RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 C2CD5Q86YS7 1000 aa12.27□□□□□ -0.45
SMG6-218ENST00000575454 STARD3NLO95772 234 aa12.26□□□□□ -0.45
SMG6-218ENST00000575454 HSPA1AP0DMV8 641 aaKnown RBP12.26□□□□□ -0.45
SMG6-218ENST00000575454 HSPA1BP0DMV9 641 aaKnown RBP12.26□□□□□ -0.45
SMG6-218ENST00000575454 IL13P35225 146 aa12.26□□□□□ -0.45
SMG6-218ENST00000575454 ZNF831Q5JPB2 1677 aa12.26□□□□□ -0.45
SMG6-218ENST00000575454 ITGB4P16144 1822 aa12.25□□□□□ -0.45
SMG6-218ENST00000575454 PDE6BP35913 854 aa12.25□□□□□ -0.45
SMG6-218ENST00000575454 KNSTRNQ9Y448 316 aa12.25□□□□□ -0.45
SMG6-218ENST00000575454 KIF13BQ9NQT8 1826 aa12.25□□□□□ -0.45
SMG6-218ENST00000575454 NFKBIEO00221 500 aa12.24□□□□□ -0.45
SMG6-218ENST00000575454 COL15A1P39059 1388 aa12.24□□□□□ -0.45
SMG6-218ENST00000575454 EIF4G2P78344 907 aaKnown RBP eCLIP12.24□□□□□ -0.45
SMG6-218ENST00000575454 KIF20BQ96Q89 1820 aa12.24□□□□□ -0.45
SMG6-218ENST00000575454 BRIP1Q9BX63 1249 aa12.24□□□□□ -0.45
SMG6-218ENST00000575454 CREBZFQ9NS37 354 aa12.24□□□□□ -0.45
SMG6-218ENST00000575454 ZBTB1Q9Y2K1 713 aa12.24□□□□□ -0.45
SMG6-218ENST00000575454 RNMTO43148 476 aaKnown RBP12.23□□□□□ -0.45
SMG6-218ENST00000575454 ERFEQ4G0M1 354 aa12.23□□□□□ -0.45
SMG6-218ENST00000575454 TTC5Q8N0Z6 440 aa12.23□□□□□ -0.45
SMG6-218ENST00000575454 ZNF622Q969S3 477 aaKnown RBP eCLIP12.23□□□□□ -0.454e-6■■■■□ 24.2
SMG6-218ENST00000575454 TEX13AQ9BXU3 409 aaPredicted RBP12.23□□□□□ -0.45
SMG6-218ENST00000575454 BCL2L12Q9HB09 334 aa12.23□□□□□ -0.45
SMG6-218ENST00000575454 LGR6Q9HBX8 967 aa12.23□□□□□ -0.45
SMG6-218ENST00000575454 KIAA1551Q9HCM1 1747 aa12.23□□□□□ -0.45
SMG6-218ENST00000575454 POTECB2RU33 542 aa12.22□□□□□ -0.45
SMG6-218ENST00000575454 CANXP27824 592 aaKnown RBP12.22□□□□□ -0.45
SMG6-218ENST00000575454 SLC39A6Q13433 755 aa12.22□□□□□ -0.45
SMG6-218ENST00000575454 SOGA3Q5TF21 947 aa12.22□□□□□ -0.45
SMG6-218ENST00000575454 CHADLQ6NUI6 762 aa12.22□□□□□ -0.45
SMG6-218ENST00000575454 NPM2Q86SE8 214 aaKnown RBP12.22□□□□□ -0.45
SMG6-218ENST00000575454 ANKRD26Q9UPS8 1709 aa12.22□□□□□ -0.45
SMG6-218ENST00000575454 SLC34A2O95436 690 aa12.21□□□□□ -0.45
SMG6-218ENST00000575454 EIF5P55010 431 aaKnown RBP12.21□□□□□ -0.45
SMG6-218ENST00000575454 BICDL1Q6ZP65 573 aa12.21□□□□□ -0.45
SMG6-218ENST00000575454 CNKSR1Q969H4 720 aa12.21□□□□□ -0.45
SMG6-218ENST00000575454 CLSPNQ9HAW4 1339 aa12.2□□□□□ -0.46
SMG6-218ENST00000575454 LTBP3Q9NS15 1303 aa12.2□□□□□ -0.46
SMG6-218ENST00000575454 IQCA1LA6NCM1 817 aa12.2□□□□□ -0.46
SMG6-218ENST00000575454 C21orf2O43822 256 aa12.2□□□□□ -0.46
SMG6-218ENST00000575454 TAOK3Q9H2K8 898 aa12.2□□□□□ -0.46
SMG6-218ENST00000575454 N4BP2Q86UW6 1770 aaPredicted RBP12.2□□□□□ -0.46
SMG6-218ENST00000575454 NPHP1O15259 732 aa12.19□□□□□ -0.46
SMG6-218ENST00000575454 TRIM26Q12899 539 aaPredicted RBP12.19□□□□□ -0.46
SMG6-218ENST00000575454 MTHFSDQ2M296 383 aaKnown RBP12.19□□□□□ -0.46
SMG6-218ENST00000575454 SETDB2Q96T68 719 aa12.19□□□□□ -0.46
SMG6-218ENST00000575454 CARMIL3Q8ND23 1372 aa12.18□□□□□ -0.46
SMG6-218ENST00000575454 HSPA5P11021 654 aaKnown RBP12.18□□□□□ -0.46
SMG6-218ENST00000575454 IL6STP40189 918 aaPredicted RBP12.18□□□□□ -0.46
SMG6-218ENST00000575454 ST5P78524 1137 aa12.18□□□□□ -0.46
SMG6-218ENST00000575454 TBC1D9BQ66K14 1250 aa12.18□□□□□ -0.46
SMG6-218ENST00000575454 STYK1Q6J9G0 422 aa12.18□□□□□ -0.46
SMG6-218ENST00000575454 PRR5LQ6MZQ0 368 aa12.18□□□□□ -0.46
SMG6-218ENST00000575454 CNBD1Q8NA66 436 aa12.18□□□□□ -0.46
SMG6-218ENST00000575454 AIDAQ96BJ3 306 aa12.18□□□□□ -0.46
SMG6-218ENST00000575454 PRDM10Q9NQV6 1147 aa12.18□□□□□ -0.46
SMG6-218ENST00000575454 DIAPH1O60610 1272 aaKnown RBP12.17□□□□□ -0.46
SMG6-218ENST00000575454 HMOX1P09601 288 aa12.17□□□□□ -0.46
SMG6-218ENST00000575454 TEFQ10587 303 aa12.17□□□□□ -0.46
SMG6-218ENST00000575454 LDHDQ86WU2 507 aa12.17□□□□□ -0.46
SMG6-218ENST00000575454 ZNF219Q9P2Y4 722 aaPredicted RBP12.17□□□□□ -0.46
SMG6-218ENST00000575454 MKRN1Q9UHC7 482 aaKnown RBP12.17□□□□□ -0.46
SMG6-218ENST00000575454 CTCFP49711 727 aaPredicted RBP12.16□□□□□ -0.46
SMG6-218ENST00000575454 AMER1Q5JTC6 1135 aaPredicted RBP12.16□□□□□ -0.46
SMG6-218ENST00000575454 ZNF790Q6PG37 636 aa12.16□□□□□ -0.46
SMG6-218ENST00000575454 MASTLQ96GX5 879 aa12.16□□□□□ -0.46
SMG6-218ENST00000575454 ZNF330Q9Y3S2 320 aaPredicted RBP12.16□□□□□ -0.46
SMG6-218ENST00000575454 COL5A3P25940 1745 aaPredicted RBP12.16□□□□□ -0.46
SMG6-218ENST00000575454 DDNO94850 711 aaPredicted RBP12.15□□□□□ -0.46
SMG6-218ENST00000575454 SRGNP10124 158 aa12.15□□□□□ -0.46
SMG6-218ENST00000575454 PRPF40BQ6NWY9 871 aaKnown RBP12.15□□□□□ -0.46
SMG6-218ENST00000575454 GAS2L2Q8NHY3 880 aa12.15□□□□□ -0.46
SMG6-218ENST00000575454 ZNF496Q96IT1 587 aaPredicted RBP12.15□□□□□ -0.46
SMG6-218ENST00000575454 L3MBTL3Q96JM7 780 aaPredicted RBP12.15□□□□□ -0.46
SMG6-218ENST00000575454 FMNL2Q96PY5 1086 aa12.15□□□□□ -0.46
SMG6-218ENST00000575454 TBC1D2BQ9UPU7 963 aa12.15□□□□□ -0.46
SMG6-218ENST00000575454 ARFGEF1Q9Y6D6 1849 aa12.15□□□□□ -0.46
SMG6-218ENST00000575454 TNRC6CQ9HCJ0 1690 aaKnown RBP12.15□□□□□ -0.46
SMG6-218ENST00000575454 CNTNAP1P78357 1384 aa12.15□□□□□ -0.46
SMG6-218ENST00000575454 MRC1P22897 1456 aa12.14□□□□□ -0.47
SMG6-218ENST00000575454 TMEM88BA6NKF7 163 aa12.14□□□□□ -0.47
SMG6-218ENST00000575454 GNAT3A8MTJ3 354 aa12.14□□□□□ -0.47
SMG6-218ENST00000575454 CCDC93Q567U6 631 aa12.14□□□□□ -0.47
SMG6-218ENST00000575454 CLEC4GQ6UXB4 293 aa12.14□□□□□ -0.47
SMG6-218ENST00000575454 HEG1Q9ULI3 1381 aa12.14□□□□□ -0.47
SMG6-218ENST00000575454 PASKQ96RG2 1323 aa12.13□□□□□ -0.47
SMG6-218ENST00000575454 FOXN1O15353 648 aa12.13□□□□□ -0.47
SMG6-218ENST00000575454 CAMTA2O94983 1202 aa12.13□□□□□ -0.47
SMG6-218ENST00000575454 PNMA8AQ86V59 439 aaPredicted RBP12.13□□□□□ -0.47
SMG6-218ENST00000575454 TAF1DQ9H5J8 278 aaPredicted RBP12.13□□□□□ -0.47
SMG6-218ENST00000575454 ZNF652Q9Y2D9 606 aa12.13□□□□□ -0.47
SMG6-218ENST00000575454 MYH14Q7Z406 1995 aaKnown RBP12.12□□□□□ -0.47
SMG6-218ENST00000575454 POTEIP0CG38 1075 aa12.12□□□□□ -0.47
SMG6-218ENST00000575454 POTEJP0CG39 1038 aa12.12□□□□□ -0.47
SMG6-218ENST00000575454 NPR1P16066 1061 aa12.12□□□□□ -0.47
SMG6-218ENST00000575454 NBPF5PQ86XG9 351 aaPredicted RBP12.12□□□□□ -0.47
SMG6-218ENST00000575454 RTKN2Q8IZC4 609 aa12.12□□□□□ -0.47
SMG6-218ENST00000575454 CCDC24Q8N4L8 307 aa12.12□□□□□ -0.47
SMG6-218ENST00000575454 IL17REQ8NFR9 667 aa12.12□□□□□ -0.47
SMG6-218ENST00000575454 C7orf43Q8WVR3 580 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms