RNA–Protein interactions for RNA: ENST00000562874.2

SF3B3-203, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 401 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-203ENST00000562874 FKBP8Q14318 412 aa21.08■□□□□ 0.97
SF3B3-203ENST00000562874 TTC5Q8N0Z6 440 aa21.07■□□□□ 0.96
SF3B3-203ENST00000562874 NUDCQ9Y266 331 aa21.07■□□□□ 0.96
SF3B3-203ENST00000562874 CEMIPQ8WUJ3 1361 aa21.07■□□□□ 0.96
SF3B3-203ENST00000562874 CCDC88AQ3V6T2 1871 aa21.07■□□□□ 0.96
SF3B3-203ENST00000562874 PARP3Q9Y6F1 533 aa21.06■□□□□ 0.96
SF3B3-203ENST00000562874 SBF1O95248 1867 aa21.05■□□□□ 0.96
SF3B3-203ENST00000562874 COL11A2P13942 1736 aaPredicted RBP21.05■□□□□ 0.96
SF3B3-203ENST00000562874 DDR1Q08345 913 aa21.05■□□□□ 0.96
SF3B3-203ENST00000562874 HEG1Q9ULI3 1381 aa21.05■□□□□ 0.96
SF3B3-203ENST00000562874 USPL1Q5W0Q7 1092 aa21.04■□□□□ 0.96
SF3B3-203ENST00000562874 ZNF496Q96IT1 587 aaPredicted RBP21.04■□□□□ 0.96
SF3B3-203ENST00000562874 ATP10DQ9P241 1426 aa21.04■□□□□ 0.96
SF3B3-203ENST00000562874 CANXP27824 592 aaKnown RBP21.03■□□□□ 0.96
SF3B3-203ENST00000562874 A0A0G2JLW4 131 aa21.02■□□□□ 0.96
SF3B3-203ENST00000562874 KCNQ3O43525 872 aa21.02■□□□□ 0.96
SF3B3-203ENST00000562874 ZNF790Q6PG37 636 aa21.02■□□□□ 0.96
SF3B3-203ENST00000562874 VSIG10Q8N0Z9 540 aa21.02■□□□□ 0.96
SF3B3-203ENST00000562874 ZPR1O75312 459 aa21.01■□□□□ 0.95
SF3B3-203ENST00000562874 MCM10Q7L590 875 aa21.01■□□□□ 0.95
SF3B3-203ENST00000562874 ADCY9O60503 1353 aa21■□□□□ 0.95
SF3B3-203ENST00000562874 DPEP1P16444 411 aa21■□□□□ 0.95
SF3B3-203ENST00000562874 DCTN1Q14203 1278 aa21■□□□□ 0.95
SF3B3-203ENST00000562874 BCS1LQ9Y276 419 aa21■□□□□ 0.95
SF3B3-203ENST00000562874 POLRMTO00411 1230 aaKnown RBP20.99■□□□□ 0.95
SF3B3-203ENST00000562874 ZNF330Q9Y3S2 320 aaPredicted RBP20.99■□□□□ 0.95
SF3B3-203ENST00000562874 BTBD11A6QL63 1104 aa20.98■□□□□ 0.95
SF3B3-203ENST00000562874 TGFB2P61812 414 aa20.98■□□□□ 0.95
SF3B3-203ENST00000562874 NARFQ9UHQ1 456 aa20.98■□□□□ 0.95
SF3B3-203ENST00000562874 FCHSD2O94868 740 aa20.97■□□□□ 0.95
SF3B3-203ENST00000562874 RTF1Q92541 710 aaKnown RBP20.97■□□□□ 0.95
SF3B3-203ENST00000562874 FMNL2Q96PY5 1086 aa20.97■□□□□ 0.95
SF3B3-203ENST00000562874 BCL2L12Q9HB09 334 aa20.97■□□□□ 0.95
SF3B3-203ENST00000562874 TIAM2Q8IVF5 1701 aa20.96■□□□□ 0.95
SF3B3-203ENST00000562874 ARFGEF2Q9Y6D5 1785 aa20.96■□□□□ 0.95
SF3B3-203ENST00000562874 STARD3NLO95772 234 aa20.96■□□□□ 0.95
SF3B3-203ENST00000562874 NFIXQ14938 502 aa20.96■□□□□ 0.95
SF3B3-203ENST00000562874 ZNF526Q8TF50 670 aaPredicted RBP20.96■□□□□ 0.95
SF3B3-203ENST00000562874 NUP98P52948 1817 aa20.96■□□□□ 0.95
SF3B3-203ENST00000562874 CARMIL3Q8ND23 1372 aa20.96■□□□□ 0.95
SF3B3-203ENST00000562874 PRAMEF22A3QJZ6 481 aa20.95■□□□□ 0.94
SF3B3-203ENST00000562874 GIGYF1O75420 1035 aaPredicted RBP20.95■□□□□ 0.94
SF3B3-203ENST00000562874 TM4SF1P30408 202 aa20.95■□□□□ 0.94
SF3B3-203ENST00000562874 PIP4K2AP48426 406 aaPredicted RBP20.95■□□□□ 0.94
SF3B3-203ENST00000562874 CHRNA5P30532 468 aa20.94■□□□□ 0.94
SF3B3-203ENST00000562874 EIF5P55010 431 aaKnown RBP20.94■□□□□ 0.94
SF3B3-203ENST00000562874 A1BGP04217 495 aa20.93■□□□□ 0.94
SF3B3-203ENST00000562874 KCNA3P22001 575 aa20.93■□□□□ 0.94
SF3B3-203ENST00000562874 BICDL1Q6ZP65 573 aa20.93■□□□□ 0.94
SF3B3-203ENST00000562874 DDX10Q13206 875 aaKnown RBP20.92■□□□□ 0.94
SF3B3-203ENST00000562874 TBC1D2BQ9UPU7 963 aa20.91■□□□□ 0.94
SF3B3-203ENST00000562874 C1QTNF8P60827 252 aa20.9■□□□□ 0.94
SF3B3-203ENST00000562874 TEX13AQ9BXU3 409 aaPredicted RBP20.9■□□□□ 0.94
SF3B3-203ENST00000562874 DICER1Q9UPY3 1922 aaKnown RBP20.9■□□□□ 0.94
SF3B3-203ENST00000562874 SERPINB2P05120 415 aa20.89■□□□□ 0.93
SF3B3-203ENST00000562874 NEFMP07197 916 aa20.89■□□□□ 0.93
SF3B3-203ENST00000562874 IL6STP40189 918 aaPredicted RBP20.89■□□□□ 0.93
SF3B3-203ENST00000562874 TBC1D9BQ66K14 1250 aa20.89■□□□□ 0.93
SF3B3-203ENST00000562874 ARHGAP27Q6ZUM4 889 aa20.89■□□□□ 0.93
SF3B3-203ENST00000562874 PLEKHF1Q96S99 279 aa20.89■□□□□ 0.93
SF3B3-203ENST00000562874 THUMPD2Q9BTF0 503 aaKnown RBP20.89■□□□□ 0.93
SF3B3-203ENST00000562874 MIS18AQ9NYP9 233 aa20.89■□□□□ 0.93
SF3B3-203ENST00000562874 USP16Q9Y5T5 823 aa20.89■□□□□ 0.93
SF3B3-203ENST00000562874 FER1L6Q2WGJ9 1857 aa20.89■□□□□ 0.93
SF3B3-203ENST00000562874 A0A087WZG4 1122 aa20.88■□□□□ 0.93
SF3B3-203ENST00000562874 GPBP1L1Q9HC44 474 aaPredicted RBP20.88■□□□□ 0.93
SF3B3-203ENST00000562874 PIM2Q9P1W9 311 aa20.88■□□□□ 0.93
SF3B3-203ENST00000562874 MAPK8IP3Q9UPT6 1336 aa20.87■□□□□ 0.93
SF3B3-203ENST00000562874 SLX4Q8IY92 1834 aa20.87■□□□□ 0.93
SF3B3-203ENST00000562874 TNRC6CQ9HCJ0 1690 aaKnown RBP20.86■□□□□ 0.93
SF3B3-203ENST00000562874 SENP3-EIF4A1A0A087X0R7 540 aa20.86■□□□□ 0.93
SF3B3-203ENST00000562874 HTATSF1O43719 755 aaKnown RBP20.86■□□□□ 0.93
SF3B3-203ENST00000562874 DALRD3Q5D0E6 543 aaKnown RBP20.86■□□□□ 0.93
SF3B3-203ENST00000562874 CCDC24Q8N4L8 307 aa20.86■□□□□ 0.93
SF3B3-203ENST00000562874 ANKRD36CQ5JPF3 1778 aa20.86■□□□□ 0.93
SF3B3-203ENST00000562874 CAMTA2O94983 1202 aa20.85■□□□□ 0.93
SF3B3-203ENST00000562874 SNRPA1P09661 255 aaKnown RBP20.85■□□□□ 0.93
SF3B3-203ENST00000562874 NFE2L2Q16236 605 aa20.85■□□□□ 0.93
SF3B3-203ENST00000562874 RALBP1Q15311 655 aa20.84■□□□□ 0.93
SF3B3-203ENST00000562874 TAF7Q15545 349 aaPredicted RBP20.84■□□□□ 0.93
SF3B3-203ENST00000562874 NPM2Q86SE8 214 aaKnown RBP20.84■□□□□ 0.93
SF3B3-203ENST00000562874 DZIP3Q86Y13 1208 aaKnown RBP20.84■□□□□ 0.93
SF3B3-203ENST00000562874 MYBBP1AQ9BQG0 1328 aaKnown RBP20.83■□□□□ 0.93
SF3B3-203ENST00000562874 C2CD5Q86YS7 1000 aa20.82■□□□□ 0.92
SF3B3-203ENST00000562874 NBPF26B4DH59 902 aa20.81■□□□□ 0.92
SF3B3-203ENST00000562874 PRR5LQ6MZQ0 368 aa20.81■□□□□ 0.92
SF3B3-203ENST00000562874 NBPF10Q6P3W6 841 aaKnown RBP20.81■□□□□ 0.92
SF3B3-203ENST00000562874 NBPF15Q8N660 670 aa20.81■□□□□ 0.92
SF3B3-203ENST00000562874 RASSF7Q02833 373 aa20.8■□□□□ 0.92
SF3B3-203ENST00000562874 C9orf131Q5VYM1 1079 aa20.79■□□□□ 0.92
SF3B3-203ENST00000562874 CCDC146Q8IYE0 955 aa20.79■□□□□ 0.92
SF3B3-203ENST00000562874 LAMB2P55268 1798 aa20.78■□□□□ 0.92
SF3B3-203ENST00000562874 NPHP1O15259 732 aa20.78■□□□□ 0.92
SF3B3-203ENST00000562874 CNBD1Q8NA66 436 aa20.77■□□□□ 0.92
SF3B3-203ENST00000562874 SETDB2Q96T68 719 aa20.77■□□□□ 0.92
SF3B3-203ENST00000562874 PNNQ9H307 717 aaKnown RBP20.77■□□□□ 0.92
SF3B3-203ENST00000562874 RNF181Q9P0P0 153 aa20.77■□□□□ 0.92
SF3B3-203ENST00000562874 RRP7AQ9Y3A4 280 aaKnown RBP20.77■□□□□ 0.92
SF3B3-203ENST00000562874 H0YIN7 160 aa20.76■□□□□ 0.91
SF3B3-203ENST00000562874 PNISRQ8TF01 805 aaKnown RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms