RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 KDM6AO15550 1401 aaPredicted RBP8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 MRC1P22897 1456 aa8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 CEMIPQ8WUJ3 1361 aa8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 RNMTO43148 476 aaKnown RBP8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 PPP1R37O75864 691 aa8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 CABP4P57796 275 aa8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 IRX5P78411 483 aaPredicted RBP8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 SYTL4Q96C24 671 aaPredicted RBP8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 PLSCR2Q9NRY7 297 aa8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 IFT57Q9NWB7 429 aa8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 RGS12O14924 1447 aa8.54□□□□□ -1.04
CTDNEP1-204ENST00000570484 TTC5Q8N0Z6 440 aa8.53□□□□□ -1.04
CTDNEP1-204ENST00000570484 DCBLD2Q96PD2 775 aa8.53□□□□□ -1.04
CTDNEP1-204ENST00000570484 SLC52A2Q9HAB3 445 aa8.53□□□□□ -1.04
CTDNEP1-204ENST00000570484 TMOD3Q9NYL9 352 aa8.53□□□□□ -1.04
CTDNEP1-204ENST00000570484 TSPYL4Q9UJ04 414 aa8.53□□□□□ -1.04
CTDNEP1-204ENST00000570484 FANCIQ9NVI1 1328 aa8.53□□□□□ -1.04
CTDNEP1-204ENST00000570484 SHANK3Q9BYB0 1731 aa8.52□□□□□ -1.05
CTDNEP1-204ENST00000570484 PDCD7Q8N8D1 485 aaKnown RBP8.52□□□□□ -1.05
CTDNEP1-204ENST00000570484 ADAMTS7Q9UKP4 1686 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 BTBD11A6QL63 1104 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 ERVV-2B6SEH9 535 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 TAF7Q15545 349 aaPredicted RBP8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 KRT27Q7Z3Y8 459 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 MARCH10Q8NA82 808 aaPredicted RBP8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 IL17REQ8NFR9 667 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 TSR2Q969E8 191 aaKnown RBP8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 CDCA7LQ96GN5 454 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 LGR6Q9HBX8 967 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 BABAM1Q9NWV8 329 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 DOT1LQ8TEK3 1739 aa8.51□□□□□ -1.05
CTDNEP1-204ENST00000570484 ONECUT3O60422 494 aaPredicted RBP8.5□□□□□ -1.05
CTDNEP1-204ENST00000570484 SLFN5Q08AF3 891 aa8.5□□□□□ -1.05
CTDNEP1-204ENST00000570484 OCEL1Q9H607 264 aa8.5□□□□□ -1.05
CTDNEP1-204ENST00000570484 MBIPQ9NS73 344 aa8.5□□□□□ -1.05
CTDNEP1-204ENST00000570484 POTEAQ6S8J7 498 aa8.49□□□□□ -1.05
CTDNEP1-204ENST00000570484 FAM196AQ6ZSG2 479 aa8.49□□□□□ -1.05
CTDNEP1-204ENST00000570484 NFATC2IPQ8NCF5 419 aa8.49□□□□□ -1.05
CTDNEP1-204ENST00000570484 ACSBG1Q96GR2 724 aa8.49□□□□□ -1.05
CTDNEP1-204ENST00000570484 TOGARAM1Q9Y4F4 1720 aa8.49□□□□□ -1.05
CTDNEP1-204ENST00000570484 DLG5Q8TDM6 1919 aa8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 BCL9O00512 1426 aa8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 CHL1O00533 1208 aa8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 CT47B1P0C2W7 299 aaPredicted RBP8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 EXOSC9Q06265 439 aaKnown RBP8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 DUSP27Q5VZP5 1158 aa8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 SLC39A7Q92504 469 aa8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 CHMP4AQ9BY43 222 aa8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 RGS17Q9UGC6 210 aaPredicted RBP8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 SCN11AQ9UI33 1791 aa8.48□□□□□ -1.05
CTDNEP1-204ENST00000570484 NHSQ6T4R5 1651 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 POTEFA5A3E0 1075 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 ZNF853P0CG23 659 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 C7P10643 843 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 PRIM1P49642 420 aaKnown RBP8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 TWISTNBQ3B726 338 aaPredicted RBP8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 FAM182BQ5T319 152 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 ZNF790Q6PG37 636 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 FMNL2Q96PY5 1086 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 MIS18AQ9NYP9 233 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 SOS1Q07889 1333 aaPredicted RBP8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 PALLDQ8WX93 1383 aa8.47□□□□□ -1.05
CTDNEP1-204ENST00000570484 CANXP27824 592 aaKnown RBP8.46□□□□□ -1.06
CTDNEP1-204ENST00000570484 SLC39A6Q13433 755 aa8.46□□□□□ -1.06
CTDNEP1-204ENST00000570484 PIGBQ92521 554 aa8.46□□□□□ -1.06
CTDNEP1-204ENST00000570484 SMARCC1Q92922 1105 aaPredicted RBP8.46□□□□□ -1.06
CTDNEP1-204ENST00000570484 TMEM121BQ9BXQ6 578 aaPredicted RBP8.46□□□□□ -1.06
CTDNEP1-204ENST00000570484 PAPPAQ13219 1627 aa8.46□□□□□ -1.06
CTDNEP1-204ENST00000570484 KDM3BQ7LBC6 1761 aa8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 ELL2O00472 640 aaPredicted RBP8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 PTCD1O75127 700 aaKnown RBP8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 HOXB7P09629 217 aa8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 EIF4A1P60842 406 aaKnown RBP8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 DPY19L2Q6NUT2 758 aa8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 TRMT2AQ8IZ69 625 aaKnown RBP8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 ZNF428Q96B54 188 aa8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 STK31Q9BXU1 1019 aa8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 SMC4Q9NTJ3 1288 aa8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 RCAN3Q9UKA8 241 aa8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 HEG1Q9ULI3 1381 aa8.45□□□□□ -1.06
CTDNEP1-204ENST00000570484 KCPQ6ZWJ8 1503 aa8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 SIPA1L3O60292 1781 aaPredicted RBP8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 KCNQ2O43526 872 aa8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 SNRPA1P09661 255 aaKnown RBP8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 SF3B2Q13435 895 aaKnown RBP8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 HDGFL1Q5TGJ6 251 aa8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 ZNF496Q96IT1 587 aaPredicted RBP8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 COLQQ9Y215 455 aaPredicted RBP8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 KIF16BQ96L93 1317 aa8.44□□□□□ -1.06
CTDNEP1-204ENST00000570484 KCNQ3O43525 872 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 TRIM37O94972 964 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 NEFLP07196 543 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 KRT24Q2M2I5 525 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 CCDC30Q5VVM6 783 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 LHX8Q68G74 356 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 C8orf58Q8NAV2 365 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 ATG3Q9NT62 314 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 ASAP1Q9ULH1 1129 aa8.43□□□□□ -1.06
CTDNEP1-204ENST00000570484 STARD3NLO95772 234 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms