RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 F6X3S4 739 aa23.97■■□□□ 1.43
CLN3-233ENST00000568452 SLC4A10Q6U841 1118 aa23.97■■□□□ 1.43
CLN3-233ENST00000568452 UBR2Q8IWV8 1755 aa23.97■■□□□ 1.43
CLN3-233ENST00000568452 HDAC1Q13547 482 aaPredicted RBP23.96■■□□□ 1.43
CLN3-233ENST00000568452 KCPQ6ZWJ8 1503 aa23.95■■□□□ 1.42
CLN3-233ENST00000568452 LAMB4A4D0S4 1761 aa23.94■■□□□ 1.42
CLN3-233ENST00000568452 ERBB4Q15303 1308 aa23.94■■□□□ 1.42
CLN3-233ENST00000568452 PIGBQ92521 554 aa23.94■■□□□ 1.42
CLN3-233ENST00000568452 GLI3P10071 1580 aa23.93■■□□□ 1.42
CLN3-233ENST00000568452 BCL9O00512 1426 aa23.93■■□□□ 1.42
CLN3-233ENST00000568452 DDX58O95786 925 aaKnown RBP23.93■■□□□ 1.42
CLN3-233ENST00000568452 ITGB4P16144 1822 aa23.93■■□□□ 1.42
CLN3-233ENST00000568452 N4BP2Q86UW6 1770 aaPredicted RBP23.92■■□□□ 1.42
CLN3-233ENST00000568452 ANXA1P04083 346 aa23.92■■□□□ 1.42
CLN3-233ENST00000568452 FAM98CQ17RN3 349 aaKnown RBP23.92■■□□□ 1.42
CLN3-233ENST00000568452 USP16Q9Y5T5 823 aa23.92■■□□□ 1.42
CLN3-233ENST00000568452 PDIA6Q15084 440 aa23.92■■□□□ 1.42
CLN3-233ENST00000568452 PROSER3Q2NL68 480 aa23.92■■□□□ 1.42
CLN3-233ENST00000568452 ZNF772Q68DY9 489 aaPredicted RBP23.92■■□□□ 1.42
CLN3-233ENST00000568452 DNAAF4Q8WXU2 420 aa23.92■■□□□ 1.42
CLN3-233ENST00000568452 TRPC5Q9UL62 973 aaPredicted RBP23.92■■□□□ 1.42
CLN3-233ENST00000568452 VSIG10Q8N0Z9 540 aa23.9■■□□□ 1.42
CLN3-233ENST00000568452 MARCH10Q8NA82 808 aaPredicted RBP23.9■■□□□ 1.42
CLN3-233ENST00000568452 TEX13AQ9BXU3 409 aaPredicted RBP23.9■■□□□ 1.42
CLN3-233ENST00000568452 ATRNO75882 1429 aa23.9■■□□□ 1.42
CLN3-233ENST00000568452 PI4KAP2A4QPH2 592 aa23.89■■□□□ 1.42
CLN3-233ENST00000568452 PTCD1O75127 700 aaKnown RBP23.89■■□□□ 1.42
CLN3-233ENST00000568452 GNAI3P08754 354 aa23.89■■□□□ 1.42
CLN3-233ENST00000568452 KSR2Q6VAB6 950 aa23.89■■□□□ 1.42
CLN3-233ENST00000568452 PI4KAP1Q8N8J0 262 aa23.89■■□□□ 1.42
CLN3-233ENST00000568452 ATG3Q9NT62 314 aa23.89■■□□□ 1.42
CLN3-233ENST00000568452 SRCIN1Q9C0H9 1055 aa23.88■■□□□ 1.41
CLN3-233ENST00000568452 QTRT2Q9H974 415 aaKnown RBP23.88■■□□□ 1.41
CLN3-233ENST00000568452 ATP10DQ9P241 1426 aa23.88■■□□□ 1.41
CLN3-233ENST00000568452 DOT1LQ8TEK3 1739 aa23.88■■□□□ 1.41
CLN3-233ENST00000568452 MEIS3Q99687 375 aa23.88■■□□□ 1.41
CLN3-233ENST00000568452 ASAP1Q9ULH1 1129 aa23.88■■□□□ 1.41
CLN3-233ENST00000568452 ADCY9O60503 1353 aa23.87■■□□□ 1.41
CLN3-233ENST00000568452 PRIM1P49642 420 aaKnown RBP23.87■■□□□ 1.41
CLN3-233ENST00000568452 RPAP2Q8IXW5 612 aaPredicted RBP23.87■■□□□ 1.41
CLN3-233ENST00000568452 SYTL4Q96C24 671 aaPredicted RBP23.87■■□□□ 1.41
CLN3-233ENST00000568452 GJD4Q96KN9 370 aaPredicted RBP23.87■■□□□ 1.41
CLN3-233ENST00000568452 C1orf115Q9H7X2 142 aa23.87■■□□□ 1.41
CLN3-233ENST00000568452 MYL6BP14649 208 aa23.86■■□□□ 1.41
CLN3-233ENST00000568452 MAP3K2Q9Y2U5 619 aa23.85■■□□□ 1.41
CLN3-233ENST00000568452 BEND3Q5T5X7 828 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 SMC5Q8IY18 1101 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 A0A0G2JS52 829 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 ALDH1L1O75891 902 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 GNAI2P04899 355 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 MYT1Q01538 1121 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 AIMP1Q12904 312 aaKnown RBP23.84■■□□□ 1.41
CLN3-233ENST00000568452 LRP10Q7Z4F1 713 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 XAGE3Q8WTP9 111 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 THSD7AQ9UPZ6 1657 aa23.84■■□□□ 1.41
CLN3-233ENST00000568452 COPS6Q7L5N1 327 aa23.83■■□□□ 1.41
CLN3-233ENST00000568452 ANKRD44Q8N8A2 993 aa23.83■■□□□ 1.41
CLN3-233ENST00000568452 RBM42Q9BTD8 480 aaKnown RBP23.83■■□□□ 1.41
CLN3-233ENST00000568452 RIC3Q7Z5B4 369 aa23.82■■□□□ 1.4
CLN3-233ENST00000568452 GCC1Q96CN9 775 aa23.82■■□□□ 1.4
CLN3-233ENST00000568452 STARD3NLO95772 234 aa23.81■■□□□ 1.4
CLN3-233ENST00000568452 CEP85Q6P2H3 762 aa23.81■■□□□ 1.4
CLN3-233ENST00000568452 PDZRN3Q9UPQ7 1066 aa23.81■■□□□ 1.4
CLN3-233ENST00000568452 IBTKQ9P2D0 1353 aaPredicted RBP23.8■■□□□ 1.4
CLN3-233ENST00000568452 UBTFL1P0CB47 393 aaPredicted RBP23.8■■□□□ 1.4
CLN3-233ENST00000568452 ANKRD13DQ6ZTN6 518 aa23.8■■□□□ 1.4
CLN3-233ENST00000568452 SIRT2Q8IXJ6 389 aa23.8■■□□□ 1.4
CLN3-233ENST00000568452 LINS1Q8NG48 757 aa23.8■■□□□ 1.4
CLN3-233ENST00000568452 ACSBG1Q96GR2 724 aa23.8■■□□□ 1.4
CLN3-233ENST00000568452 USP44Q9H0E7 712 aa23.8■■□□□ 1.4
CLN3-233ENST00000568452 RGS17Q9UGC6 210 aaPredicted RBP23.8■■□□□ 1.4
CLN3-233ENST00000568452 HMMRO75330 724 aa23.79■■□□□ 1.4
CLN3-233ENST00000568452 NEXNQ0ZGT2 675 aa23.79■■□□□ 1.4
CLN3-233ENST00000568452 HDAC5Q9UQL6 1122 aa23.79■■□□□ 1.4
CLN3-233ENST00000568452 KAT6BQ8WYB5 2073 aa23.79■■□□□ 1.4
CLN3-233ENST00000568452 NBPF26B4DH59 902 aa23.78■■□□□ 1.4
CLN3-233ENST00000568452 NBPF14Q5TI25 921 aa23.78■■□□□ 1.4
CLN3-233ENST00000568452 NBPF10Q6P3W6 841 aaKnown RBP23.78■■□□□ 1.4
CLN3-233ENST00000568452 DNAJC10Q8IXB1 793 aa23.78■■□□□ 1.4
CLN3-233ENST00000568452 NBPF15Q8N660 670 aa23.78■■□□□ 1.4
CLN3-233ENST00000568452 SMARCC1Q92922 1105 aaPredicted RBP23.78■■□□□ 1.4
CLN3-233ENST00000568452 TSHZ2Q9NRE2 1034 aa23.78■■□□□ 1.4
CLN3-233ENST00000568452 ONECUT3O60422 494 aaPredicted RBP23.77■■□□□ 1.4
CLN3-233ENST00000568452 A1BGP04217 495 aa23.77■■□□□ 1.4
CLN3-233ENST00000568452 METTL22Q9BUU2 404 aaPredicted RBP23.77■■□□□ 1.4
CLN3-233ENST00000568452 RBM6P78332 1123 aaKnown RBP23.77■■□□□ 1.4
CLN3-233ENST00000568452 PLBD2Q8NHP8 589 aa23.77■■□□□ 1.4
CLN3-233ENST00000568452 PIP4K2AP48426 406 aaPredicted RBP23.76■■□□□ 1.39
CLN3-233ENST00000568452 RGS3P49796 1198 aa23.75■■□□□ 1.39
CLN3-233ENST00000568452 SKAP1Q86WV1 359 aa23.74■■□□□ 1.39
CLN3-233ENST00000568452 RXRBP28702 533 aa23.73■■□□□ 1.39
CLN3-233ENST00000568452 NUCB1Q02818 461 aa23.73■■□□□ 1.39
CLN3-233ENST00000568452 POTEAQ6S8J7 498 aa23.73■■□□□ 1.39
CLN3-233ENST00000568452 DCTPP1Q9H773 170 aa23.73■■□□□ 1.39
CLN3-233ENST00000568452 C9orf78Q9NZ63 289 aaPredicted RBP23.73■■□□□ 1.39
CLN3-233ENST00000568452 SLC4A9Q96Q91 983 aa23.73■■□□□ 1.39
CLN3-233ENST00000568452 LRRFIP2Q9Y608 721 aaKnown RBP23.73■■□□□ 1.39
CLN3-233ENST00000568452 CYP19A1P11511 503 aaPredicted RBP23.72■■□□□ 1.39
CLN3-233ENST00000568452 ATP8B2P98198 1209 aa23.72■■□□□ 1.39
CLN3-233ENST00000568452 MYD88Q99836 296 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms