RNA–Protein interactions for RNA: ENST00000574501.1

SMG6-215, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

Gene SMG6, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-215ENST00000574501 KCNJ4P48050 445 aa17.21■□□□□ 0.35
SMG6-215ENST00000574501 CCDC112Q8NEF3 446 aa17.21■□□□□ 0.35
SMG6-215ENST00000574501 KIF18AQ8NI77 898 aa17.21■□□□□ 0.35
SMG6-215ENST00000574501 KIAA0232Q92628 1395 aa17.21■□□□□ 0.35
SMG6-215ENST00000574501 FAM200AQ8TCP9 573 aa17.21■□□□□ 0.35
SMG6-215ENST00000574501 MIS18AQ9NYP9 233 aa17.21■□□□□ 0.35
SMG6-215ENST00000574501 ATP6V1DQ9Y5K8 247 aa17.21■□□□□ 0.35
SMG6-215ENST00000574501 PNMA6EA0A0J9YXQ4 647 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 LARGE1O95461 756 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 SYCP1Q15431 976 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.2■□□□□ 0.34
SMG6-215ENST00000574501 NAP1L2Q9ULW6 460 aaPredicted RBP17.2■□□□□ 0.34
SMG6-215ENST00000574501 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.2■□□□□ 0.34
SMG6-215ENST00000574501 SNX14Q9Y5W7 946 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 MORC2Q9Y6X9 1032 aaPredicted RBP17.2■□□□□ 0.34
SMG6-215ENST00000574501 V9GYY5 206 aaPredicted RBP17.2■□□□□ 0.34
SMG6-215ENST00000574501 KIF20BQ96Q89 1820 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 SSH2Q76I76 1423 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 TERF2Q15554 542 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 TPD52L1Q16890 204 aaPredicted RBP17.2■□□□□ 0.34
SMG6-215ENST00000574501 CKAP2LQ8IYA6 745 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 RASEFQ8IZ41 740 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 LIMCH1Q9UPQ0 1083 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 MRVI1Q9Y6F6 885 aa17.2■□□□□ 0.34
SMG6-215ENST00000574501 GNAI2P04899 355 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 GJB2P29033 226 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 CCDC83Q8IWF9 413 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 IL17RAQ96F46 866 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 TTC14Q96N46 770 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 VPS37CA5D8V6 355 aaPredicted RBP17.19■□□□□ 0.34
SMG6-215ENST00000574501 TYRO3Q06418 890 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 ZSCAN25Q6NSZ9 544 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 NME9Q86XW9 330 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 TRIM5Q9C035 493 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 IL1RAPL2Q9NP60 686 aa17.19■□□□□ 0.34
SMG6-215ENST00000574501 CPSF1Q10570 1443 aaKnown RBP17.18■□□□□ 0.34
SMG6-215ENST00000574501 NEXMIFQ5QGS0 1516 aa17.18■□□□□ 0.34
SMG6-215ENST00000574501 IRX5P78411 483 aaPredicted RBP17.18■□□□□ 0.34
SMG6-215ENST00000574501 MAPK8IP2Q13387 824 aaPredicted RBP17.18■□□□□ 0.34
SMG6-215ENST00000574501 AEBP1Q8IUX7 1158 aa17.18■□□□□ 0.34
SMG6-215ENST00000574501 MTMR6Q9Y217 621 aa17.18■□□□□ 0.34
SMG6-215ENST00000574501 PTPRMP28827 1452 aa17.18■□□□□ 0.34
SMG6-215ENST00000574501 ERICH4A6NGS2 130 aa17.18■□□□□ 0.34
SMG6-215ENST00000574501 CHL1O00533 1208 aa17.18■□□□□ 0.34
SMG6-215ENST00000574501 CDK11BP21127 795 aaKnown RBP17.18■□□□□ 0.34
SMG6-215ENST00000574501 LIG1P18858 919 aa17.17■□□□□ 0.34
SMG6-215ENST00000574501 MAP3K11Q16584 847 aa17.17■□□□□ 0.34
SMG6-215ENST00000574501 ANO6Q4KMQ2 910 aa17.17■□□□□ 0.34
SMG6-215ENST00000574501 NUTM1Q86Y26 1132 aa17.17■□□□□ 0.34
SMG6-215ENST00000574501 CBX8Q9HC52 389 aa17.17■□□□□ 0.34
SMG6-215ENST00000574501 PAXBP1Q9Y5B6 917 aa17.17■□□□□ 0.34
SMG6-215ENST00000574501 HAP1P54257 671 aaPredicted RBP17.17■□□□□ 0.34
SMG6-215ENST00000574501 KMT5BQ4FZB7 885 aa17.17■□□□□ 0.34
SMG6-215ENST00000574501 FAM173BQ6P4H8 233 aa17.16■□□□□ 0.34
SMG6-215ENST00000574501 KRT222Q8N1A0 295 aa17.16■□□□□ 0.34
SMG6-215ENST00000574501 CACTINQ8WUQ7 758 aaKnown RBP17.16■□□□□ 0.34
SMG6-215ENST00000574501 NUP62CLQ9H1M0 184 aa17.16■□□□□ 0.34
SMG6-215ENST00000574501 KIDINS220Q9ULH0 1771 aa17.16■□□□□ 0.34
SMG6-215ENST00000574501 NEO1Q92859 1461 aa17.16■□□□□ 0.34
SMG6-215ENST00000574501 RAPGEF3O95398 923 aa17.16■□□□□ 0.34
SMG6-215ENST00000574501 CASTP20810 708 aaKnown RBP17.16■□□□□ 0.34
SMG6-215ENST00000574501 CEP135Q66GS9 1140 aa17.16■□□□□ 0.34
SMG6-215ENST00000574501 ST7Q9NRC1 585 aa17.16■□□□□ 0.34
SMG6-215ENST00000574501 CCT4P50991 539 aaKnown RBP17.15■□□□□ 0.34
SMG6-215ENST00000574501 ZNF75DP51815 510 aa17.15■□□□□ 0.34
SMG6-215ENST00000574501 IDI1Q13907 227 aa17.15■□□□□ 0.34
SMG6-215ENST00000574501 TTC6Q86TZ1 520 aa17.15■□□□□ 0.34
SMG6-215ENST00000574501 FERMT3Q86UX7 667 aa17.15■□□□□ 0.34
SMG6-215ENST00000574501 STAP2Q9UGK3 403 aa17.15■□□□□ 0.34
SMG6-215ENST00000574501 TUBGCP6Q96RT7 1819 aa17.15■□□□□ 0.34
SMG6-215ENST00000574501 SPG7Q9UQ90 795 aa17.15■□□□□ 0.34
SMG6-215ENST00000574501 RAD50Q92878 1312 aa17.14■□□□□ 0.33
SMG6-215ENST00000574501 CCDC144BQ3MJ40 725 aa17.14■□□□□ 0.33
SMG6-215ENST00000574501 SULT6B1Q6IMI4 303 aa17.14■□□□□ 0.33
SMG6-215ENST00000574501 CCDC144CPQ8IYA2 1237 aa17.14■□□□□ 0.33
SMG6-215ENST00000574501 DDX54Q8TDD1 881 aaKnown RBP17.14■□□□□ 0.33
SMG6-215ENST00000574501 ZNF215Q9UL58 517 aaPredicted RBP17.14■□□□□ 0.33
SMG6-215ENST00000574501 CCDC66A2RUB6 948 aa17.13■□□□□ 0.33
SMG6-215ENST00000574501 USP27XA6NNY8 438 aa17.13■□□□□ 0.33
SMG6-215ENST00000574501 PLA2G4DQ86XP0 818 aa17.13■□□□□ 0.33
SMG6-215ENST00000574501 RTF1Q92541 710 aaKnown RBP17.13■□□□□ 0.33
SMG6-215ENST00000574501 TNMDQ9H2S6 317 aa17.13■□□□□ 0.33
SMG6-215ENST00000574501 CLIP2Q9UDT6 1046 aa17.13■□□□□ 0.33
SMG6-215ENST00000574501 HYPKQ9NX55 129 aa17.13■□□□□ 0.33
SMG6-215ENST00000574501 DACT1Q9NYF0 836 aa17.13■□□□□ 0.33
SMG6-215ENST00000574501 NPHP1O15259 732 aa17.12■□□□□ 0.33
SMG6-215ENST00000574501 SGSM2O43147 1006 aa17.12■□□□□ 0.33
SMG6-215ENST00000574501 ARID5BQ14865 1188 aa17.12■□□□□ 0.33
SMG6-215ENST00000574501 ZNF397Q8NF99 534 aaPredicted RBP17.12■□□□□ 0.33
SMG6-215ENST00000574501 LSG1Q9H089 658 aaKnown RBP17.12■□□□□ 0.33
SMG6-215ENST00000574501 ATP8B2P98198 1209 aa17.12■□□□□ 0.33
SMG6-215ENST00000574501 CWC27Q6UX04 472 aaKnown RBP17.12■□□□□ 0.33
SMG6-215ENST00000574501 NECAB1Q8N987 351 aa17.12■□□□□ 0.33
SMG6-215ENST00000574501 FBXO38Q6PIJ6 1188 aa17.11■□□□□ 0.33
SMG6-215ENST00000574501 WAPLQ7Z5K2 1190 aa17.11■□□□□ 0.33
SMG6-215ENST00000574501 PLCD3Q8N3E9 789 aa17.11■□□□□ 0.33
SMG6-215ENST00000574501 TIGD1Q96MW7 591 aa17.11■□□□□ 0.33
SMG6-215ENST00000574501 LRRFIP2Q9Y608 721 aaKnown RBP17.11■□□□□ 0.33
SMG6-215ENST00000574501 ELF2Q15723 593 aa17.11■□□□□ 0.33
SMG6-215ENST00000574501 FRMPD1Q5SYB0 1578 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 113.6 ms