RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 U2AF2P26368 475 aaKnown RBP eCLIP11.59□□□□□ -0.554e-6■■□□□ 13.2
CCDC40-212ENST00000574799 NUCB1Q02818 461 aa11.59□□□□□ -0.55
CCDC40-212ENST00000574799 EYA1Q99502 592 aa11.59□□□□□ -0.55
CCDC40-212ENST00000574799 TMEM63CQ9P1W3 806 aa11.59□□□□□ -0.55
CCDC40-212ENST00000574799 KIF1AQ12756 1690 aa11.59□□□□□ -0.55
CCDC40-212ENST00000574799 ALDH1L2Q3SY69 923 aa11.58□□□□□ -0.55
CCDC40-212ENST00000574799 TAF3Q5VWG9 929 aa11.58□□□□□ -0.56
CCDC40-212ENST00000574799 ZNF592Q92610 1267 aa11.58□□□□□ -0.56
CCDC40-212ENST00000574799 GDPD2Q9HCC8 539 aa11.58□□□□□ -0.56
CCDC40-212ENST00000574799 ABCC4O15439 1325 aa11.58□□□□□ -0.56
CCDC40-212ENST00000574799 DNAJC5Q9H3Z4 198 aa11.58□□□□□ -0.56
CCDC40-212ENST00000574799 GOLGA6L6A8MZA4 724 aa11.57□□□□□ -0.56
CCDC40-212ENST00000574799 KCNJ4P48050 445 aa11.57□□□□□ -0.56
CCDC40-212ENST00000574799 NEK4P51957 841 aa11.57□□□□□ -0.56
CCDC40-212ENST00000574799 MTHFSDQ2M296 383 aaKnown RBP11.57□□□□□ -0.56
CCDC40-212ENST00000574799 MCM10Q7L590 875 aa11.57□□□□□ -0.56
CCDC40-212ENST00000574799 SIRT2Q8IXJ6 389 aa11.57□□□□□ -0.56
CCDC40-212ENST00000574799 CHL1O00533 1208 aa11.57□□□□□ -0.56
CCDC40-212ENST00000574799 HOXC9P31274 260 aa11.57□□□□□ -0.56
CCDC40-212ENST00000574799 INTS3Q68E01 1043 aaKnown RBP11.57□□□□□ -0.56
CCDC40-212ENST00000574799 ERICH4A6NGS2 130 aa11.57□□□□□ -0.56
CCDC40-212ENST00000574799 IBTKQ9P2D0 1353 aaPredicted RBP11.57□□□□□ -0.56
CCDC40-212ENST00000574799 TNNT3P45378 269 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-212ENST00000574799 PDLIM2Q96JY6 352 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 ADCY5O95622 1261 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 NUTM2GQ5VZR2 741 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 ANKLE2Q86XL3 938 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 GPT2Q8TD30 523 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 GCC1Q96CN9 775 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 BCL2L12Q9HB09 334 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 CACNA1FO60840 1977 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 CCDC66A2RUB6 948 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 ZBTB7BO15156 539 aaPredicted RBP11.56□□□□□ -0.56
CCDC40-212ENST00000574799 PDIA4P13667 645 aaKnown RBP11.56□□□□□ -0.56
CCDC40-212ENST00000574799 ATP2B3Q16720 1220 aa11.56□□□□□ -0.56
CCDC40-212ENST00000574799 REC8O95072 547 aa11.55□□□□□ -0.56
CCDC40-212ENST00000574799 DDIT3P35638 169 aa11.55□□□□□ -0.56
CCDC40-212ENST00000574799 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.55□□□□□ -0.56
CCDC40-212ENST00000574799 MCCP23508 829 aa11.55□□□□□ -0.56
CCDC40-212ENST00000574799 KIF24Q5T7B8 1368 aa11.55□□□□□ -0.56
CCDC40-212ENST00000574799 SOX12O15370 315 aa11.55□□□□□ -0.56
CCDC40-212ENST00000574799 TRERF1Q96PN7 1200 aa11.55□□□□□ -0.56
CCDC40-212ENST00000574799 ATP10DQ9P241 1426 aa11.55□□□□□ -0.56
CCDC40-212ENST00000574799 PXDNQ92626 1479 aa11.55□□□□□ -0.56
CCDC40-212ENST00000574799 PIBF1Q8WXW3 757 aa11.54□□□□□ -0.56
CCDC40-212ENST00000574799 ORAI2Q96SN7 254 aa11.54□□□□□ -0.56
CCDC40-212ENST00000574799 ABCA3Q99758 1704 aa11.54□□□□□ -0.56
CCDC40-212ENST00000574799 GLI3P10071 1580 aa11.54□□□□□ -0.56
CCDC40-212ENST00000574799 GTF2E1P29083 439 aaPredicted RBP11.54□□□□□ -0.56
CCDC40-212ENST00000574799 HCLS1P14317 486 aaPredicted RBP11.53□□□□□ -0.56
CCDC40-212ENST00000574799 CHMP3Q9Y3E7 222 aa11.53□□□□□ -0.56
CCDC40-212ENST00000574799 C1orf167Q5SNV9 1468 aa11.53□□□□□ -0.56
CCDC40-212ENST00000574799 C5P01031 1676 aa11.53□□□□□ -0.56
CCDC40-212ENST00000574799 CHMP4AQ9BY43 222 aa11.53□□□□□ -0.56
CCDC40-212ENST00000574799 GNAI1P63096 354 aa11.52□□□□□ -0.56
CCDC40-212ENST00000574799 FAM184AQ8NB25 1140 aa11.52□□□□□ -0.56
CCDC40-212ENST00000574799 NGDNQ8NEJ9 315 aaKnown RBP11.52□□□□□ -0.56
CCDC40-212ENST00000574799 RTL1A6NKG5 1358 aa11.52□□□□□ -0.56
CCDC40-212ENST00000574799 KIAA0232Q92628 1395 aa11.52□□□□□ -0.56
CCDC40-212ENST00000574799 ZBTB22O15209 634 aa11.52□□□□□ -0.57
CCDC40-212ENST00000574799 TWISTNBQ3B726 338 aaPredicted RBP11.52□□□□□ -0.57
CCDC40-212ENST00000574799 MIS18AQ9NYP9 233 aa11.52□□□□□ -0.57
CCDC40-212ENST00000574799 NSFL1CQ9UNZ2 370 aaKnown RBP11.52□□□□□ -0.57
CCDC40-212ENST00000574799 SCN11AQ9UI33 1791 aa11.52□□□□□ -0.57
CCDC40-212ENST00000574799 SHANK3Q9BYB0 1731 aa11.52□□□□□ -0.57
CCDC40-212ENST00000574799 RIOK3O14730 519 aaKnown RBP11.52□□□□□ -0.57
CCDC40-212ENST00000574799 PHF8Q9UPP1 1060 aa11.52□□□□□ -0.57
CCDC40-212ENST00000574799 ARHGAP45Q92619 1136 aa11.51□□□□□ -0.57
CCDC40-212ENST00000574799 KIF2CQ99661 725 aa11.51□□□□□ -0.57
CCDC40-212ENST00000574799 NLRP6P59044 892 aa11.51□□□□□ -0.57
CCDC40-212ENST00000574799 CEMIPQ8WUJ3 1361 aa11.51□□□□□ -0.57
CCDC40-212ENST00000574799 NPHP1O15259 732 aa11.51□□□□□ -0.57
CCDC40-212ENST00000574799 FIBPO43427 364 aa11.5□□□□□ -0.57
CCDC40-212ENST00000574799 ZNF428Q96B54 188 aa11.5□□□□□ -0.57
CCDC40-212ENST00000574799 C16orf45Q96MC5 204 aaPredicted RBP11.5□□□□□ -0.57
CCDC40-212ENST00000574799 IL17REQ8NFR9 667 aa11.5□□□□□ -0.57
CCDC40-212ENST00000574799 NCOA3Q9Y6Q9 1424 aa11.5□□□□□ -0.57
CCDC40-212ENST00000574799 TRIM6-TRIM34B2RNG4 842 aa11.5□□□□□ -0.57
CCDC40-212ENST00000574799 PKD1L3Q7Z443 1732 aa11.5□□□□□ -0.57
CCDC40-212ENST00000574799 GOLGA6L4A6NEF3 574 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 NBPF6Q5VWK0 638 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 ZNF710Q8N1W2 664 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 ABTB2Q8N961 1025 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 NBPF4Q96M43 638 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 ANO2Q9NQ90 1003 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 AXIN2Q9Y2T1 843 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 LMTK3Q96Q04 1460 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 CCDC112Q8NEF3 446 aa11.49□□□□□ -0.57
CCDC40-212ENST00000574799 USHBP1Q8N6Y0 703 aa11.48□□□□□ -0.57
CCDC40-212ENST00000574799 TPD52L1Q16890 204 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-212ENST00000574799 RILPL2Q969X0 211 aa11.48□□□□□ -0.57
CCDC40-212ENST00000574799 OGFRQ9NZT2 677 aa11.48□□□□□ -0.57
CCDC40-212ENST00000574799 G2E3Q7L622 706 aa11.47□□□□□ -0.57
CCDC40-212ENST00000574799 TIGD1Q96MW7 591 aa11.47□□□□□ -0.57
CCDC40-212ENST00000574799 TMX3Q96JJ7 454 aa11.47□□□□□ -0.57
CCDC40-212ENST00000574799 FEZ1Q99689 392 aa11.47□□□□□ -0.57
CCDC40-212ENST00000574799 ERC2O15083 957 aa11.47□□□□□ -0.57
CCDC40-212ENST00000574799 TPM3P06753 285 aa11.47□□□□□ -0.57
CCDC40-212ENST00000574799 CLEC17AQ6ZS10 378 aa11.47□□□□□ -0.57
CCDC40-212ENST00000574799 C16orf71Q8IYS4 520 aaPredicted RBP11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms