa17.31■□□□□ 0.36
SS18-219ENST00000581570 PASKQ96RG2 1323 aa17.3■□□□□ 0.36
SS18-219ENST00000581570 SOGA3Q5TF21 947 aa17.3■□□□□ 0.36
SS18-219ENST00000581570 STYK1Q6J9G0 422 aa17.3■□□□□ 0.36
SS18-219ENST00000581570 TEX13AQ9BXU3 409 aaPredicted RBP17.3■□□□□ 0.36
SS18-219ENST00000581570 HSPA5P11021 654 aaKnown RBP17.29■□□□□ 0.36
SS18-219ENST00000581570 VEGFBP49765 207 aa17.29■□□□□ 0.36
SS18-219ENST00000581570 PRPF40BQ6NWY9 871 aaKnown RBP17.29■□□□□ 0.36
SS18-219ENST00000581570 CNBD1Q8NA66 436 aa17.29■□□□□ 0.36
SS18-219ENST00000581570 ZNF496Q96IT1 587 aaPredicted RBP17.29■□□□□ 0.36
SS18-219ENST00000581570 SETDB2Q96T68 719 aa17.29■□□□□ 0.36
SS18-219ENST00000581570 TAF1DQ9H5J8 278 aaPredicted RBP17.29■□□□□ 0.36
SS18-219ENST00000581570 TMEM88BA6NKF7 163 aa17.28■□□□□ 0.36
SS18-219ENST00000581570 SRGNP10124 158 aa17.28■□□□□ 0.36
SS18-219ENST00000581570 IL6STP40189 918 aaPredicted RBP17.28■□□□□ 0.36
SS18-219ENST00000581570 ST5P78524 1137 aa17.28■□□□□ 0.36
SS18-219ENST00000581570 NPM2Q86SE8 214 aaKnown RBP17.28■□□□□ 0.36
SS18-219ENST00000581570 MASTLQ96GX5 879 aa17.28■□□□□ 0.36
SS18-219ENST00000581570 L3MBTL3Q96JM7 780 aaPredicted RBP17.27■□□□□ 0.36
SS18-219ENST00000581570 HEG1Q9ULI3 1381 aa17.27■□□□□ 0.35
SS18-219ENST00000581570 CAMTA2O94983 1202 aa17.26■□□□□ 0.35
SS18-219ENST00000581570 ITGBL1O95965 494 aaPredicted RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 325.9 ms