RNA–Protein interactions for RNA: ENST00000564664.5

GTF3C1-204, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 933 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-204ENST00000564664 PHACTR3Q96KR7 559 aa16.28■□□□□ 0.2
GTF3C1-204ENST00000564664 GPBP1L1Q9HC44 474 aaPredicted RBP16.28■□□□□ 0.2
GTF3C1-204ENST00000564664 ATP10DQ9P241 1426 aa16.28■□□□□ 0.2
GTF3C1-204ENST00000564664 ADCY9O60503 1353 aa16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 CEMIPQ8WUJ3 1361 aa16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 POLRMTO00411 1230 aaKnown RBP16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 HTATSF1O43719 755 aaKnown RBP16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 KCNA3P22001 575 aa16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 EIF5P55010 431 aaKnown RBP16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 DDR1Q08345 913 aa16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 FMNL2Q96PY5 1086 aa16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 ZBTB1Q9Y2K1 713 aa16.27■□□□□ 0.2
GTF3C1-204ENST00000564664 VIRMAQ69YN4 1812 aaKnown RBP16.26■□□□□ 0.19
GTF3C1-204ENST00000564664 RTF1Q92541 710 aaKnown RBP16.26■□□□□ 0.19
GTF3C1-204ENST00000564664 ZNF496Q96IT1 587 aaPredicted RBP16.26■□□□□ 0.19
GTF3C1-204ENST00000564664 COL15A1P39059 1388 aa16.26■□□□□ 0.19
GTF3C1-204ENST00000564664 HEG1Q9ULI3 1381 aa16.26■□□□□ 0.19
GTF3C1-204ENST00000564664 BTBD11A6QL63 1104 aa16.25■□□□□ 0.19
GTF3C1-204ENST00000564664 CANXP27824 592 aaKnown RBP16.25■□□□□ 0.19
GTF3C1-204ENST00000564664 DALRD3Q5D0E6 543 aaKnown RBP16.25■□□□□ 0.19
GTF3C1-204ENST00000564664 ARHGAP27Q6ZUM4 889 aa16.25■□□□□ 0.19
GTF3C1-204ENST00000564664 WWC3Q9ULE0 1092 aa16.25■□□□□ 0.19
GTF3C1-204ENST00000564664 IL6STP40189 918 aaPredicted RBP16.24■□□□□ 0.19
GTF3C1-204ENST00000564664 NFIXQ14938 502 aa16.24■□□□□ 0.19
GTF3C1-204ENST00000564664 NPM2Q86SE8 214 aaKnown RBP16.24■□□□□ 0.19
GTF3C1-204ENST00000564664 UBR2Q8IWV8 1755 aa16.23■□□□□ 0.19
GTF3C1-204ENST00000564664 SENP3-EIF4A1A0A087X0R7 540 aa16.23■□□□□ 0.19
GTF3C1-204ENST00000564664 NEFMP07197 916 aa16.23■□□□□ 0.19
GTF3C1-204ENST00000564664 PDZRN3Q9UPQ7 1066 aa16.23■□□□□ 0.19
GTF3C1-204ENST00000564664 N4BP2Q86UW6 1770 aaPredicted RBP16.23■□□□□ 0.19
GTF3C1-204ENST00000564664 KIAA1551Q9HCM1 1747 aa16.22■□□□□ 0.19
GTF3C1-204ENST00000564664 SERPINB2P05120 415 aa16.22■□□□□ 0.19
GTF3C1-204ENST00000564664 PNNQ9H307 717 aaKnown RBP16.22■□□□□ 0.19
GTF3C1-204ENST00000564664 BCL2L12Q9HB09 334 aa16.22■□□□□ 0.19
GTF3C1-204ENST00000564664 SNRPA1P09661 255 aaKnown RBP16.2■□□□□ 0.18
GTF3C1-204ENST00000564664 SIPA1L3O60292 1781 aaPredicted RBP16.19■□□□□ 0.18
GTF3C1-204ENST00000564664 TAF7Q15545 349 aaPredicted RBP16.19■□□□□ 0.18
GTF3C1-204ENST00000564664 BRCA1P38398 1863 aaKnown RBP16.18■□□□□ 0.18
GTF3C1-204ENST00000564664 RGL2O15211 777 aa16.18■□□□□ 0.18
GTF3C1-204ENST00000564664 A1BGP04217 495 aa16.18■□□□□ 0.18
GTF3C1-204ENST00000564664 CHRNA5P30532 468 aa16.18■□□□□ 0.18
GTF3C1-204ENST00000564664 MCM10Q7L590 875 aa16.18■□□□□ 0.18
GTF3C1-204ENST00000564664 ZNF526Q8TF50 670 aaPredicted RBP16.18■□□□□ 0.18
GTF3C1-204ENST00000564664 ARFGEF1Q9Y6D6 1849 aa16.17■□□□□ 0.18
GTF3C1-204ENST00000564664 H0YIN7 160 aa16.17■□□□□ 0.18
GTF3C1-204ENST00000564664 KCNQ3O43525 872 aa16.17■□□□□ 0.18
GTF3C1-204ENST00000564664 CLEC4GQ6UXB4 293 aa16.17■□□□□ 0.18
GTF3C1-204ENST00000564664 TTLL6Q8N841 843 aa16.17■□□□□ 0.18
GTF3C1-204ENST00000564664 PNISRQ8TF01 805 aaKnown RBP16.17■□□□□ 0.18
GTF3C1-204ENST00000564664 BRIP1Q9BX63 1249 aa16.17■□□□□ 0.18
GTF3C1-204ENST00000564664 TBC1D2BQ9UPU7 963 aa16.17■□□□□ 0.18
GTF3C1-204ENST00000564664 PDE6BP35913 854 aa16.16■□□□□ 0.18
GTF3C1-204ENST00000564664 C9orf131Q5VYM1 1079 aa16.16■□□□□ 0.18
GTF3C1-204ENST00000564664 SETDB2Q96T68 719 aa16.16■□□□□ 0.18
GTF3C1-204ENST00000564664 USP16Q9Y5T5 823 aa16.16■□□□□ 0.18
GTF3C1-204ENST00000564664 KIF3CO14782 793 aa16.15■□□□□ 0.18
GTF3C1-204ENST00000564664 RALBP1Q15311 655 aa16.15■□□□□ 0.18
GTF3C1-204ENST00000564664 TBC1D9BQ66K14 1250 aa16.15■□□□□ 0.18
GTF3C1-204ENST00000564664 BICDL1Q6ZP65 573 aa16.15■□□□□ 0.18
GTF3C1-204ENST00000564664 C2CD5Q86YS7 1000 aa16.15■□□□□ 0.18
GTF3C1-204ENST00000564664 NRXN2Q9P2S2 1712 aa16.15■□□□□ 0.18
GTF3C1-204ENST00000564664 CARMIL3Q8ND23 1372 aa16.14■□□□□ 0.17
GTF3C1-204ENST00000564664 CAMTA2O94983 1202 aa16.14■□□□□ 0.17
GTF3C1-204ENST00000564664 DZIP3Q86Y13 1208 aaKnown RBP16.14■□□□□ 0.17
GTF3C1-204ENST00000564664 PLEKHF1Q96S99 279 aa16.14■□□□□ 0.17
GTF3C1-204ENST00000564664 ZNF330Q9Y3S2 320 aaPredicted RBP16.14■□□□□ 0.17
GTF3C1-204ENST00000564664 ZC3H4Q9UPT8 1303 aaKnown RBP16.14■□□□□ 0.17
GTF3C1-204ENST00000564664 AFDNP55196 1824 aaKnown RBP16.13■□□□□ 0.17
GTF3C1-204ENST00000564664 HSPA6P17066 643 aa16.13■□□□□ 0.17
GTF3C1-204ENST00000564664 DCTN1Q14203 1278 aa16.13■□□□□ 0.17
GTF3C1-204ENST00000564664 ZNF652Q9Y2D9 606 aa16.13■□□□□ 0.17
GTF3C1-204ENST00000564664 TOMM70O94826 608 aa16.12■□□□□ 0.17
GTF3C1-204ENST00000564664 NFE2L2Q16236 605 aa16.12■□□□□ 0.17
GTF3C1-204ENST00000564664 RNF181Q9P0P0 153 aa16.12■□□□□ 0.17
GTF3C1-204ENST00000564664 KDM2BQ8NHM5 1336 aa16.12■□□□□ 0.17
GTF3C1-204ENST00000564664 PRR5LQ6MZQ0 368 aa16.11■□□□□ 0.17
GTF3C1-204ENST00000564664 NPHP1O15259 732 aa16.1■□□□□ 0.17
GTF3C1-204ENST00000564664 LMNB1P20700 586 aa16.1■□□□□ 0.17
GTF3C1-204ENST00000564664 ST5P78524 1137 aa16.1■□□□□ 0.17
GTF3C1-204ENST00000564664 CNBD1Q8NA66 436 aa16.1■□□□□ 0.17
GTF3C1-204ENST00000564664 MAPK8IP3Q9UPT6 1336 aa16.1■□□□□ 0.17
GTF3C1-204ENST00000564664 PRAMEF22A3QJZ6 481 aa16.09■□□□□ 0.17
GTF3C1-204ENST00000564664 TPTE2Q6XPS3 522 aa16.09■□□□□ 0.17
GTF3C1-204ENST00000564664 CNKSR1Q969H4 720 aa16.09■□□□□ 0.17
GTF3C1-204ENST00000564664 ZNF622Q969S3 477 aaKnown RBP eCLIP16.09■□□□□ 0.172e-7■■■■□ 20.4
GTF3C1-204ENST00000564664 NBPF26B4DH59 902 aa16.08■□□□□ 0.16
GTF3C1-204ENST00000564664 STYK1Q6J9G0 422 aa16.08■□□□□ 0.16
GTF3C1-204ENST00000564664 NBPF10Q6P3W6 841 aaKnown RBP16.08■□□□□ 0.16
GTF3C1-204ENST00000564664 C16orf71Q8IYS4 520 aaPredicted RBP16.08■□□□□ 0.16
GTF3C1-204ENST00000564664 NBPF15Q8N660 670 aa16.08■□□□□ 0.16
GTF3C1-204ENST00000564664 BABAM1Q9NWV8 329 aa16.08■□□□□ 0.16
GTF3C1-204ENST00000564664 SOGA3Q5TF21 947 aa16.07■□□□□ 0.16
GTF3C1-204ENST00000564664 NBPF5PQ86XG9 351 aaPredicted RBP16.07■□□□□ 0.16
GTF3C1-204ENST00000564664 RBM46Q8TBY0 533 aaKnown RBP16.07■□□□□ 0.16
GTF3C1-204ENST00000564664 MASTLQ96GX5 879 aa16.07■□□□□ 0.16
GTF3C1-204ENST00000564664 NMRK2Q9NPI5 230 aa16.07■□□□□ 0.16
GTF3C1-204ENST00000564664 MIS18AQ9NYP9 233 aa16.07■□□□□ 0.16
GTF3C1-204ENST00000564664 SCN7AQ01118 1682 aa16.07■□□□□ 0.16
GTF3C1-204ENST00000564664 SBF1O95248 1867 aa16.06■□□□□ 0.16
GTF3C1-204ENST00000564664 DLEC1Q9Y238 1755 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms