RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 KIF13BQ9NQT8 1826 aa22.75■■□□□ 1.23
CLN3-211ENST00000564091 COL15A1P39059 1388 aa22.75■■□□□ 1.23
CLN3-211ENST00000564091 TJP1Q07157 1748 aa22.74■■□□□ 1.23
CLN3-211ENST00000564091 TTC5Q8N0Z6 440 aa22.74■■□□□ 1.23
CLN3-211ENST00000564091 IL17REQ8NFR9 667 aa22.74■■□□□ 1.23
CLN3-211ENST00000564091 KCPQ6ZWJ8 1503 aa22.73■■□□□ 1.23
CLN3-211ENST00000564091 TOMM70O94826 608 aa22.72■■□□□ 1.23
CLN3-211ENST00000564091 SERPINB2P05120 415 aa22.72■■□□□ 1.23
CLN3-211ENST00000564091 RNF181Q9P0P0 153 aa22.72■■□□□ 1.23
CLN3-211ENST00000564091 GNAT3A8MTJ3 354 aa22.71■■□□□ 1.23
CLN3-211ENST00000564091 STARD3NLO95772 234 aa22.71■■□□□ 1.23
CLN3-211ENST00000564091 TEFQ10587 303 aa22.71■■□□□ 1.23
CLN3-211ENST00000564091 GAS2L2Q8NHY3 880 aa22.71■■□□□ 1.23
CLN3-211ENST00000564091 ZNF496Q96IT1 587 aaPredicted RBP22.71■■□□□ 1.23
CLN3-211ENST00000564091 NPC1L1Q9UHC9 1359 aa22.71■■□□□ 1.23
CLN3-211ENST00000564091 BICDL1Q6ZP65 573 aa22.7■■□□□ 1.22
CLN3-211ENST00000564091 SCN11AQ9UI33 1791 aa22.7■■□□□ 1.22
CLN3-211ENST00000564091 COL3A1P02461 1466 aaPredicted RBP22.69■■□□□ 1.22
CLN3-211ENST00000564091 EIF5P55010 431 aaKnown RBP22.69■■□□□ 1.22
CLN3-211ENST00000564091 ZNF790Q6PG37 636 aa22.69■■□□□ 1.22
CLN3-211ENST00000564091 PHACTR3Q96KR7 559 aa22.67■■□□□ 1.22
CLN3-211ENST00000564091 ZNF330Q9Y3S2 320 aaPredicted RBP22.67■■□□□ 1.22
CLN3-211ENST00000564091 ADAMTS7Q9UKP4 1686 aa22.67■■□□□ 1.22
CLN3-211ENST00000564091 APLP1P51693 650 aa22.66■■□□□ 1.22
CLN3-211ENST00000564091 RASSF7Q02833 373 aa22.66■■□□□ 1.22
CLN3-211ENST00000564091 C2CD5Q86YS7 1000 aa22.66■■□□□ 1.22
CLN3-211ENST00000564091 HEG1Q9ULI3 1381 aa22.65■■□□□ 1.22
CLN3-211ENST00000564091 A0A087WZG4 1122 aa22.65■■□□□ 1.22
CLN3-211ENST00000564091 KCNQ3O43525 872 aa22.65■■□□□ 1.22
CLN3-211ENST00000564091 PRKAR2BP31323 418 aa22.65■■□□□ 1.22
CLN3-211ENST00000564091 TBC1D2BQ9UPU7 963 aa22.65■■□□□ 1.22
CLN3-211ENST00000564091 TBC1D9BQ66K14 1250 aa22.64■■□□□ 1.21
CLN3-211ENST00000564091 C16orf71Q8IYS4 520 aaPredicted RBP22.64■■□□□ 1.21
CLN3-211ENST00000564091 TTLL6Q8N841 843 aa22.64■■□□□ 1.21
CLN3-211ENST00000564091 TEX13AQ9BXU3 409 aaPredicted RBP22.64■■□□□ 1.21
CLN3-211ENST00000564091 RRAGCQ9HB90 399 aa22.64■■□□□ 1.21
CLN3-211ENST00000564091 CARMIL3Q8ND23 1372 aa22.63■■□□□ 1.21
CLN3-211ENST00000564091 KDM2BQ8NHM5 1336 aa22.63■■□□□ 1.21
CLN3-211ENST00000564091 A1BGP04217 495 aa22.63■■□□□ 1.21
CLN3-211ENST00000564091 RBM46Q8TBY0 533 aaKnown RBP22.63■■□□□ 1.21
CLN3-211ENST00000564091 FMNL2Q96PY5 1086 aa22.63■■□□□ 1.21
CLN3-211ENST00000564091 RSPH6AQ9H0K4 717 aa22.63■■□□□ 1.21
CLN3-211ENST00000564091 H0YIN7 160 aa22.62■■□□□ 1.21
CLN3-211ENST00000564091 PRELPP51888 382 aa22.62■■□□□ 1.21
CLN3-211ENST00000564091 IFFO2Q5TF58 517 aa22.62■■□□□ 1.21
CLN3-211ENST00000564091 CCDC24Q8N4L8 307 aa22.62■■□□□ 1.21
CLN3-211ENST00000564091 CFAP53Q96M91 514 aa22.62■■□□□ 1.21
CLN3-211ENST00000564091 BTBD11A6QL63 1104 aa22.61■■□□□ 1.21
CLN3-211ENST00000564091 IL6STP40189 918 aaPredicted RBP22.61■■□□□ 1.21
CLN3-211ENST00000564091 DNAJC5GQ8N7S2 189 aa22.6■■□□□ 1.21
CLN3-211ENST00000564091 CEMIPQ8WUJ3 1361 aa22.6■■□□□ 1.21
CLN3-211ENST00000564091 BRCA1P38398 1863 aaKnown RBP22.6■■□□□ 1.21
CLN3-211ENST00000564091 LMNB1P20700 586 aa22.59■■□□□ 1.21
CLN3-211ENST00000564091 NUDCQ9Y266 331 aa22.59■■□□□ 1.21
CLN3-211ENST00000564091 U2AF1L5P0DN76 240 aaPredicted RBP22.58■■□□□ 1.21
CLN3-211ENST00000564091 HTRA3P83110 453 aa22.58■■□□□ 1.21
CLN3-211ENST00000564091 U2AF1Q01081 240 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-211ENST00000564091 PRR5LQ6MZQ0 368 aa22.58■■□□□ 1.21
CLN3-211ENST00000564091 ZNF622Q969S3 477 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLN3-211ENST00000564091 PPP2R1AP30153 589 aa22.57■■□□□ 1.2
CLN3-211ENST00000564091 PIP4K2AP48426 406 aaPredicted RBP22.57■■□□□ 1.2
CLN3-211ENST00000564091 NPM2Q86SE8 214 aaKnown RBP22.57■■□□□ 1.2
CLN3-211ENST00000564091 BRIP1Q9BX63 1249 aa22.57■■□□□ 1.2
CLN3-211ENST00000564091 ZNF219Q9P2Y4 722 aaPredicted RBP22.57■■□□□ 1.2
CLN3-211ENST00000564091 USP16Q9Y5T5 823 aa22.57■■□□□ 1.2
CLN3-211ENST00000564091 PRAMEF22A3QJZ6 481 aa22.56■■□□□ 1.2
CLN3-211ENST00000564091 NFKBIEO00221 500 aa22.56■■□□□ 1.2
CLN3-211ENST00000564091 CAMTA2O94983 1202 aa22.56■■□□□ 1.2
CLN3-211ENST00000564091 FSTL1Q12841 308 aa22.56■■□□□ 1.2
CLN3-211ENST00000564091 MCM10Q7L590 875 aa22.56■■□□□ 1.2
CLN3-211ENST00000564091 SETDB2Q96T68 719 aa22.55■■□□□ 1.2
CLN3-211ENST00000564091 C21orf2O43822 256 aa22.54■■□□□ 1.2
CLN3-211ENST00000564091 PDE6BP35913 854 aa22.54■■□□□ 1.2
CLN3-211ENST00000564091 DCTN1Q14203 1278 aa22.54■■□□□ 1.2
CLN3-211ENST00000564091 DZIP3Q86Y13 1208 aaKnown RBP22.54■■□□□ 1.2
CLN3-211ENST00000564091 RTF1Q92541 710 aaKnown RBP22.54■■□□□ 1.2
CLN3-211ENST00000564091 ARFGEF1Q9Y6D6 1849 aa22.54■■□□□ 1.2
CLN3-211ENST00000564091 ZC3H4Q9UPT8 1303 aaKnown RBP22.53■■□□□ 1.2
CLN3-211ENST00000564091 GLTPD2A6NH11 291 aa22.52■■□□□ 1.2
CLN3-211ENST00000564091 NPHP1O15259 732 aa22.52■■□□□ 1.2
CLN3-211ENST00000564091 CNBD1Q8NA66 436 aa22.52■■□□□ 1.2
CLN3-211ENST00000564091 PDZRN3Q9UPQ7 1066 aa22.52■■□□□ 1.2
CLN3-211ENST00000564091 UBR2Q8IWV8 1755 aa22.52■■□□□ 1.2
CLN3-211ENST00000564091 NRXN2Q9P2S2 1712 aa22.51■■□□□ 1.19
CLN3-211ENST00000564091 SNRPA1P09661 255 aaKnown RBP22.5■■□□□ 1.19
CLN3-211ENST00000564091 SMC1BQ8NDV3 1235 aa22.5■■□□□ 1.19
CLN3-211ENST00000564091 VEGFAP15692 232 aaPredicted RBP22.49■■□□□ 1.19
CLN3-211ENST00000564091 AFDNP55196 1824 aaKnown RBP22.48■■□□□ 1.19
CLN3-211ENST00000564091 ST5P78524 1137 aa22.48■■□□□ 1.19
CLN3-211ENST00000564091 NBPF26B4DH59 902 aa22.47■■□□□ 1.19
CLN3-211ENST00000564091 NBPF10Q6P3W6 841 aaKnown RBP22.47■■□□□ 1.19
CLN3-211ENST00000564091 NBPF15Q8N660 670 aa22.47■■□□□ 1.19
CLN3-211ENST00000564091 KLRG1Q96E93 195 aa22.47■■□□□ 1.19
CLN3-211ENST00000564091 MIS18AQ9NYP9 233 aa22.47■■□□□ 1.19
CLN3-211ENST00000564091 SRGNP10124 158 aa22.46■■□□□ 1.19
CLN3-211ENST00000564091 ERFEQ4G0M1 354 aa22.46■■□□□ 1.19
CLN3-211ENST00000564091 NBPF5PQ86XG9 351 aaPredicted RBP22.46■■□□□ 1.19
CLN3-211ENST00000564091 CNKSR1Q969H4 720 aa22.46■■□□□ 1.19
CLN3-211ENST00000564091 POTECB2RU33 542 aa22.45■■□□□ 1.18
CLN3-211ENST00000564091 HTATSF1O43719 755 aaKnown RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms