RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 PNMA8AQ86V59 439 aaPredicted RBP13.13□□□□□ -0.31
SMPD3-206ENST00000566009 USHBP1Q8N6Y0 703 aa13.13□□□□□ -0.31
SMPD3-206ENST00000566009 TLL2Q9Y6L7 1015 aa13.13□□□□□ -0.31
SMPD3-206ENST00000566009 TM4SF1P30408 202 aa13.12□□□□□ -0.31
SMPD3-206ENST00000566009 CST9Q5W186 159 aa13.12□□□□□ -0.31
SMPD3-206ENST00000566009 CIAPIN1Q6FI81 312 aa13.12□□□□□ -0.31
SMPD3-206ENST00000566009 ADAMTS7Q9UKP4 1686 aa13.12□□□□□ -0.31
SMPD3-206ENST00000566009 HOXC9P31274 260 aa13.11□□□□□ -0.31
SMPD3-206ENST00000566009 PPARGC1BQ86YN6 1023 aaKnown RBP13.11□□□□□ -0.31
SMPD3-206ENST00000566009 EVC2Q86UK5 1308 aa13.11□□□□□ -0.31
SMPD3-206ENST00000566009 C21orf2O43822 256 aa13.1□□□□□ -0.31
SMPD3-206ENST00000566009 C2CD5Q86YS7 1000 aa13.1□□□□□ -0.31
SMPD3-206ENST00000566009 SLC4A9Q96Q91 983 aa13.1□□□□□ -0.31
SMPD3-206ENST00000566009 ATG3Q9NT62 314 aa13.1□□□□□ -0.31
SMPD3-206ENST00000566009 TMOD3Q9NYL9 352 aa13.1□□□□□ -0.31
SMPD3-206ENST00000566009 MAP3K19Q56UN5 1328 aa13.1□□□□□ -0.31
SMPD3-206ENST00000566009 CNTNAP4Q9C0A0 1308 aa13.1□□□□□ -0.31
SMPD3-206ENST00000566009 USP42Q9H9J4 1324 aaKnown RBP13.1□□□□□ -0.31
SMPD3-206ENST00000566009 LTBP3Q9NS15 1303 aa13.1□□□□□ -0.31
SMPD3-206ENST00000566009 NKX1-1Q15270 411 aaPredicted RBP13.09□□□□□ -0.31
SMPD3-206ENST00000566009 SMG6Q86US8 1419 aaKnown RBP13.09□□□□□ -0.31
SMPD3-206ENST00000566009 TAOK3Q9H2K8 898 aa13.09□□□□□ -0.31
SMPD3-206ENST00000566009 HPS5Q9UPZ3 1129 aa13.09□□□□□ -0.31
SMPD3-206ENST00000566009 H0YIN7 160 aa13.08□□□□□ -0.32
SMPD3-206ENST00000566009 AMPHP49418 695 aa13.08□□□□□ -0.32
SMPD3-206ENST00000566009 SAPCD2Q86UD0 394 aa13.07□□□□□ -0.32
SMPD3-206ENST00000566009 FER1L6Q2WGJ9 1857 aa13.07□□□□□ -0.32
SMPD3-206ENST00000566009 DLEC1Q9Y238 1755 aa13.07□□□□□ -0.32
SMPD3-206ENST00000566009 KDRP35968 1356 aa13.07□□□□□ -0.32
SMPD3-206ENST00000566009 SBNO2Q9Y2G9 1366 aa13.07□□□□□ -0.32
SMPD3-206ENST00000566009 TRAF5O00463 557 aa13.06□□□□□ -0.32
SMPD3-206ENST00000566009 CTU1Q7Z7A3 348 aaKnown RBP13.06□□□□□ -0.32
SMPD3-206ENST00000566009 RBM42Q9BTD8 480 aaKnown RBP13.06□□□□□ -0.32
SMPD3-206ENST00000566009 RNF123Q5XPI4 1314 aa13.06□□□□□ -0.32
SMPD3-206ENST00000566009 ZNF622Q969S3 477 aaKnown RBP eCLIP13.05□□□□□ -0.32
SMPD3-206ENST00000566009 ZIC5Q96T25 663 aa13.05□□□□□ -0.32
SMPD3-206ENST00000566009 COLQQ9Y215 455 aaPredicted RBP13.05□□□□□ -0.32
SMPD3-206ENST00000566009 ZNF541Q9H0D2 1346 aa13.05□□□□□ -0.32
SMPD3-206ENST00000566009 MON2Q7Z3U7 1717 aa13.05□□□□□ -0.32
SMPD3-206ENST00000566009 FBLN1P23142 703 aa13.04□□□□□ -0.32
SMPD3-206ENST00000566009 HHIPL1Q96JK4 782 aa13.04□□□□□ -0.32
SMPD3-206ENST00000566009 MYH14Q7Z406 1995 aaKnown RBP13.02□□□□□ -0.32
SMPD3-206ENST00000566009 SERPINB2P05120 415 aa13.02□□□□□ -0.33
SMPD3-206ENST00000566009 MNX1P50219 401 aaPredicted RBP13.02□□□□□ -0.33
SMPD3-206ENST00000566009 NFIXQ14938 502 aa13.02□□□□□ -0.33
SMPD3-206ENST00000566009 NOGQ13253 232 aa13.01□□□□□ -0.33
SMPD3-206ENST00000566009 USPL1Q5W0Q7 1092 aa13.01□□□□□ -0.33
SMPD3-206ENST00000566009 SAGE1Q9NXZ1 904 aa13.01□□□□□ -0.33
SMPD3-206ENST00000566009 INSRP06213 1382 aa13.01□□□□□ -0.33
SMPD3-206ENST00000566009 TRPM7Q96QT4 1865 aa13.01□□□□□ -0.33
SMPD3-206ENST00000566009 CUL9Q8IWT3 2517 aa13.01□□□□□ -0.33
SMPD3-206ENST00000566009 AFDNP55196 1824 aaKnown RBP13□□□□□ -0.33
SMPD3-206ENST00000566009 COL5A3P25940 1745 aaPredicted RBP13□□□□□ -0.33
SMPD3-206ENST00000566009 CRKLP46109 303 aaKnown RBP13□□□□□ -0.33
SMPD3-206ENST00000566009 AKAP4Q5JQC9 854 aa13□□□□□ -0.33
SMPD3-206ENST00000566009 BICDL1Q6ZP65 573 aa13□□□□□ -0.33
SMPD3-206ENST00000566009 CARMIL3Q8ND23 1372 aa12.99□□□□□ -0.33
SMPD3-206ENST00000566009 A0A0C4DFX4 3053 aa12.99□□□□□ -0.33
SMPD3-206ENST00000566009 ZPR1O75312 459 aa12.99□□□□□ -0.33
SMPD3-206ENST00000566009 CELF2O95319 508 aaKnown RBP12.99□□□□□ -0.33
SMPD3-206ENST00000566009 PKN2Q16513 984 aaKnown RBP12.99□□□□□ -0.33
SMPD3-206ENST00000566009 SZT2Q5T011 3432 aa12.99□□□□□ -0.33
SMPD3-206ENST00000566009 TRPA1O75762 1119 aa12.98□□□□□ -0.33
SMPD3-206ENST00000566009 RNF186Q9NXI6 227 aa12.98□□□□□ -0.33
SMPD3-206ENST00000566009 NRXN2Q9P2S2 1712 aa12.98□□□□□ -0.33
SMPD3-206ENST00000566009 ZNF831Q5JPB2 1677 aa12.98□□□□□ -0.33
SMPD3-206ENST00000566009 GPC2Q8N158 579 aa12.97□□□□□ -0.33
SMPD3-206ENST00000566009 SPG7Q9UQ90 795 aa12.97□□□□□ -0.33
SMPD3-206ENST00000566009 SOGA3Q5TF21 947 aa12.96□□□□□ -0.33
SMPD3-206ENST00000566009 HDGFL2Q7Z4V5 671 aaPredicted RBP12.96□□□□□ -0.33
SMPD3-206ENST00000566009 PDZRN3Q9UPQ7 1066 aa12.96□□□□□ -0.33
SMPD3-206ENST00000566009 EDC4Q6P2E9 1401 aaKnown RBP12.96□□□□□ -0.34
SMPD3-206ENST00000566009 FZD9O00144 591 aa12.95□□□□□ -0.34
SMPD3-206ENST00000566009 PDE6BP35913 854 aa12.95□□□□□ -0.34
SMPD3-206ENST00000566009 RRS1Q15050 365 aaKnown RBP12.94□□□□□ -0.34
SMPD3-206ENST00000566009 INTS5Q6P9B9 1019 aaKnown RBP12.94□□□□□ -0.34
SMPD3-206ENST00000566009 SYNE4Q8N205 404 aa12.94□□□□□ -0.34
SMPD3-206ENST00000566009 CNKSR1Q969H4 720 aa12.94□□□□□ -0.34
SMPD3-206ENST00000566009 ZNF277Q9NRM2 450 aaPredicted RBP12.94□□□□□ -0.34
SMPD3-206ENST00000566009 RTL1A6NKG5 1358 aa12.94□□□□□ -0.34
SMPD3-206ENST00000566009 PHKG2P15735 406 aa12.93□□□□□ -0.34
SMPD3-206ENST00000566009 LMOD1P29536 600 aaPredicted RBP12.93□□□□□ -0.34
SMPD3-206ENST00000566009 EPS15P42566 896 aa12.93□□□□□ -0.34
SMPD3-206ENST00000566009 PRPF40BQ6NWY9 871 aaKnown RBP12.93□□□□□ -0.34
SMPD3-206ENST00000566009 USP50Q70EL3 339 aaPredicted RBP12.93□□□□□ -0.34
SMPD3-206ENST00000566009 IFNL2Q8IZJ0 200 aa12.93□□□□□ -0.34
SMPD3-206ENST00000566009 TMC1Q8TDI8 760 aa12.93□□□□□ -0.34
SMPD3-206ENST00000566009 COG3Q96JB2 828 aa12.93□□□□□ -0.34
SMPD3-206ENST00000566009 BRIP1Q9BX63 1249 aa12.93□□□□□ -0.34
SMPD3-206ENST00000566009 BCL2L12Q9HB09 334 aa12.93□□□□□ -0.34
SMPD3-206ENST00000566009 PTCD1O75127 700 aaKnown RBP12.92□□□□□ -0.34
SMPD3-206ENST00000566009 KIF23Q02241 960 aaPredicted RBP12.92□□□□□ -0.34
SMPD3-206ENST00000566009 HSP90AB2PQ58FF8 381 aa12.92□□□□□ -0.34
SMPD3-206ENST00000566009 SLC12A5Q9H2X9 1139 aa12.92□□□□□ -0.34
SMPD3-206ENST00000566009 ZNF408Q9H9D4 720 aa12.92□□□□□ -0.34
SMPD3-206ENST00000566009 NARFQ9UHQ1 456 aa12.92□□□□□ -0.34
SMPD3-206ENST00000566009 SLX4Q8IY92 1834 aa12.92□□□□□ -0.34
SMPD3-206ENST00000566009 MKI67P46013 3256 aaKnown RBP12.91□□□□□ -0.34
SMPD3-206ENST00000566009 FAM155AB1AL88 458 aaPredicted RBP12.91□□□□□ -0.34
SMPD3-206ENST00000566009 FKBP4Q02790 459 aaKnown RBP eCLIP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms