RNA–Protein interactions for RNA: ENST00000567954.5

LYRM1-208, Transcript of LYR motif containing 1, human

APPRIS P1 TSL 1 (best) BASIC

Gene LYRM1, Length 460 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LYRM1-208	ENST00000567954	IP6K1	Q92551	441 aa		10.84	□□□□□ -0.67
LYRM1-208	ENST00000567954	LTV1	Q96GA3	475 aa	Predicted RBP	10.84	□□□□□ -0.67
LYRM1-208	ENST00000567954	TRIOBP	Q9H2D6	2365 aa		10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	RANBP2	P49792	3224 aa	Known RBP	10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	TRAF5	O00463	557 aa		10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	C21orf2	O43822	256 aa		10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	C2CD5	Q86YS7	1000 aa		10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	RNF186	Q9NXI6	227 aa		10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	SMG6	Q86US8	1419 aa	Known RBP	10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	RNF123	Q5XPI4	1314 aa		10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	BRCA2	P51587	3418 aa		10.83	□□□□□ -0.68
LYRM1-208	ENST00000567954	ADAMTSL1	Q8N6G6	1762 aa		10.82	□□□□□ -0.68
LYRM1-208	ENST00000567954		H0YIN7	160 aa		10.82	□□□□□ -0.68
LYRM1-208	ENST00000567954	TRPA1	O75762	1119 aa		10.82	□□□□□ -0.68
LYRM1-208	ENST00000567954	PCDH11X	Q9BZA7	1347 aa		10.82	□□□□□ -0.68
LYRM1-208	ENST00000567954	PCDH11Y	Q9BZA8	1340 aa		10.82	□□□□□ -0.68
LYRM1-208	ENST00000567954	COL9A1	P20849	921 aa		10.81	□□□□□ -0.68
LYRM1-208	ENST00000567954	SRP68	Q9UHB9	627 aa	Known RBP	10.81	□□□□□ -0.68
LYRM1-208	ENST00000567954	ASAP1	Q9ULH1	1129 aa		10.81	□□□□□ -0.68
LYRM1-208	ENST00000567954	SPTBN5	Q9NRC6	3674 aa	Known RBP	10.8	□□□□□ -0.68
LYRM1-208	ENST00000567954	USP31	Q70CQ4	1352 aa		10.8	□□□□□ -0.68
LYRM1-208	ENST00000567954	SCN4A	P35499	1836 aa		10.8	□□□□□ -0.68
LYRM1-208	ENST00000567954	CELF2	O95319	508 aa	Known RBP	10.8	□□□□□ -0.68
LYRM1-208	ENST00000567954	MAP3K19	Q56UN5	1328 aa		10.8	□□□□□ -0.68
LYRM1-208	ENST00000567954	CNTNAP4	Q9C0A0	1308 aa		10.8	□□□□□ -0.68
LYRM1-208	ENST00000567954	ZNF541	Q9H0D2	1346 aa		10.8	□□□□□ -0.68
LYRM1-208	ENST00000567954	CD163L1	Q9NR16	1453 aa		10.8	□□□□□ -0.68
LYRM1-208	ENST00000567954	POTEF	A5A3E0	1075 aa		10.79	□□□□□ -0.68
LYRM1-208	ENST00000567954	CYP27B1	O15528	508 aa		10.79	□□□□□ -0.68
LYRM1-208	ENST00000567954	PLA2G5	P39877	138 aa		10.79	□□□□□ -0.68
LYRM1-208	ENST00000567954	FBXO46	Q6PJ61	603 aa	Predicted RBP	10.79	□□□□□ -0.68
LYRM1-208	ENST00000567954	BICDL1	Q6ZP65	573 aa		10.79	□□□□□ -0.68
LYRM1-208	ENST00000567954	RAPGEF4	Q8WZA2	1011 aa		10.79	□□□□□ -0.68
LYRM1-208	ENST00000567954	USP42	Q9H9J4	1324 aa	Known RBP	10.79	□□□□□ -0.68
LYRM1-208	ENST00000567954	CHRDL2	Q6WN34	429 aa		10.78	□□□□□ -0.68
LYRM1-208	ENST00000567954	RBM27	Q9P2N5	1060 aa	Known RBP	10.78	□□□□□ -0.68
LYRM1-208	ENST00000567954	HDAC9	Q9UKV0	1011 aa		10.78	□□□□□ -0.68
LYRM1-208	ENST00000567954		H0YGN5	161 aa		10.77	□□□□□ -0.69
LYRM1-208	ENST00000567954	TAT	P17735	454 aa	Predicted RBP	10.77	□□□□□ -0.69
LYRM1-208	ENST00000567954	HOXD11	P31277	338 aa	Predicted RBP	10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	SOGA3	Q5TF21	947 aa		10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	INTS3	Q68E01	1043 aa	Known RBP	10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	GPC2	Q8N158	579 aa		10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	ZNF622	Q969S3	477 aa	Known RBP eCLIP	10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	STAC3	Q96MF2	364 aa		10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	SLC4A9	Q96Q91	983 aa		10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	MPHOSPH9	Q99550	1183 aa		10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	ATG3	Q9NT62	314 aa		10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	TMOD3	Q9NYL9	352 aa		10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	KDM2A	Q9Y2K7	1162 aa		10.76	□□□□□ -0.69
LYRM1-208	ENST00000567954	LAMA3	Q16787	3333 aa		10.75	□□□□□ -0.69
LYRM1-208	ENST00000567954	FAM155A	B1AL88	458 aa	Predicted RBP	10.75	□□□□□ -0.69
LYRM1-208	ENST00000567954	KIF23	Q02241	960 aa	Predicted RBP	10.75	□□□□□ -0.69
LYRM1-208	ENST00000567954	NKX1-1	Q15270	411 aa	Predicted RBP	10.75	□□□□□ -0.69
LYRM1-208	ENST00000567954	USP50	Q70EL3	339 aa	Predicted RBP	10.75	□□□□□ -0.69
LYRM1-208	ENST00000567954	SYNE4	Q8N205	404 aa		10.75	□□□□□ -0.69
LYRM1-208	ENST00000567954	FAM122A	Q96E09	287 aa		10.75	□□□□□ -0.69
LYRM1-208	ENST00000567954	PDZRN3	Q9UPQ7	1066 aa		10.75	□□□□□ -0.69
LYRM1-208	ENST00000567954	MAP2	P11137	1827 aa	Known RBP	10.74	□□□□□ -0.69
LYRM1-208	ENST00000567954	FZD9	O00144	591 aa		10.74	□□□□□ -0.69
LYRM1-208	ENST00000567954	NBPF6	Q5VWK0	638 aa		10.74	□□□□□ -0.69
LYRM1-208	ENST00000567954	NBPF4	Q96M43	638 aa		10.74	□□□□□ -0.69
LYRM1-208	ENST00000567954	SERPINB2	P05120	415 aa		10.73	□□□□□ -0.69
LYRM1-208	ENST00000567954	LMOD1	P29536	600 aa	Predicted RBP	10.73	□□□□□ -0.69
LYRM1-208	ENST00000567954	HUNK	P57058	714 aa		10.73	□□□□□ -0.69
LYRM1-208	ENST00000567954	NME9	Q86XW9	330 aa		10.73	□□□□□ -0.69
LYRM1-208	ENST00000567954	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.73	□□□□□ -0.69
LYRM1-208	ENST00000567954	DCAF11	Q8TEB1	546 aa		10.73	□□□□□ -0.69
LYRM1-208	ENST00000567954	CCDC102A	Q96A19	550 aa		10.73	□□□□□ -0.69
LYRM1-208	ENST00000567954	KDR	P35968	1356 aa		10.73	□□□□□ -0.69
LYRM1-208	ENST00000567954	HOXC9	P31274	260 aa		10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	NFIX	Q14938	502 aa		10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	ANKRD13D	Q6ZTN6	518 aa		10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	USHBP1	Q8N6Y0	703 aa		10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	ZNF296	Q8WUU4	475 aa	Predicted RBP	10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	CSRNP1	Q96S65	589 aa		10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	STXBP5L	Q9Y2K9	1186 aa		10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	KTN1	Q86UP2	1357 aa	Known RBP	10.72	□□□□□ -0.69
LYRM1-208	ENST00000567954	ZPR1	O75312	459 aa		10.71	□□□□□ -0.69
LYRM1-208	ENST00000567954	EN2	P19622	333 aa	Predicted RBP	10.71	□□□□□ -0.69
LYRM1-208	ENST00000567954	EPS15	P42566	896 aa		10.71	□□□□□ -0.69
LYRM1-208	ENST00000567954	ERBB4	Q15303	1308 aa		10.71	□□□□□ -0.69
LYRM1-208	ENST00000567954	RGMB	Q6NW40	437 aa		10.71	□□□□□ -0.69
LYRM1-208	ENST00000567954	SNX27	Q96L92	541 aa		10.71	□□□□□ -0.69
LYRM1-208	ENST00000567954	RBM42	Q9BTD8	480 aa	Known RBP	10.71	□□□□□ -0.69
LYRM1-208	ENST00000567954	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.71	□□□□□ -0.69
LYRM1-208	ENST00000567954	CCDC88A	Q3V6T2	1871 aa		10.7	□□□□□ -0.7
LYRM1-208	ENST00000567954	FAM208A	Q9UK61	1670 aa	Known RBP	10.7	□□□□□ -0.7
LYRM1-208	ENST00000567954	USPL1	Q5W0Q7	1092 aa		10.7	□□□□□ -0.7
LYRM1-208	ENST00000567954	REM2	Q8IYK8	340 aa	Predicted RBP	10.7	□□□□□ -0.7
LYRM1-208	ENST00000567954	CNKSR1	Q969H4	720 aa		10.7	□□□□□ -0.7
LYRM1-208	ENST00000567954	PRO3102	Q9H379	93 aa		10.7	□□□□□ -0.7
LYRM1-208	ENST00000567954	ZNF408	Q9H9D4	720 aa		10.7	□□□□□ -0.7
LYRM1-208	ENST00000567954	DICER1	Q9UPY3	1922 aa	Known RBP	10.7	□□□□□ -0.7
LYRM1-208	ENST00000567954	PDE6B	P35913	854 aa		10.69	□□□□□ -0.7
LYRM1-208	ENST00000567954	SCNN1D	P51172	638 aa		10.69	□□□□□ -0.7
LYRM1-208	ENST00000567954	CCDC24	Q8N4L8	307 aa		10.69	□□□□□ -0.7
LYRM1-208	ENST00000567954	GLIS2	Q9BZE0	524 aa	Predicted RBP	10.69	□□□□□ -0.7
LYRM1-208	ENST00000567954	ZNF277	Q9NRM2	450 aa	Predicted RBP	10.69	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms