RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	PLEKHF1	Q96S99	279 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	DACT1	Q9NYF0	836 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	PTPRC	P08575	1304 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	ANO6	Q4KMQ2	910 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	KIF1BP	Q96EK5	621 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	DNAJC2	Q99543	621 aa	Known RBP	13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	BCL2L12	Q9HB09	334 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	PLXNC1	O60486	1568 aa		13.5	□□□□□ -0.25
CLN3-238	ENST00000569430	PPP1R42	Q7Z4L9	355 aa		13.49	□□□□□ -0.25
CLN3-238	ENST00000569430	PDILT	Q8N807	584 aa		13.49	□□□□□ -0.25
CLN3-238	ENST00000569430	PPP6R1	Q9UPN7	881 aa		13.49	□□□□□ -0.25
CLN3-238	ENST00000569430	CPLX1	O14810	134 aa		13.49	□□□□□ -0.25
CLN3-238	ENST00000569430	BBX	Q8WY36	941 aa	Predicted RBP	13.49	□□□□□ -0.25
CLN3-238	ENST00000569430	INTS4	Q96HW7	963 aa	Known RBP	13.49	□□□□□ -0.25
CLN3-238	ENST00000569430	NAT10	Q9H0A0	1025 aa	Known RBP	13.49	□□□□□ -0.25
CLN3-238	ENST00000569430	ANAPC15	P60006	121 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	HSP90AB2P	Q58FF8	381 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	TRPM2	O94759	1503 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	TAF7	Q15545	349 aa	Predicted RBP	13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	FAM200A	Q8TCP9	573 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	NEUROD6	Q96NK8	337 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	BOLA2	Q9H3K6	86 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	ANXA1	P04083	346 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	GUCY1B3	Q02153	619 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	SCAND2P	Q9GZW5	306 aa	Predicted RBP	13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	DNAJC25	Q9H1X3	360 aa		13.48	□□□□□ -0.25
CLN3-238	ENST00000569430	FOXO3	O43524	673 aa		13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	GLRX3	O76003	335 aa	Known RBP	13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	MSH6	P52701	1360 aa		13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	POLR3G	O15318	223 aa	Predicted RBP	13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	GPS2	Q13227	327 aa		13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	PHF23	Q9BUL5	403 aa	Predicted RBP	13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	NEXN	Q0ZGT2	675 aa		13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	SKIDA1	Q1XH10	827 aa		13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	SYNE3	Q6ZMZ3	975 aa		13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	KIF18A	Q8NI77	898 aa		13.47	□□□□□ -0.25
CLN3-238	ENST00000569430	TYRO3	Q06418	890 aa		13.46	□□□□□ -0.25
CLN3-238	ENST00000569430	CEP135	Q66GS9	1140 aa		13.46	□□□□□ -0.25
CLN3-238	ENST00000569430	GTPBP4	Q9BZE4	634 aa	Known RBP	13.46	□□□□□ -0.25
CLN3-238	ENST00000569430	STK11IP	Q8N1F8	1099 aa		13.46	□□□□□ -0.26
CLN3-238	ENST00000569430	RHPN1	Q8TCX5	695 aa		13.46	□□□□□ -0.26
CLN3-238	ENST00000569430	ZBTB9	Q96C00	473 aa		13.46	□□□□□ -0.26
CLN3-238	ENST00000569430	SH2B1	Q9NRF2	756 aa	Predicted RBP	13.46	□□□□□ -0.26
CLN3-238	ENST00000569430	TOMM22	Q9NS69	142 aa		13.46	□□□□□ -0.26
CLN3-238	ENST00000569430	STK38	Q15208	465 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	RIC3	Q7Z5B4	369 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	ANKRD1	Q15327	319 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	C1orf141	Q5JVX7	400 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	TTLL5	Q6EMB2	1281 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	CEP57L1	Q8IYX8	460 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	GOLGA6L1	Q8N7Z2	621 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	UBXN4	Q92575	508 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	ABCC4	O15439	1325 aa		13.45	□□□□□ -0.26
CLN3-238	ENST00000569430	ZDHHC9	Q9Y397	364 aa		13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	PNMA6E	A0A0J9YXQ4	647 aa		13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	CFAP45	Q9UL16	551 aa		13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	PES1	O00541	588 aa	Known RBP	13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	SKIL	P12757	684 aa		13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	ATP8B2	P98198	1209 aa		13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	SHROOM2	Q13796	1616 aa		13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	YEATS2	Q9ULM3	1422 aa		13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	ZNF518A	Q6AHZ1	1483 aa		13.44	□□□□□ -0.26
CLN3-238	ENST00000569430	BIN1	O00499	593 aa		13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	LRMP	Q12912	555 aa		13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	PDLIM2	Q96JY6	352 aa		13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	PYCARD	Q9ULZ3	195 aa		13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	SYNM	O15061	1565 aa		13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	SERPINC1	P01008	464 aa		13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	DDX19A	Q9NUU7	478 aa	Known RBP	13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	SPHKAP	Q2M3C7	1700 aa		13.43	□□□□□ -0.26
CLN3-238	ENST00000569430	USHBP1	Q8N6Y0	703 aa		13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	TMX1	Q9H3N1	280 aa		13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	URI1	O94763	535 aa	Predicted RBP	13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	DDX58	O95786	925 aa	Known RBP	13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	ISM2	Q6H9L7	571 aa		13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	LRRC2	Q9BYS8	371 aa		13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	ABCA6	Q8N139	1617 aa		13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	WASL	O00401	505 aa	Predicted RBP	13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	ATP2B1	P20020	1258 aa		13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	SFPQ	P23246	707 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	EIF4A2	Q14240	407 aa	Known RBP	13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	TAF7L	Q5H9L4	462 aa		13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	KRT222	Q8N1A0	295 aa		13.42	□□□□□ -0.26
CLN3-238	ENST00000569430	HIP1	O00291	1037 aa		13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	PAXBP1	Q9Y5B6	917 aa		13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	PI4KAP2	A4QPH2	592 aa		13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	GNAT3	A8MTJ3	354 aa		13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	CSB-PGBD3	P0DP91	1061 aa		13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	PI4KAP1	Q8N8J0	262 aa		13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	ZNF396	Q96N95	335 aa	Predicted RBP	13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	APP	P05067	770 aa		13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	CCT2	P78371	535 aa	Known RBP	13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	ECHDC1	Q9NTX5	307 aa		13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	KDM5A	P29375	1690 aa	Known RBP	13.41	□□□□□ -0.26
CLN3-238	ENST00000569430	IL13	P35225	146 aa		13.4	□□□□□ -0.26
CLN3-238	ENST00000569430	DDIT3	P35638	169 aa		13.4	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms