RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 DDX21Q9NR30 783 aaKnown RBP eCLIP17.73■□□□□ 0.43
CLK3-209ENST00000562670 CHPF2Q9P2E5 772 aa17.73■□□□□ 0.43
CLK3-209ENST00000562670 TJP1Q07157 1748 aa17.72■□□□□ 0.43
CLK3-209ENST00000562670 TCERG1O14776 1098 aaKnown RBP17.72■□□□□ 0.43
CLK3-209ENST00000562670 HYPKQ9NX55 129 aa17.72■□□□□ 0.43
CLK3-209ENST00000562670 ASAP1Q9ULH1 1129 aa17.72■□□□□ 0.43
CLK3-209ENST00000562670 SBF2Q86WG5 1849 aa17.72■□□□□ 0.43
CLK3-209ENST00000562670 EIF2S2P20042 333 aaKnown RBP17.71■□□□□ 0.43
CLK3-209ENST00000562670 SMARCC1Q92922 1105 aaPredicted RBP17.71■□□□□ 0.43
CLK3-209ENST00000562670 CHMP4BQ9H444 224 aaKnown RBP17.71■□□□□ 0.43
CLK3-209ENST00000562670 DDX19BQ9UMR2 479 aa17.71■□□□□ 0.43
CLK3-209ENST00000562670 TNNQ9UQP3 1299 aa17.71■□□□□ 0.43
CLK3-209ENST00000562670 BRWD3Q6RI45 1802 aa17.7■□□□□ 0.42
CLK3-209ENST00000562670 IBTKQ9P2D0 1353 aaPredicted RBP17.7■□□□□ 0.42
CLK3-209ENST00000562670 PRAMEF22A3QJZ6 481 aa17.7■□□□□ 0.42
CLK3-209ENST00000562670 PDIA6Q15084 440 aa17.7■□□□□ 0.42
CLK3-209ENST00000562670 INTS3Q68E01 1043 aaKnown RBP17.7■□□□□ 0.42
CLK3-209ENST00000562670 COG6Q9Y2V7 657 aa17.7■□□□□ 0.42
CLK3-209ENST00000562670 RREB1Q92766 1687 aa17.7■□□□□ 0.42
CLK3-209ENST00000562670 BTAF1O14981 1849 aa17.7■□□□□ 0.42
CLK3-209ENST00000562670 G2E3Q7L622 706 aa17.69■□□□□ 0.42
CLK3-209ENST00000562670 LRP10Q7Z4F1 713 aa17.69■□□□□ 0.42
CLK3-209ENST00000562670 TMEM57Q8N5G2 664 aa17.69■□□□□ 0.42
CLK3-209ENST00000562670 CLUAP1Q96AJ1 413 aa17.69■□□□□ 0.42
CLK3-209ENST00000562670 SYTL4Q96C24 671 aaPredicted RBP17.69■□□□□ 0.42
CLK3-209ENST00000562670 PALLDQ8WX93 1383 aa17.68■□□□□ 0.42
CLK3-209ENST00000562670 ATP10DQ9P241 1426 aa17.68■□□□□ 0.42
CLK3-209ENST00000562670 USP16Q9Y5T5 823 aa17.68■□□□□ 0.42
CLK3-209ENST00000562670 PTCD1O75127 700 aaKnown RBP17.67■□□□□ 0.42
CLK3-209ENST00000562670 CCT4P50991 539 aaKnown RBP17.67■□□□□ 0.42
CLK3-209ENST00000562670 FKBP5Q13451 457 aaPredicted RBP17.67■□□□□ 0.42
CLK3-209ENST00000562670 NECTIN2Q92692 538 aa17.67■□□□□ 0.42
CLK3-209ENST00000562670 ACSBG1Q96GR2 724 aa17.67■□□□□ 0.42
CLK3-209ENST00000562670 COL5A3P25940 1745 aaPredicted RBP17.67■□□□□ 0.42
CLK3-209ENST00000562670 KRT27Q7Z3Y8 459 aa17.66■□□□□ 0.42
CLK3-209ENST00000562670 ITPRIPQ8IWB1 547 aa17.66■□□□□ 0.42
CLK3-209ENST00000562670 LY75O60449 1722 aa17.66■□□□□ 0.42
CLK3-209ENST00000562670 STARD3NLO95772 234 aa17.65■□□□□ 0.42
CLK3-209ENST00000562670 DDX58O95786 925 aaKnown RBP17.65■□□□□ 0.42
CLK3-209ENST00000562670 RXRBP28702 533 aa17.65■□□□□ 0.42
CLK3-209ENST00000562670 PROSER3Q2NL68 480 aa17.65■□□□□ 0.42
CLK3-209ENST00000562670 FAM196AQ6ZSG2 479 aa17.65■□□□□ 0.42
CLK3-209ENST00000562670 PHAXQ9H814 394 aaKnown RBP17.65■□□□□ 0.42
CLK3-209ENST00000562670 ADCY9O60503 1353 aa17.65■□□□□ 0.42
CLK3-209ENST00000562670 KCNQ2O43526 872 aa17.64■□□□□ 0.41
CLK3-209ENST00000562670 SLC4A9Q96Q91 983 aa17.64■□□□□ 0.41
CLK3-209ENST00000562670 RGS17Q9UGC6 210 aaPredicted RBP17.64■□□□□ 0.41
CLK3-209ENST00000562670 LOC102724428A0A0B4J2F2 783 aa17.63■□□□□ 0.41
CLK3-209ENST00000562670 SIK1P57059 783 aa17.63■□□□□ 0.41
CLK3-209ENST00000562670 DNAJC10Q8IXB1 793 aa17.63■□□□□ 0.41
CLK3-209ENST00000562670 RBM42Q9BTD8 480 aaKnown RBP17.63■□□□□ 0.41
CLK3-209ENST00000562670 ZBTB40Q9NUA8 1239 aa17.63■□□□□ 0.41
CLK3-209ENST00000562670 NUP188Q5SRE5 1749 aa17.62■□□□□ 0.41
CLK3-209ENST00000562670 NBPF26B4DH59 902 aa17.62■□□□□ 0.41
CLK3-209ENST00000562670 CYP19A1P11511 503 aaPredicted RBP17.62■□□□□ 0.41
CLK3-209ENST00000562670 NBPF14Q5TI25 921 aa17.62■□□□□ 0.41
CLK3-209ENST00000562670 NBPF10Q6P3W6 841 aaKnown RBP17.62■□□□□ 0.41
CLK3-209ENST00000562670 KSR2Q6VAB6 950 aa17.62■□□□□ 0.41
CLK3-209ENST00000562670 NBPF15Q8N660 670 aa17.62■□□□□ 0.41
CLK3-209ENST00000562670 DNAAF4Q8WXU2 420 aa17.62■□□□□ 0.41
CLK3-209ENST00000562670 CCDC136Q96JN2 1154 aa17.62■□□□□ 0.41
CLK3-209ENST00000562670 BCL11BQ9C0K0 894 aaPredicted RBP17.62■□□□□ 0.41
CLK3-209ENST00000562670 KAT6BQ8WYB5 2073 aa17.62■□□□□ 0.41
CLK3-209ENST00000562670 ARFGEF2Q9Y6D5 1785 aa17.61■□□□□ 0.41
CLK3-209ENST00000562670 ZBTB7BO15156 539 aaPredicted RBP17.61■□□□□ 0.41
CLK3-209ENST00000562670 ANXA1P04083 346 aa17.61■□□□□ 0.41
CLK3-209ENST00000562670 PI4KAP2A4QPH2 592 aa17.6■□□□□ 0.41
CLK3-209ENST00000562670 F6X3S4 739 aa17.6■□□□□ 0.41
CLK3-209ENST00000562670 PI4KAP1Q8N8J0 262 aa17.6■□□□□ 0.41
CLK3-209ENST00000562670 XAGE3Q8WTP9 111 aa17.59■□□□□ 0.41
CLK3-209ENST00000562670 RGPD3A6NKT7 1758 aaPredicted RBP17.58■□□□□ 0.41
CLK3-209ENST00000562670 RGPD4Q7Z3J3 1758 aa17.58■□□□□ 0.41
CLK3-209ENST00000562670 ALDH1L1O75891 902 aa17.58■□□□□ 0.4
CLK3-209ENST00000562670 MYL6BP14649 208 aa17.58■□□□□ 0.4
CLK3-209ENST00000562670 BEND3Q5T5X7 828 aa17.58■□□□□ 0.4
CLK3-209ENST00000562670 B4GALNT3Q6L9W6 998 aa17.58■□□□□ 0.4
CLK3-209ENST00000562670 COPS6Q7L5N1 327 aa17.58■□□□□ 0.4
CLK3-209ENST00000562670 KDM2BQ8NHM5 1336 aa17.57■□□□□ 0.4
CLK3-209ENST00000562670 CNTNAP4Q9C0A0 1308 aa17.57■□□□□ 0.4
CLK3-209ENST00000562670 A1BGP04217 495 aa17.57■□□□□ 0.4
CLK3-209ENST00000562670 ATP6V1AP38606 617 aa17.57■□□□□ 0.4
CLK3-209ENST00000562670 IL6STP40189 918 aaPredicted RBP17.57■□□□□ 0.4
CLK3-209ENST00000562670 POTEAQ6S8J7 498 aa17.57■□□□□ 0.4
CLK3-209ENST00000562670 PLBD2Q8NHP8 589 aa17.57■□□□□ 0.4
CLK3-209ENST00000562670 SRCIN1Q9C0H9 1055 aa17.57■□□□□ 0.4
CLK3-209ENST00000562670 MAP3K2Q9Y2U5 619 aa17.57■□□□□ 0.4
CLK3-209ENST00000562670 HMGB2P26583 209 aaKnown RBP17.56■□□□□ 0.4
CLK3-209ENST00000562670 ITPK1Q13572 414 aa17.56■□□□□ 0.4
CLK3-209ENST00000562670 FAM182BQ5T319 152 aa17.56■□□□□ 0.4
CLK3-209ENST00000562670 SLC4A10Q6U841 1118 aa17.56■□□□□ 0.4
CLK3-209ENST00000562670 ANKRD13DQ6ZTN6 518 aa17.56■□□□□ 0.4
CLK3-209ENST00000562670 LINS1Q8NG48 757 aa17.56■□□□□ 0.4
CLK3-209ENST00000562670 CCDC87Q9NVE4 849 aa17.56■□□□□ 0.4
CLK3-209ENST00000562670 TAF1LQ8IZX4 1826 aa17.56■□□□□ 0.4
CLK3-209ENST00000562670 GNAI3P08754 354 aa17.55■□□□□ 0.4
CLK3-209ENST00000562670 CENPQQ7L2Z9 268 aaPredicted RBP17.55■□□□□ 0.4
CLK3-209ENST00000562670 PTF1AQ7RTS3 328 aa17.55■□□□□ 0.4
CLK3-209ENST00000562670 METTL22Q9BUU2 404 aaPredicted RBP17.55■□□□□ 0.4
CLK3-209ENST00000562670 ZBTB1Q9Y2K1 713 aa17.55■□□□□ 0.4
CLK3-209ENST00000562670 HDAC1Q13547 482 aaPredicted RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms