RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 INTS5Q6P9B9 1019 aaKnown RBP10.09□□□□□ -0.79
VPS4A-203ENST00000564399 MKRN1Q9UHC7 482 aaKnown RBP10.09□□□□□ -0.79
VPS4A-203ENST00000564399 TIAM2Q8IVF5 1701 aa10.09□□□□□ -0.79
VPS4A-203ENST00000564399 TJP1Q07157 1748 aa10.08□□□□□ -0.8
VPS4A-203ENST00000564399 NFIXQ14938 502 aa10.08□□□□□ -0.8
VPS4A-203ENST00000564399 C2CD5Q86YS7 1000 aa10.08□□□□□ -0.8
VPS4A-203ENST00000564399 DNAJC10Q8IXB1 793 aa10.08□□□□□ -0.8
VPS4A-203ENST00000564399 POLR3GLQ9BT43 218 aa10.08□□□□□ -0.8
VPS4A-203ENST00000564399 DLEC1Q9Y238 1755 aa10.07□□□□□ -0.8
VPS4A-203ENST00000564399 POTECB2RU33 542 aa10.07□□□□□ -0.8
VPS4A-203ENST00000564399 H0YIN7 160 aa10.07□□□□□ -0.8
VPS4A-203ENST00000564399 NFKBIEO00221 500 aa10.07□□□□□ -0.8
VPS4A-203ENST00000564399 SERPINB2P05120 415 aa10.07□□□□□ -0.8
VPS4A-203ENST00000564399 CHADLQ6NUI6 762 aa10.07□□□□□ -0.8
VPS4A-203ENST00000564399 CREBZFQ9NS37 354 aa10.07□□□□□ -0.8
VPS4A-203ENST00000564399 ZNF219Q9P2Y4 722 aaPredicted RBP10.07□□□□□ -0.8
VPS4A-203ENST00000564399 NARFQ9UHQ1 456 aa10.07□□□□□ -0.8
VPS4A-203ENST00000564399 DICER1Q9UPY3 1922 aaKnown RBP10.07□□□□□ -0.8
VPS4A-203ENST00000564399 FOXN1O15353 648 aa10.06□□□□□ -0.8
VPS4A-203ENST00000564399 ERFEQ4G0M1 354 aa10.06□□□□□ -0.8
VPS4A-203ENST00000564399 BICDL1Q6ZP65 573 aa10.06□□□□□ -0.8
VPS4A-203ENST00000564399 AEBP1Q8IUX7 1158 aa10.06□□□□□ -0.8
VPS4A-203ENST00000564399 ZNF622Q969S3 477 aaKnown RBP eCLIP10.06□□□□□ -0.88e-6■■□□□ 12.8
VPS4A-203ENST00000564399 PCDH10Q9P2E7 1040 aa10.06□□□□□ -0.8
VPS4A-203ENST00000564399 SCN11AQ9UI33 1791 aa10.06□□□□□ -0.8
VPS4A-203ENST00000564399 SOS1Q07889 1333 aaPredicted RBP10.06□□□□□ -0.8
VPS4A-203ENST00000564399 ADAMTS7Q9UKP4 1686 aa10.06□□□□□ -0.8
VPS4A-203ENST00000564399 AIDAQ96BJ3 306 aa10.05□□□□□ -0.8
VPS4A-203ENST00000564399 COL15A1P39059 1388 aa10.04□□□□□ -0.8
VPS4A-203ENST00000564399 C21orf2O43822 256 aa10.04□□□□□ -0.8
VPS4A-203ENST00000564399 CYP19A1P11511 503 aaPredicted RBP10.04□□□□□ -0.8
VPS4A-203ENST00000564399 SLC39A6Q13433 755 aa10.04□□□□□ -0.8
VPS4A-203ENST00000564399 SULT6B1Q6IMI4 303 aa10.04□□□□□ -0.8
VPS4A-203ENST00000564399 PRDM10Q9NQV6 1147 aa10.04□□□□□ -0.8
VPS4A-203ENST00000564399 ZBTB1Q9Y2K1 713 aa10.04□□□□□ -0.8
VPS4A-203ENST00000564399 NRXN2Q9P2S2 1712 aa10.04□□□□□ -0.8
VPS4A-203ENST00000564399 DDNO94850 711 aaPredicted RBP10.03□□□□□ -0.8
VPS4A-203ENST00000564399 POTEIP0CG38 1075 aa10.03□□□□□ -0.8
VPS4A-203ENST00000564399 POTEJP0CG39 1038 aa10.03□□□□□ -0.8
VPS4A-203ENST00000564399 CANXP27824 592 aaKnown RBP10.03□□□□□ -0.8
VPS4A-203ENST00000564399 CTCFP49711 727 aaPredicted RBP10.03□□□□□ -0.8
VPS4A-203ENST00000564399 FER1L6Q2WGJ9 1857 aa10.03□□□□□ -0.8
VPS4A-203ENST00000564399 SLC52A2Q9HAB3 445 aa10.03□□□□□ -0.8
VPS4A-203ENST00000564399 BCL2L12Q9HB09 334 aa10.03□□□□□ -0.8
VPS4A-203ENST00000564399 VIRMAQ69YN4 1812 aaKnown RBP10.03□□□□□ -0.8
VPS4A-203ENST00000564399 CNTNAP1P78357 1384 aa10.02□□□□□ -0.8
VPS4A-203ENST00000564399 CARMIL3Q8ND23 1372 aa10.02□□□□□ -0.8
VPS4A-203ENST00000564399 PDE6BP35913 854 aa10.02□□□□□ -0.81
VPS4A-203ENST00000564399 AKAP4Q5JQC9 854 aa10.02□□□□□ -0.81
VPS4A-203ENST00000564399 TAOK3Q9H2K8 898 aa10.02□□□□□ -0.81
VPS4A-203ENST00000564399 LGR6Q9HBX8 967 aa10.02□□□□□ -0.81
VPS4A-203ENST00000564399 PDZRN3Q9UPQ7 1066 aa10.02□□□□□ -0.81
VPS4A-203ENST00000564399 CACNA1SQ13698 1873 aa10.02□□□□□ -0.81
VPS4A-203ENST00000564399 IQCA1LA6NCM1 817 aa10.01□□□□□ -0.81
VPS4A-203ENST00000564399 NPHP1O15259 732 aa10.01□□□□□ -0.81
VPS4A-203ENST00000564399 VEGFBP49765 207 aa10.01□□□□□ -0.81
VPS4A-203ENST00000564399 LBX1P52954 281 aa10.01□□□□□ -0.81
VPS4A-203ENST00000564399 MORC1Q86VD1 984 aa10.01□□□□□ -0.81
VPS4A-203ENST00000564399 CCDC24Q8N4L8 307 aa10.01□□□□□ -0.81
VPS4A-203ENST00000564399 BRIP1Q9BX63 1249 aa10.01□□□□□ -0.81
VPS4A-203ENST00000564399 ZNF330Q9Y3S2 320 aaPredicted RBP10.01□□□□□ -0.81
VPS4A-203ENST00000564399 ANKRD31Q8N7Z5 1873 aa10.01□□□□□ -0.81
VPS4A-203ENST00000564399 A0A087WZG4 1122 aa10□□□□□ -0.81
VPS4A-203ENST00000564399 TMEM88BA6NKF7 163 aa10□□□□□ -0.81
VPS4A-203ENST00000564399 RNMTO43148 476 aaKnown RBP10□□□□□ -0.81
VPS4A-203ENST00000564399 EAPPQ56P03 285 aaPredicted RBP10□□□□□ -0.81
VPS4A-203ENST00000564399 TBC1D9BQ66K14 1250 aa10□□□□□ -0.81
VPS4A-203ENST00000564399 LDHDQ86WU2 507 aa10□□□□□ -0.81
VPS4A-203ENST00000564399 SLX4Q8IY92 1834 aa10□□□□□ -0.81
VPS4A-203ENST00000564399 SCN4AP35499 1836 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 STARD3NLO95772 234 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 FAM161AQ3B820 660 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 PRR5LQ6MZQ0 368 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 NPM2Q86SE8 214 aaKnown RBP9.99□□□□□ -0.81
VPS4A-203ENST00000564399 VSIG10Q8N0Z9 540 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 CNKSR1Q969H4 720 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 PANK3Q9H999 370 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 WBP1LQ9NX94 342 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 CLEC11AQ9Y240 323 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 PASKQ96RG2 1323 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 LTBP3Q9NS15 1303 aa9.99□□□□□ -0.81
VPS4A-203ENST00000564399 EIF5P55010 431 aaKnown RBP9.98□□□□□ -0.81
VPS4A-203ENST00000564399 SOGA3Q5TF21 947 aa9.98□□□□□ -0.81
VPS4A-203ENST00000564399 TTC5Q8N0Z6 440 aa9.98□□□□□ -0.81
VPS4A-203ENST00000564399 ABHD8Q96I13 439 aa9.98□□□□□ -0.81
VPS4A-203ENST00000564399 TAF1DQ9H5J8 278 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-203ENST00000564399 TBC1D2BQ9UPU7 963 aa9.98□□□□□ -0.81
VPS4A-203ENST00000564399 COL11A2P13942 1736 aaPredicted RBP9.98□□□□□ -0.81
VPS4A-203ENST00000564399 IL13P35225 146 aa9.97□□□□□ -0.81
VPS4A-203ENST00000564399 ST5P78524 1137 aa9.97□□□□□ -0.81
VPS4A-203ENST00000564399 DEFB115Q30KQ5 88 aa9.97□□□□□ -0.81
VPS4A-203ENST00000564399 STYK1Q6J9G0 422 aa9.97□□□□□ -0.81
VPS4A-203ENST00000564399 PRPF40BQ6NWY9 871 aaKnown RBP9.97□□□□□ -0.81
VPS4A-203ENST00000564399 CNBD1Q8NA66 436 aa9.97□□□□□ -0.81
VPS4A-203ENST00000564399 SETDB2Q96T68 719 aa9.97□□□□□ -0.81
VPS4A-203ENST00000564399 ITGBL1O95965 494 aaPredicted RBP9.96□□□□□ -0.82
VPS4A-203ENST00000564399 HMOX1P09601 288 aa9.96□□□□□ -0.82
VPS4A-203ENST00000564399 HSPA8P11142 646 aaKnown RBP9.96□□□□□ -0.82
VPS4A-203ENST00000564399 MASTLQ96GX5 879 aa9.96□□□□□ -0.82
VPS4A-203ENST00000564399 L3MBTL3Q96JM7 780 aaPredicted RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms