RNA–Protein interactions for RNA: ENST00000578415.1

TSEN54-205, Transcript of tRNA splicing endonuclease subunit 54, humanhuman

TSL 3

Gene TSEN54, Length 994 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSEN54-205ENST00000578415 NFIXQ14938 502 aa28.5■■■□□ 2.15
TSEN54-205ENST00000578415 CCER1Q8TC90 406 aaPredicted RBP28.5■■■□□ 2.15
TSEN54-205ENST00000578415 RNF181Q9P0P0 153 aa28.5■■■□□ 2.15
TSEN54-205ENST00000578415 NARFQ9UHQ1 456 aa28.5■■■□□ 2.15
TSEN54-205ENST00000578415 COL15A1P39059 1388 aa28.5■■■□□ 2.15
TSEN54-205ENST00000578415 RBM46Q8TBY0 533 aaKnown RBP28.49■■■□□ 2.15
TSEN54-205ENST00000578415 PER1O15534 1290 aaPredicted RBP28.48■■■□□ 2.15
TSEN54-205ENST00000578415 BCL2L12Q9HB09 334 aa28.48■■■□□ 2.15
TSEN54-205ENST00000578415 DIAPH1O60610 1272 aaKnown RBP28.46■■■□□ 2.15
TSEN54-205ENST00000578415 VSIG10Q8N0Z9 540 aa28.46■■■□□ 2.15
TSEN54-205ENST00000578415 KDM2BQ8NHM5 1336 aa28.44■■■□□ 2.14
TSEN54-205ENST00000578415 NRXN2Q9P2S2 1712 aa28.43■■■□□ 2.14
TSEN54-205ENST00000578415 CC2D1BQ5T0F9 858 aaKnown RBP28.43■■■□□ 2.14
TSEN54-205ENST00000578415 C16orf71Q8IYS4 520 aaPredicted RBP28.43■■■□□ 2.14
TSEN54-205ENST00000578415 SERPINB2P05120 415 aa28.42■■■□□ 2.14
TSEN54-205ENST00000578415 RASSF7Q02833 373 aa28.42■■■□□ 2.14
TSEN54-205ENST00000578415 AFDNP55196 1824 aaKnown RBP28.41■■■□□ 2.14
TSEN54-205ENST00000578415 RRAGCQ9HB90 399 aa28.41■■■□□ 2.14
TSEN54-205ENST00000578415 UBR2Q8IWV8 1755 aa28.4■■■□□ 2.14
TSEN54-205ENST00000578415 CANXP27824 592 aaKnown RBP28.4■■■□□ 2.14
TSEN54-205ENST00000578415 FSTL1Q12841 308 aa28.4■■■□□ 2.14
TSEN54-205ENST00000578415 VIRMAQ69YN4 1812 aaKnown RBP28.4■■■□□ 2.14
TSEN54-205ENST00000578415 COL3A1P02461 1466 aaPredicted RBP28.4■■■□□ 2.14
TSEN54-205ENST00000578415 CARMIL3Q8ND23 1372 aa28.39■■■□□ 2.14
TSEN54-205ENST00000578415 PRELPP51888 382 aa28.39■■■□□ 2.14
TSEN54-205ENST00000578415 HTRA3P83110 453 aa28.39■■■□□ 2.14
TSEN54-205ENST00000578415 SBF1O95248 1867 aa28.38■■■□□ 2.13
TSEN54-205ENST00000578415 WDR90Q96KV7 1748 aa28.38■■■□□ 2.13
TSEN54-205ENST00000578415 EIF5P55010 431 aaKnown RBP28.38■■■□□ 2.13
TSEN54-205ENST00000578415 TTC5Q8N0Z6 440 aa28.37■■■□□ 2.13
TSEN54-205ENST00000578415 STARD3NLO95772 234 aa28.36■■■□□ 2.13
TSEN54-205ENST00000578415 TTLL6Q8N841 843 aa28.36■■■□□ 2.13
TSEN54-205ENST00000578415 IL17REQ8NFR9 667 aa28.36■■■□□ 2.13
TSEN54-205ENST00000578415 ZNF496Q96IT1 587 aaPredicted RBP28.36■■■□□ 2.13
TSEN54-205ENST00000578415 ZC3H4Q9UPT8 1303 aaKnown RBP28.36■■■□□ 2.13
TSEN54-205ENST00000578415 LMNB1P20700 586 aa28.35■■■□□ 2.13
TSEN54-205ENST00000578415 BICDL1Q6ZP65 573 aa28.35■■■□□ 2.13
TSEN54-205ENST00000578415 C2CD5Q86YS7 1000 aa28.35■■■□□ 2.13
TSEN54-205ENST00000578415 TNRC6CQ9HCJ0 1690 aaKnown RBP28.35■■■□□ 2.13
TSEN54-205ENST00000578415 DLEC1Q9Y238 1755 aa28.34■■■□□ 2.13
TSEN54-205ENST00000578415 ZNF790Q6PG37 636 aa28.33■■■□□ 2.13
TSEN54-205ENST00000578415 KLRG1Q96E93 195 aa28.33■■■□□ 2.13
TSEN54-205ENST00000578415 NPC1L1Q9UHC9 1359 aa28.33■■■□□ 2.13
TSEN54-205ENST00000578415 HEG1Q9ULI3 1381 aa28.33■■■□□ 2.13
TSEN54-205ENST00000578415 A0A087WZG4 1122 aa28.32■■■□□ 2.12
TSEN54-205ENST00000578415 U2SURPO15042 1029 aaKnown RBP28.32■■■□□ 2.12
TSEN54-205ENST00000578415 TBC1D9BQ66K14 1250 aa28.32■■■□□ 2.12
TSEN54-205ENST00000578415 GNAT3A8MTJ3 354 aa28.31■■■□□ 2.12
TSEN54-205ENST00000578415 H0YIN7 160 aa28.31■■■□□ 2.12
TSEN54-205ENST00000578415 NFKBIEO00221 500 aa28.31■■■□□ 2.12
TSEN54-205ENST00000578415 TEFQ10587 303 aa28.31■■■□□ 2.12
TSEN54-205ENST00000578415 GAS2L2Q8NHY3 880 aa28.31■■■□□ 2.12
TSEN54-205ENST00000578415 GLTPD2A6NH11 291 aa28.29■■■□□ 2.12
TSEN54-205ENST00000578415 SMC1BQ8NDV3 1235 aa28.29■■■□□ 2.12
TSEN54-205ENST00000578415 CNGB1Q14028 1251 aaPredicted RBP28.28■■■□□ 2.12
TSEN54-205ENST00000578415 JMYQ8N9B5 988 aa28.28■■■□□ 2.12
TSEN54-205ENST00000578415 TEX13AQ9BXU3 409 aaPredicted RBP28.28■■■□□ 2.12
TSEN54-205ENST00000578415 TBC1D2BQ9UPU7 963 aa28.28■■■□□ 2.12
TSEN54-205ENST00000578415 SCN7AQ01118 1682 aa28.27■■■□□ 2.12
TSEN54-205ENST00000578415 CEMIPQ8WUJ3 1361 aa28.26■■■□□ 2.12
TSEN54-205ENST00000578415 IL6STP40189 918 aaPredicted RBP28.26■■■□□ 2.11
TSEN54-205ENST00000578415 PRR5LQ6MZQ0 368 aa28.26■■■□□ 2.11
TSEN54-205ENST00000578415 CCDC24Q8N4L8 307 aa28.26■■■□□ 2.11
TSEN54-205ENST00000578415 ZNF330Q9Y3S2 320 aaPredicted RBP28.26■■■□□ 2.11
TSEN54-205ENST00000578415 SIPA1L3O60292 1781 aaPredicted RBP28.26■■■□□ 2.11
TSEN54-205ENST00000578415 VEGFAP15692 232 aaPredicted RBP28.25■■■□□ 2.11
TSEN54-205ENST00000578415 BRIP1Q9BX63 1249 aa28.25■■■□□ 2.11
TSEN54-205ENST00000578415 ANKRD31Q8N7Z5 1873 aa28.25■■■□□ 2.11
TSEN54-205ENST00000578415 A1BGP04217 495 aa28.24■■■□□ 2.11
TSEN54-205ENST00000578415 ZNF622Q969S3 477 aaKnown RBP eCLIP28.24■■■□□ 2.11
TSEN54-205ENST00000578415 PHACTR3Q96KR7 559 aa28.24■■■□□ 2.11
TSEN54-205ENST00000578415 FMNL2Q96PY5 1086 aa28.24■■■□□ 2.11
TSEN54-205ENST00000578415 KCNQ3O43525 872 aa28.23■■■□□ 2.11
TSEN54-205ENST00000578415 PDE6BP35913 854 aa28.23■■■□□ 2.11
TSEN54-205ENST00000578415 TIAM2Q8IVF5 1701 aa28.23■■■□□ 2.11
TSEN54-205ENST00000578415 CAMTA2O94983 1202 aa28.22■■■□□ 2.11
TSEN54-205ENST00000578415 PDZRN3Q9UPQ7 1066 aa28.22■■■□□ 2.11
TSEN54-205ENST00000578415 C21orf2O43822 256 aa28.21■■■□□ 2.11
TSEN54-205ENST00000578415 COL11A2P13942 1736 aaPredicted RBP28.21■■■□□ 2.11
TSEN54-205ENST00000578415 POTECB2RU33 542 aa28.2■■■□□ 2.1
TSEN54-205ENST00000578415 PRKAR2BP31323 418 aa28.2■■■□□ 2.1
TSEN54-205ENST00000578415 RSPH6AQ9H0K4 717 aa28.2■■■□□ 2.1
TSEN54-205ENST00000578415 ZNF219Q9P2Y4 722 aaPredicted RBP28.2■■■□□ 2.1
TSEN54-205ENST00000578415 BTBD11A6QL63 1104 aa28.19■■■□□ 2.1
TSEN54-205ENST00000578415 CNBD1Q8NA66 436 aa28.18■■■□□ 2.1
TSEN54-205ENST00000578415 SETDB2Q96T68 719 aa28.18■■■□□ 2.1
TSEN54-205ENST00000578415 USP16Q9Y5T5 823 aa28.16■■■□□ 2.1
TSEN54-205ENST00000578415 CCDC88AQ3V6T2 1871 aa28.15■■■□□ 2.1
TSEN54-205ENST00000578415 PIP4K2AP48426 406 aaPredicted RBP28.15■■■□□ 2.1
TSEN54-205ENST00000578415 ERFEQ4G0M1 354 aa28.15■■■□□ 2.1
TSEN54-205ENST00000578415 COL13A1Q5TAT6 717 aaPredicted RBP28.15■■■□□ 2.1
TSEN54-205ENST00000578415 DPY19L2Q6NUT2 758 aa28.15■■■□□ 2.1
TSEN54-205ENST00000578415 DZIP3Q86Y13 1208 aaKnown RBP28.15■■■□□ 2.1
TSEN54-205ENST00000578415 LTBP3Q9NS15 1303 aa28.15■■■□□ 2.1
TSEN54-205ENST00000578415 PRAMEF22A3QJZ6 481 aa28.14■■■□□ 2.1
TSEN54-205ENST00000578415 NPM2Q86SE8 214 aaKnown RBP28.14■■■□□ 2.1
TSEN54-205ENST00000578415 FER1L6Q2WGJ9 1857 aa28.13■■■□□ 2.09
TSEN54-205ENST00000578415 SRGNP10124 158 aa28.13■■■□□ 2.09
TSEN54-205ENST00000578415 STYK1Q6J9G0 422 aa28.13■■■□□ 2.09
TSEN54-205ENST00000578415 CFAP53Q96M91 514 aa28.13■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms