RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 TM4SF1P30408 202 aa24.83■■□□□ 1.57
SMPD3-209ENST00000567223 FKBP8Q14318 412 aa24.83■■□□□ 1.57
SMPD3-209ENST00000567223 FMNL2Q96PY5 1086 aa24.83■■□□□ 1.57
SMPD3-209ENST00000567223 ZPR1O75312 459 aa24.82■■□□□ 1.56
SMPD3-209ENST00000567223 RTF1Q92541 710 aaKnown RBP24.82■■□□□ 1.56
SMPD3-209ENST00000567223 SRP68Q9UHB9 627 aaKnown RBP24.82■■□□□ 1.56
SMPD3-209ENST00000567223 BTBD11A6QL63 1104 aa24.81■■□□□ 1.56
SMPD3-209ENST00000567223 EIF5P55010 431 aaKnown RBP24.81■■□□□ 1.56
SMPD3-209ENST00000567223 PLEKHF1Q96S99 279 aa24.81■■□□□ 1.56
SMPD3-209ENST00000567223 PNNQ9H307 717 aaKnown RBP24.8■■□□□ 1.56
SMPD3-209ENST00000567223 BRCA1P38398 1863 aaKnown RBP24.79■■□□□ 1.56
SMPD3-209ENST00000567223 NRXN2Q9P2S2 1712 aa24.79■■□□□ 1.56
SMPD3-209ENST00000567223 DDR1Q08345 913 aa24.79■■□□□ 1.56
SMPD3-209ENST00000567223 USPL1Q5W0Q7 1092 aa24.79■■□□□ 1.56
SMPD3-209ENST00000567223 A0A087WZG4 1122 aa24.78■■□□□ 1.56
SMPD3-209ENST00000567223 POLRMTO00411 1230 aaKnown RBP24.78■■□□□ 1.56
SMPD3-209ENST00000567223 NEFMP07197 916 aa24.78■■□□□ 1.56
SMPD3-209ENST00000567223 IL6STP40189 918 aaPredicted RBP24.77■■□□□ 1.56
SMPD3-209ENST00000567223 SCN7AQ01118 1682 aa24.76■■□□□ 1.55
SMPD3-209ENST00000567223 MCM10Q7L590 875 aa24.76■■□□□ 1.55
SMPD3-209ENST00000567223 ADCY9O60503 1353 aa24.76■■□□□ 1.55
SMPD3-209ENST00000567223 N4BP2Q86UW6 1770 aaPredicted RBP24.75■■□□□ 1.55
SMPD3-209ENST00000567223 BCL2L12Q9HB09 334 aa24.75■■□□□ 1.55
SMPD3-209ENST00000567223 DLG5Q8TDM6 1919 aa24.73■■□□□ 1.55
SMPD3-209ENST00000567223 KCNA3P22001 575 aa24.73■■□□□ 1.55
SMPD3-209ENST00000567223 CANXP27824 592 aaKnown RBP24.73■■□□□ 1.55
SMPD3-209ENST00000567223 MYBBP1AQ9BQG0 1328 aaKnown RBP24.72■■□□□ 1.55
SMPD3-209ENST00000567223 KCNQ3O43525 872 aa24.72■■□□□ 1.55
SMPD3-209ENST00000567223 SNRPA1P09661 255 aaKnown RBP24.72■■□□□ 1.55
SMPD3-209ENST00000567223 NFIXQ14938 502 aa24.72■■□□□ 1.55
SMPD3-209ENST00000567223 TAF7Q15545 349 aaPredicted RBP24.72■■□□□ 1.55
SMPD3-209ENST00000567223 A0A0G2JLW4 131 aa24.71■■□□□ 1.55
SMPD3-209ENST00000567223 DPEP1P16444 411 aa24.71■■□□□ 1.55
SMPD3-209ENST00000567223 DDX10Q13206 875 aaKnown RBP24.71■■□□□ 1.55
SMPD3-209ENST00000567223 NFE2L2Q16236 605 aa24.71■■□□□ 1.55
SMPD3-209ENST00000567223 PNISRQ8TF01 805 aaKnown RBP24.71■■□□□ 1.55
SMPD3-209ENST00000567223 ARFGEF1Q9Y6D6 1849 aa24.7■■□□□ 1.55
SMPD3-209ENST00000567223 RGL2O15211 777 aa24.7■■□□□ 1.54
SMPD3-209ENST00000567223 AFDNP55196 1824 aaKnown RBP24.7■■□□□ 1.54
SMPD3-209ENST00000567223 KDM3BQ7LBC6 1761 aa24.7■■□□□ 1.54
SMPD3-209ENST00000567223 DCTN1Q14203 1278 aa24.69■■□□□ 1.54
SMPD3-209ENST00000567223 MAPK8IP3Q9UPT6 1336 aa24.68■■□□□ 1.54
SMPD3-209ENST00000567223 PIM2Q9P1W9 311 aa24.68■■□□□ 1.54
SMPD3-209ENST00000567223 USP16Q9Y5T5 823 aa24.68■■□□□ 1.54
SMPD3-209ENST00000567223 BCORQ6W2J9 1755 aa24.67■■□□□ 1.54
SMPD3-209ENST00000567223 A1BGP04217 495 aa24.67■■□□□ 1.54
SMPD3-209ENST00000567223 LAMB4A4D0S4 1761 aa24.67■■□□□ 1.54
SMPD3-209ENST00000567223 SERPINB2P05120 415 aa24.66■■□□□ 1.54
SMPD3-209ENST00000567223 BCS1LQ9Y276 419 aa24.66■■□□□ 1.54
SMPD3-209ENST00000567223 DLEC1Q9Y238 1755 aa24.66■■□□□ 1.54
SMPD3-209ENST00000567223 ATP10DQ9P241 1426 aa24.66■■□□□ 1.54
SMPD3-209ENST00000567223 CLEC4GQ6UXB4 293 aa24.64■■□□□ 1.54
SMPD3-209ENST00000567223 NPM2Q86SE8 214 aaKnown RBP24.64■■□□□ 1.54
SMPD3-209ENST00000567223 CARMIL3Q8ND23 1372 aa24.64■■□□□ 1.53
SMPD3-209ENST00000567223 CAMTA2O94983 1202 aa24.63■■□□□ 1.53
SMPD3-209ENST00000567223 PDZRN3Q9UPQ7 1066 aa24.63■■□□□ 1.53
SMPD3-209ENST00000567223 PRAMEF22A3QJZ6 481 aa24.62■■□□□ 1.53
SMPD3-209ENST00000567223 DALRD3Q5D0E6 543 aaKnown RBP24.62■■□□□ 1.53
SMPD3-209ENST00000567223 BABAM1Q9NWV8 329 aa24.62■■□□□ 1.53
SMPD3-209ENST00000567223 WWC3Q9ULE0 1092 aa24.62■■□□□ 1.53
SMPD3-209ENST00000567223 TBC1D2BQ9UPU7 963 aa24.62■■□□□ 1.53
SMPD3-209ENST00000567223 TBC1D9BQ66K14 1250 aa24.61■■□□□ 1.53
SMPD3-209ENST00000567223 DZIP3Q86Y13 1208 aaKnown RBP24.61■■□□□ 1.53
SMPD3-209ENST00000567223 GIGYF1O75420 1035 aaPredicted RBP24.6■■□□□ 1.53
SMPD3-209ENST00000567223 C1QTNF8P60827 252 aa24.59■■□□□ 1.53
SMPD3-209ENST00000567223 EIF4A1P60842 406 aaKnown RBP24.59■■□□□ 1.53
SMPD3-209ENST00000567223 LMOD3Q0VAK6 560 aa24.59■■□□□ 1.53
SMPD3-209ENST00000567223 PRKRIP1Q9H875 184 aaPredicted RBP24.59■■□□□ 1.53
SMPD3-209ENST00000567223 NBPF26B4DH59 902 aa24.58■■□□□ 1.53
SMPD3-209ENST00000567223 CHRNA5P30532 468 aa24.58■■□□□ 1.53
SMPD3-209ENST00000567223 ZEB1P37275 1124 aaPredicted RBP24.58■■□□□ 1.53
SMPD3-209ENST00000567223 NBPF10Q6P3W6 841 aaKnown RBP24.58■■□□□ 1.53
SMPD3-209ENST00000567223 NBPF15Q8N660 670 aa24.58■■□□□ 1.53
SMPD3-209ENST00000567223 BRIP1Q9BX63 1249 aa24.58■■□□□ 1.53
SMPD3-209ENST00000567223 TMPOP42166 694 aaKnown RBP24.57■■□□□ 1.52
SMPD3-209ENST00000567223 SETDB2Q96T68 719 aa24.57■■□□□ 1.52
SMPD3-209ENST00000567223 ZNF652Q9Y2D9 606 aa24.57■■□□□ 1.52
SMPD3-209ENST00000567223 ZNF330Q9Y3S2 320 aaPredicted RBP24.57■■□□□ 1.52
SMPD3-209ENST00000567223 MIS18AQ9NYP9 233 aa24.56■■□□□ 1.52
SMPD3-209ENST00000567223 ERBB4Q15303 1308 aa24.56■■□□□ 1.52
SMPD3-209ENST00000567223 ANKRD31Q8N7Z5 1873 aa24.55■■□□□ 1.52
SMPD3-209ENST00000567223 RIPK4P57078 832 aa24.55■■□□□ 1.52
SMPD3-209ENST00000567223 PRR5LQ6MZQ0 368 aa24.55■■□□□ 1.52
SMPD3-209ENST00000567223 ARHGAP27Q6ZUM4 889 aa24.55■■□□□ 1.52
SMPD3-209ENST00000567223 GPBP1L1Q9HC44 474 aaPredicted RBP24.55■■□□□ 1.52
SMPD3-209ENST00000567223 PDE6BP35913 854 aa24.54■■□□□ 1.52
SMPD3-209ENST00000567223 BICDL1Q6ZP65 573 aa24.54■■□□□ 1.52
SMPD3-209ENST00000567223 THUMPD2Q9BTF0 503 aaKnown RBP24.54■■□□□ 1.52
SMPD3-209ENST00000567223 H0YIN7 160 aa24.53■■□□□ 1.52
SMPD3-209ENST00000567223 RUNDC1Q96C34 613 aa24.53■■□□□ 1.52
SMPD3-209ENST00000567223 TTLL6Q8N841 843 aa24.52■■□□□ 1.52
SMPD3-209ENST00000567223 CNBD1Q8NA66 436 aa24.52■■□□□ 1.52
SMPD3-209ENST00000567223 PIP4K2AP48426 406 aaPredicted RBP24.51■■□□□ 1.51
SMPD3-209ENST00000567223 WDR43Q15061 677 aaKnown RBP eCLIP24.51■■□□□ 1.51
SMPD3-209ENST00000567223 C2CD5Q86YS7 1000 aa24.51■■□□□ 1.51
SMPD3-209ENST00000567223 ERVV-1B6SEH8 477 aa24.5■■□□□ 1.51
SMPD3-209ENST00000567223 TSPYL4Q9UJ04 414 aa24.5■■□□□ 1.51
SMPD3-209ENST00000567223 ZC3H4Q9UPT8 1303 aaKnown RBP24.5■■□□□ 1.51
SMPD3-209ENST00000567223 COL11A2P13942 1736 aaPredicted RBP24.49■■□□□ 1.51
SMPD3-209ENST00000567223 ST5P78524 1137 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms