RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 ZPR1O75312 459 aa13.42□□□□□ -0.26
SS18-207ENST00000577636 RASSF7Q02833 373 aa13.42□□□□□ -0.26
SS18-207ENST00000577636 USPL1Q5W0Q7 1092 aa13.42□□□□□ -0.26
SS18-207ENST00000577636 AEBP1Q8IUX7 1158 aa13.42□□□□□ -0.26
SS18-207ENST00000577636 PLEKHG2Q9H7P9 1386 aa13.42□□□□□ -0.26
SS18-207ENST00000577636 USP42Q9H9J4 1324 aaKnown RBP13.41□□□□□ -0.26
SS18-207ENST00000577636 SULT6B1Q6IMI4 303 aa13.41□□□□□ -0.26
SS18-207ENST00000577636 C4AP0C0L4 1744 aa13.41□□□□□ -0.26
SS18-207ENST00000577636 ZBED9Q6R2W3 1325 aa13.4□□□□□ -0.26
SS18-207ENST00000577636 KDM6AO15550 1401 aaPredicted RBP13.4□□□□□ -0.26
SS18-207ENST00000577636 KIAA1551Q9HCM1 1747 aa13.4□□□□□ -0.26
SS18-207ENST00000577636 POLRMTO00411 1230 aaKnown RBP13.4□□□□□ -0.26
SS18-207ENST00000577636 INTS5Q6P9B9 1019 aaKnown RBP13.4□□□□□ -0.26
SS18-207ENST00000577636 DNAJC10Q8IXB1 793 aa13.4□□□□□ -0.26
SS18-207ENST00000577636 TNS4Q8IZW8 715 aa13.4□□□□□ -0.26
SS18-207ENST00000577636 JMYQ8N9B5 988 aa13.4□□□□□ -0.26
SS18-207ENST00000577636 SMC1BQ8NDV3 1235 aa13.4□□□□□ -0.26
SS18-207ENST00000577636 CFAP53Q96M91 514 aa13.4□□□□□ -0.26
SS18-207ENST00000577636 KIF13BQ9NQT8 1826 aa13.4□□□□□ -0.26
SS18-207ENST00000577636 TM4SF1P30408 202 aa13.39□□□□□ -0.27
SS18-207ENST00000577636 SLC39A6Q13433 755 aa13.38□□□□□ -0.27
SS18-207ENST00000577636 NFIXQ14938 502 aa13.37□□□□□ -0.27
SS18-207ENST00000577636 LGR6Q9HBX8 967 aa13.37□□□□□ -0.27
SS18-207ENST00000577636 ZNF219Q9P2Y4 722 aaPredicted RBP13.37□□□□□ -0.27
SS18-207ENST00000577636 WDR90Q96KV7 1748 aa13.36□□□□□ -0.27
SS18-207ENST00000577636 MYH14Q7Z406 1995 aaKnown RBP13.36□□□□□ -0.27
SS18-207ENST00000577636 SERPINB2P05120 415 aa13.36□□□□□ -0.27
SS18-207ENST00000577636 VEGFAP15692 232 aaPredicted RBP13.36□□□□□ -0.27
SS18-207ENST00000577636 BICDL1Q6ZP65 573 aa13.36□□□□□ -0.27
SS18-207ENST00000577636 C2CD5Q86YS7 1000 aa13.36□□□□□ -0.27
SS18-207ENST00000577636 GTF3C3Q9Y5Q9 886 aa13.36□□□□□ -0.27
SS18-207ENST00000577636 GLTPD2A6NH11 291 aa13.35□□□□□ -0.27
SS18-207ENST00000577636 HSPA1AP0DMV8 641 aaKnown RBP13.35□□□□□ -0.27
SS18-207ENST00000577636 HSPA1BP0DMV9 641 aaKnown RBP13.35□□□□□ -0.27
SS18-207ENST00000577636 LMNB1P20700 586 aa13.35□□□□□ -0.27
SS18-207ENST00000577636 CANXP27824 592 aaKnown RBP13.35□□□□□ -0.27
SS18-207ENST00000577636 TTLL6Q8N841 843 aa13.35□□□□□ -0.27
SS18-207ENST00000577636 ANKRD26Q9UPS8 1709 aa13.34□□□□□ -0.27
SS18-207ENST00000577636 H0YIN7 160 aa13.34□□□□□ -0.27
SS18-207ENST00000577636 CYP19A1P11511 503 aaPredicted RBP13.34□□□□□ -0.27
SS18-207ENST00000577636 PRELPP51888 382 aa13.34□□□□□ -0.27
SS18-207ENST00000577636 AKAP4Q5JQC9 854 aa13.34□□□□□ -0.27
SS18-207ENST00000577636 ZNF622Q969S3 477 aaKnown RBP eCLIP13.34□□□□□ -0.272e-8■□□□□ 10.1
SS18-207ENST00000577636 SLC52A2Q9HAB3 445 aa13.34□□□□□ -0.27
SS18-207ENST00000577636 NARFQ9UHQ1 456 aa13.34□□□□□ -0.27
SS18-207ENST00000577636 ZBTB1Q9Y2K1 713 aa13.34□□□□□ -0.27
SS18-207ENST00000577636 SOS1Q07889 1333 aaPredicted RBP13.34□□□□□ -0.27
SS18-207ENST00000577636 COL5A3P25940 1745 aaPredicted RBP13.33□□□□□ -0.27
SS18-207ENST00000577636 NEFLP07196 543 aa13.33□□□□□ -0.28
SS18-207ENST00000577636 ARFGEF1Q9Y6D6 1849 aa13.32□□□□□ -0.28
SS18-207ENST00000577636 BRCA1P38398 1863 aaKnown RBP13.32□□□□□ -0.28
SS18-207ENST00000577636 RNMTO43148 476 aaKnown RBP13.32□□□□□ -0.28
SS18-207ENST00000577636 HMOX1P09601 288 aa13.32□□□□□ -0.28
SS18-207ENST00000577636 IL13P35225 146 aa13.32□□□□□ -0.28
SS18-207ENST00000577636 DPY19L2Q6NUT2 758 aa13.32□□□□□ -0.28
SS18-207ENST00000577636 CCDC24Q8N4L8 307 aa13.32□□□□□ -0.28
SS18-207ENST00000577636 BCL2L12Q9HB09 334 aa13.32□□□□□ -0.28
SS18-207ENST00000577636 ZNF330Q9Y3S2 320 aaPredicted RBP13.32□□□□□ -0.28
SS18-207ENST00000577636 ZNF831Q5JPB2 1677 aa13.31□□□□□ -0.28
SS18-207ENST00000577636 NUDCQ9Y266 331 aa13.31□□□□□ -0.28
SS18-207ENST00000577636 COL15A1P39059 1388 aa13.31□□□□□ -0.28
SS18-207ENST00000577636 NFKBIEO00221 500 aa13.3□□□□□ -0.28
SS18-207ENST00000577636 C21orf2O43822 256 aa13.3□□□□□ -0.28
SS18-207ENST00000577636 ADAMTS8Q9UP79 889 aa13.3□□□□□ -0.28
SS18-207ENST00000577636 ZC3H4Q9UPT8 1303 aaKnown RBP13.3□□□□□ -0.28
SS18-207ENST00000577636 POTECB2RU33 542 aa13.29□□□□□ -0.28
SS18-207ENST00000577636 NPHP1O15259 732 aa13.29□□□□□ -0.28
SS18-207ENST00000577636 ERFEQ4G0M1 354 aa13.29□□□□□ -0.28
SS18-207ENST00000577636 MKRN1Q9UHC7 482 aaKnown RBP13.29□□□□□ -0.28
SS18-207ENST00000577636 SBF1O95248 1867 aa13.28□□□□□ -0.28
SS18-207ENST00000577636 MTHFSDQ2M296 383 aaKnown RBP13.28□□□□□ -0.28
SS18-207ENST00000577636 TBC1D9BQ66K14 1250 aa13.28□□□□□ -0.28
SS18-207ENST00000577636 TTC5Q8N0Z6 440 aa13.28□□□□□ -0.28
SS18-207ENST00000577636 NGEFQ8N5V2 710 aa13.28□□□□□ -0.28
SS18-207ENST00000577636 STARD3NLO95772 234 aa13.27□□□□□ -0.29
SS18-207ENST00000577636 TBC1D2BQ9UPU7 963 aa13.27□□□□□ -0.29
SS18-207ENST00000577636 CARMIL3Q8ND23 1372 aa13.27□□□□□ -0.29
SS18-207ENST00000577636 TJP1Q07157 1748 aa13.27□□□□□ -0.29
SS18-207ENST00000577636 A0A087WZG4 1122 aa13.26□□□□□ -0.29
SS18-207ENST00000577636 DDNO94850 711 aaPredicted RBP13.26□□□□□ -0.29
SS18-207ENST00000577636 PDE6BP35913 854 aa13.26□□□□□ -0.29
SS18-207ENST00000577636 NPM2Q86SE8 214 aaKnown RBP13.26□□□□□ -0.29
SS18-207ENST00000577636 VSIG10Q8N0Z9 540 aa13.26□□□□□ -0.29
SS18-207ENST00000577636 PNNQ9H307 717 aaKnown RBP13.26□□□□□ -0.29
SS18-207ENST00000577636 TNRC6CQ9HCJ0 1690 aaKnown RBP13.26□□□□□ -0.29
SS18-207ENST00000577636 POTEIP0CG38 1075 aa13.25□□□□□ -0.29
SS18-207ENST00000577636 POTEJP0CG39 1038 aa13.25□□□□□ -0.29
SS18-207ENST00000577636 EIF5P55010 431 aaKnown RBP13.24□□□□□ -0.29
SS18-207ENST00000577636 CHADLQ6NUI6 762 aa13.24□□□□□ -0.29
SS18-207ENST00000577636 BRIP1Q9BX63 1249 aa13.24□□□□□ -0.29
SS18-207ENST00000577636 AFDNP55196 1824 aaKnown RBP13.23□□□□□ -0.29
SS18-207ENST00000577636 DIAPH1O60610 1272 aaKnown RBP13.23□□□□□ -0.29
SS18-207ENST00000577636 A1BGP04217 495 aa13.23□□□□□ -0.29
SS18-207ENST00000577636 TEFQ10587 303 aa13.23□□□□□ -0.29
SS18-207ENST00000577636 PRR5LQ6MZQ0 368 aa13.23□□□□□ -0.29
SS18-207ENST00000577636 SETDB2Q96T68 719 aa13.23□□□□□ -0.29
SS18-207ENST00000577636 TAOK3Q9H2K8 898 aa13.23□□□□□ -0.29
SS18-207ENST00000577636 CREBZFQ9NS37 354 aa13.23□□□□□ -0.29
SS18-207ENST00000577636 SALL2Q9Y467 1007 aaPredicted RBP13.23□□□□□ -0.29
SS18-207ENST00000577636 PCNTO95613 3336 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms