RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GLI2P10070 1586 aa11.23□□□□□ -0.61
VPS39-205ENST00000562258 CLTCL1P53675 1640 aa11.23□□□□□ -0.61
VPS39-205ENST00000562258 SBNO2Q9Y2G9 1366 aa11.23□□□□□ -0.61
VPS39-205ENST00000562258 VAMP4O75379 141 aa11.23□□□□□ -0.61
VPS39-205ENST00000562258 ERC1Q8IUD2 1116 aa11.23□□□□□ -0.61
VPS39-205ENST00000562258 FAM135BQ49AJ0 1406 aa11.22□□□□□ -0.61
VPS39-205ENST00000562258 HTATSF1O43719 755 aaKnown RBP11.22□□□□□ -0.61
VPS39-205ENST00000562258 PARP3Q9Y6F1 533 aa11.22□□□□□ -0.61
VPS39-205ENST00000562258 PDE4AP27815 886 aa11.22□□□□□ -0.61
VPS39-205ENST00000562258 PLCB2Q00722 1185 aa11.22□□□□□ -0.61
VPS39-205ENST00000562258 KDM5CP41229 1560 aa11.22□□□□□ -0.61
VPS39-205ENST00000562258 IFIT1P09914 478 aaKnown RBP11.22□□□□□ -0.61
VPS39-205ENST00000562258 ST5P78524 1137 aa11.22□□□□□ -0.61
VPS39-205ENST00000562258 CAMSAP1Q5T5Y3 1602 aa11.22□□□□□ -0.61
VPS39-205ENST00000562258 ZFYVE9O95405 1425 aa11.21□□□□□ -0.61
VPS39-205ENST00000562258 KSR2Q6VAB6 950 aa11.21□□□□□ -0.61
VPS39-205ENST00000562258 RIMS1Q86UR5 1692 aaKnown RBP11.21□□□□□ -0.61
VPS39-205ENST00000562258 CTDP1Q9Y5B0 961 aaPredicted RBP11.21□□□□□ -0.61
VPS39-205ENST00000562258 RPAP2Q8IXW5 612 aaPredicted RBP11.21□□□□□ -0.61
VPS39-205ENST00000562258 MYOM2P54296 1465 aa11.21□□□□□ -0.62
VPS39-205ENST00000562258 IKQ13123 557 aaPredicted RBP11.21□□□□□ -0.62
VPS39-205ENST00000562258 NFXL1Q6ZNB6 911 aa11.21□□□□□ -0.62
VPS39-205ENST00000562258 TRIM35Q9UPQ4 493 aa11.21□□□□□ -0.62
VPS39-205ENST00000562258 ARHGEF40Q8TER5 1519 aa11.21□□□□□ -0.62
VPS39-205ENST00000562258 INSRP06213 1382 aa11.21□□□□□ -0.62
VPS39-205ENST00000562258 REC8O95072 547 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 CAVIN4Q5BKX8 364 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 RALYLQ86SE5 291 aaKnown RBP11.2□□□□□ -0.62
VPS39-205ENST00000562258 CNTROBQ8N137 903 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 LOC102724428A0A0B4J2F2 783 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 SIK1P57059 783 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 TSHZ3Q63HK5 1081 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 SYNE3Q6ZMZ3 975 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 FAM196AQ6ZSG2 479 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 DDX21Q9NR30 783 aaKnown RBP eCLIP11.2□□□□□ -0.62
VPS39-205ENST00000562258 JAG2Q9Y219 1238 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 FOSBP53539 338 aa11.2□□□□□ -0.62
VPS39-205ENST00000562258 CDC5LQ99459 802 aaKnown RBP11.2□□□□□ -0.62
VPS39-205ENST00000562258 RBM19Q9Y4C8 960 aaKnown RBP11.2□□□□□ -0.62
VPS39-205ENST00000562258 F8W031 263 aaPredicted RBP11.19□□□□□ -0.62
VPS39-205ENST00000562258 PA2G4Q9UQ80 394 aaKnown RBP11.19□□□□□ -0.62
VPS39-205ENST00000562258 ALKQ9UM73 1620 aa11.19□□□□□ -0.62
VPS39-205ENST00000562258 GRM8O00222 908 aa11.19□□□□□ -0.62
VPS39-205ENST00000562258 IRS4O14654 1257 aaPredicted RBP11.19□□□□□ -0.62
VPS39-205ENST00000562258 AKAP17AQ02040 695 aaKnown RBP11.19□□□□□ -0.62
VPS39-205ENST00000562258 UTP14AQ9BVJ6 771 aaKnown RBP11.19□□□□□ -0.62
VPS39-205ENST00000562258 CCDC87Q9NVE4 849 aa11.19□□□□□ -0.62
VPS39-205ENST00000562258 IQGAP3Q86VI3 1631 aa11.19□□□□□ -0.62
VPS39-205ENST00000562258 MARCH6O60337 910 aa11.19□□□□□ -0.62
VPS39-205ENST00000562258 GCC1Q96CN9 775 aa11.19□□□□□ -0.62
VPS39-205ENST00000562258 AGLP35573 1532 aa11.19□□□□□ -0.62
VPS39-205ENST00000562258 NKTRP30414 1462 aaKnown RBP11.18□□□□□ -0.62
VPS39-205ENST00000562258 KCNQ2O43526 872 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 SLC4A8Q2Y0W8 1093 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 CPLX1O14810 134 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 RIMBP2O15034 1052 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 ST18O60284 1047 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 CLSTN1O94985 981 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 CNBD1Q8NA66 436 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 IL16Q14005 1332 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 ADAMTS13Q76LX8 1427 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 PRAMEF22A3QJZ6 481 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 INTS3Q68E01 1043 aaKnown RBP11.18□□□□□ -0.62
VPS39-205ENST00000562258 CWC27Q6UX04 472 aaKnown RBP11.18□□□□□ -0.62
VPS39-205ENST00000562258 LINS1Q8NG48 757 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 KIF1BPQ96EK5 621 aa11.18□□□□□ -0.62
VPS39-205ENST00000562258 GJD4Q96KN9 370 aaPredicted RBP11.18□□□□□ -0.62
VPS39-205ENST00000562258 CWC22Q9HCG8 908 aaKnown RBP11.18□□□□□ -0.62
VPS39-205ENST00000562258 CHL1O00533 1208 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 CCDC152Q4G0S7 254 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 PAXIP1Q6ZW49 1069 aaPredicted RBP11.17□□□□□ -0.62
VPS39-205ENST00000562258 ANKRD18AQ8IVF6 992 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 ATF5Q9Y2D1 282 aaPredicted RBP11.17□□□□□ -0.62
VPS39-205ENST00000562258 PTPRCP08575 1304 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 C1orf167Q5SNV9 1468 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 RNF20Q5VTR2 975 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 CHD1LQ86WJ1 897 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 INO80Q9ULG1 1556 aaPredicted RBP11.17□□□□□ -0.62
VPS39-205ENST00000562258 ADGRB3O60242 1522 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 ERVV-2B6SEH9 535 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 CYP27B1O15528 508 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 RBM6P78332 1123 aaKnown RBP11.17□□□□□ -0.62
VPS39-205ENST00000562258 GRM1Q13255 1194 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 RBM26Q5T8P6 1007 aaKnown RBP11.17□□□□□ -0.62
VPS39-205ENST00000562258 MCTP1Q6DN14 999 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 TTLL7Q6ZT98 887 aa11.17□□□□□ -0.62
VPS39-205ENST00000562258 JCADQ9P266 1359 aa11.16□□□□□ -0.62
VPS39-205ENST00000562258 PPRC1Q5VV67 1664 aaKnown RBP11.16□□□□□ -0.62
VPS39-205ENST00000562258 ERICH2A1L162 156 aa11.16□□□□□ -0.62
VPS39-205ENST00000562258 FAM184AQ8NB25 1140 aa11.16□□□□□ -0.62
VPS39-205ENST00000562258 RASSF8Q8NHQ8 419 aa11.16□□□□□ -0.62
VPS39-205ENST00000562258 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.16□□□□□ -0.622e-6■■■■□ 26.2
VPS39-205ENST00000562258 EIF4A1P60842 406 aaKnown RBP11.16□□□□□ -0.62
VPS39-205ENST00000562258 MRPL50Q8N5N7 158 aaKnown RBP11.16□□□□□ -0.62
VPS39-205ENST00000562258 KLHDC4Q8TBB5 520 aa11.16□□□□□ -0.62
VPS39-205ENST00000562258 ZBTB1Q9Y2K1 713 aa11.16□□□□□ -0.62
VPS39-205ENST00000562258 DZIP1Q86YF9 867 aaKnown RBP11.15□□□□□ -0.62
VPS39-205ENST00000562258 PIGBQ92521 554 aa11.15□□□□□ -0.62
VPS39-205ENST00000562258 AKAP2Q9Y2D5 859 aa11.15□□□□□ -0.62
VPS39-205ENST00000562258 RLBP1P12271 317 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms