RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 CYP2C19P33261 490 aa22.35■■□□□ 1.17
RAB40C-206ENST00000561781 ZNF397Q8NF99 534 aaPredicted RBP22.35■■□□□ 1.17
RAB40C-206ENST00000561781 GOLGA6L6A8MZA4 724 aa22.34■■□□□ 1.17
RAB40C-206ENST00000561781 U2AF1L5P0DN76 240 aaPredicted RBP22.34■■□□□ 1.17
RAB40C-206ENST00000561781 U2AF1Q01081 240 aaKnown RBP eCLIP22.34■■□□□ 1.17
RAB40C-206ENST00000561781 CTR9Q6PD62 1173 aa22.34■■□□□ 1.17
RAB40C-206ENST00000561781 USP26Q9BXU7 913 aa22.34■■□□□ 1.17
RAB40C-206ENST00000561781 PYCARDQ9ULZ3 195 aa22.34■■□□□ 1.17
RAB40C-206ENST00000561781 ACEP12821 1306 aa22.34■■□□□ 1.17
RAB40C-206ENST00000561781 RAD51AP2Q09MP3 1159 aa22.33■■□□□ 1.17
RAB40C-206ENST00000561781 PAXBP1Q9Y5B6 917 aa22.33■■□□□ 1.17
RAB40C-206ENST00000561781 ST18O60284 1047 aa22.33■■□□□ 1.17
RAB40C-206ENST00000561781 KDM4AO75164 1064 aa22.33■■□□□ 1.17
RAB40C-206ENST00000561781 HNRNPH2P55795 449 aaKnown RBP22.33■■□□□ 1.17
RAB40C-206ENST00000561781 CFAP53Q96M91 514 aa22.33■■□□□ 1.17
RAB40C-206ENST00000561781 C1orf115Q9H7X2 142 aa22.33■■□□□ 1.17
RAB40C-206ENST00000561781 ANKARQ7Z5J8 1434 aa22.33■■□□□ 1.16
RAB40C-206ENST00000561781 NGDNQ8NEJ9 315 aaKnown RBP22.32■■□□□ 1.16
RAB40C-206ENST00000561781 TOPAZ1Q8N9V7 1692 aa22.32■■□□□ 1.16
RAB40C-206ENST00000561781 ATAD2Q6PL18 1390 aa22.32■■□□□ 1.16
RAB40C-206ENST00000561781 KCNF1Q9H3M0 494 aa22.32■■□□□ 1.16
RAB40C-206ENST00000561781 APPP05067 770 aa22.31■■□□□ 1.16
RAB40C-206ENST00000561781 BCCIPQ9P287 314 aaKnown RBP eCLIP22.31■■□□□ 1.16
RAB40C-206ENST00000561781 DHX37Q8IY37 1157 aaKnown RBP22.3■■□□□ 1.16
RAB40C-206ENST00000561781 CD163L1Q9NR16 1453 aa22.3■■□□□ 1.16
RAB40C-206ENST00000561781 TRERF1Q96PN7 1200 aa22.3■■□□□ 1.16
RAB40C-206ENST00000561781 RASSF4Q9H2L5 321 aa22.3■■□□□ 1.16
RAB40C-206ENST00000561781 A0A1W2PP64 1363 aa22.3■■□□□ 1.16
RAB40C-206ENST00000561781 CCDC112Q8NEF3 446 aa22.29■■□□□ 1.16
RAB40C-206ENST00000561781 RSPH14Q9UHP6 348 aa22.29■■□□□ 1.16
RAB40C-206ENST00000561781 REC8O95072 547 aa22.29■■□□□ 1.16
RAB40C-206ENST00000561781 NOL10Q9BSC4 688 aaKnown RBP22.29■■□□□ 1.16
RAB40C-206ENST00000561781 ZBTB7BO15156 539 aaPredicted RBP22.28■■□□□ 1.16
RAB40C-206ENST00000561781 ZBTB9Q96C00 473 aa22.28■■□□□ 1.16
RAB40C-206ENST00000561781 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.28■■□□□ 1.16
RAB40C-206ENST00000561781 NOP2P46087 812 aaKnown RBP22.28■■□□□ 1.16
RAB40C-206ENST00000561781 ZNF622Q969S3 477 aaKnown RBP eCLIP22.28■■□□□ 1.16
RAB40C-206ENST00000561781 TRIM35Q9UPQ4 493 aa22.28■■□□□ 1.16
RAB40C-206ENST00000561781 SIRT2Q8IXJ6 389 aa22.27■■□□□ 1.16
RAB40C-206ENST00000561781 GTF2A1P52655 376 aaPredicted RBP22.26■■□□□ 1.15
RAB40C-206ENST00000561781 NUTM2GQ5VZR2 741 aa22.26■■□□□ 1.15
RAB40C-206ENST00000561781 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.26■■□□□ 1.15
RAB40C-206ENST00000561781 KIF1BPQ96EK5 621 aa22.26■■□□□ 1.15
RAB40C-206ENST00000561781 PSME1Q06323 249 aa22.25■■□□□ 1.15
RAB40C-206ENST00000561781 KMT5BQ4FZB7 885 aa22.25■■□□□ 1.15
RAB40C-206ENST00000561781 PLEKHG3A1L390 1219 aa22.25■■□□□ 1.15
RAB40C-206ENST00000561781 TMPOP42166 694 aaKnown RBP22.25■■□□□ 1.15
RAB40C-206ENST00000561781 CCDC183Q5T5S1 534 aa22.25■■□□□ 1.15
RAB40C-206ENST00000561781 LMOD2Q6P5Q4 547 aa22.25■■□□□ 1.15
RAB40C-206ENST00000561781 PLEKHM2Q8IWE5 1019 aa22.25■■□□□ 1.15
RAB40C-206ENST00000561781 ITSN1Q15811 1721 aa22.24■■□□□ 1.15
RAB40C-206ENST00000561781 BRD1O95696 1058 aa22.24■■□□□ 1.15
RAB40C-206ENST00000561781 SLFNL1Q499Z3 407 aa22.24■■□□□ 1.15
RAB40C-206ENST00000561781 MUM1L1Q5H9M0 696 aa22.23■■□□□ 1.15
RAB40C-206ENST00000561781 INTS3Q68E01 1043 aaKnown RBP22.23■■□□□ 1.15
RAB40C-206ENST00000561781 DHX16O60231 1041 aaKnown RBP22.23■■□□□ 1.15
RAB40C-206ENST00000561781 HCLS1P14317 486 aaPredicted RBP22.23■■□□□ 1.15
RAB40C-206ENST00000561781 HSPA1LP34931 641 aa22.23■■□□□ 1.15
RAB40C-206ENST00000561781 CHMP4CQ96CF2 233 aa22.23■■□□□ 1.15
RAB40C-206ENST00000561781 ALDH1L2Q3SY69 923 aa22.22■■□□□ 1.15
RAB40C-206ENST00000561781 TTC22Q5TAA0 569 aa22.22■■□□□ 1.15
RAB40C-206ENST00000561781 KRT28Q7Z3Y7 464 aa22.22■■□□□ 1.15
RAB40C-206ENST00000561781 ZRANB1Q9UGI0 708 aa22.22■■□□□ 1.15
RAB40C-206ENST00000561781 GADD45BO75293 160 aaPredicted RBP22.22■■□□□ 1.15
RAB40C-206ENST00000561781 TNNT1P13805 278 aa22.22■■□□□ 1.15
RAB40C-206ENST00000561781 MYCBPQ99417 103 aaPredicted RBP22.22■■□□□ 1.15
RAB40C-206ENST00000561781 ZKSCAN7Q9P0L1 754 aaPredicted RBP22.22■■□□□ 1.15
RAB40C-206ENST00000561781 NAA30Q147X3 362 aaPredicted RBP22.21■■□□□ 1.15
RAB40C-206ENST00000561781 PLEKHF1Q96S99 279 aa22.21■■□□□ 1.15
RAB40C-206ENST00000561781 BRMS1Q9HCU9 246 aa22.21■■□□□ 1.15
RAB40C-206ENST00000561781 CPSF1Q10570 1443 aaKnown RBP22.21■■□□□ 1.15
RAB40C-206ENST00000561781 LOC102724159A0A0B4J2E5 919 aa22.21■■□□□ 1.15
RAB40C-206ENST00000561781 RBM6P78332 1123 aaKnown RBP22.21■■□□□ 1.15
RAB40C-206ENST00000561781 PWP2Q15269 919 aaKnown RBP22.21■■□□□ 1.15
RAB40C-206ENST00000561781 IL16Q14005 1332 aa22.21■■□□□ 1.15
RAB40C-206ENST00000561781 NPHP3Q7Z494 1330 aa22.21■■□□□ 1.15
RAB40C-206ENST00000561781 ICE2Q659A1 982 aa22.2■■□□□ 1.14
RAB40C-206ENST00000561781 C16orf45Q96MC5 204 aaPredicted RBP22.2■■□□□ 1.14
RAB40C-206ENST00000561781 GDPD2Q9HCC8 539 aa22.2■■□□□ 1.14
RAB40C-206ENST00000561781 PXDNQ92626 1479 aa22.2■■□□□ 1.14
RAB40C-206ENST00000561781 PLCB2Q00722 1185 aa22.2■■□□□ 1.14
RAB40C-206ENST00000561781 USP6P35125 1406 aa22.19■■□□□ 1.14
RAB40C-206ENST00000561781 BMS1Q14692 1282 aaKnown RBP22.19■■□□□ 1.14
RAB40C-206ENST00000561781 TXLNBQ8N3L3 684 aa22.19■■□□□ 1.14
RAB40C-206ENST00000561781 NCAPGQ9BPX3 1015 aa22.19■■□□□ 1.14
RAB40C-206ENST00000561781 FOXD4L6Q3SYB3 417 aaPredicted RBP22.19■■□□□ 1.14
RAB40C-206ENST00000561781 FOXD4L3Q6VB84 417 aaPredicted RBP22.19■■□□□ 1.14
RAB40C-206ENST00000561781 TMX3Q96JJ7 454 aa22.19■■□□□ 1.14
RAB40C-206ENST00000561781 PUS7Q96PZ0 661 aaKnown RBP22.19■■□□□ 1.14
RAB40C-206ENST00000561781 MX1P20591 662 aa22.18■■□□□ 1.14
RAB40C-206ENST00000561781 HDGFL2Q7Z4V5 671 aaPredicted RBP22.18■■□□□ 1.14
RAB40C-206ENST00000561781 KIF1AQ12756 1690 aa22.18■■□□□ 1.14
RAB40C-206ENST00000561781 TEX35Q5T0J7 233 aa22.18■■□□□ 1.14
RAB40C-206ENST00000561781 NME9Q86XW9 330 aa22.18■■□□□ 1.14
RAB40C-206ENST00000561781 TERF2IPQ9NYB0 399 aa22.18■■□□□ 1.14
RAB40C-206ENST00000561781 NHSL1Q5SYE7 1610 aa22.17■■□□□ 1.14
RAB40C-206ENST00000561781 SMARCA5O60264 1052 aaPredicted RBP22.17■■□□□ 1.14
RAB40C-206ENST00000561781 MYCNP04198 464 aaPredicted RBP22.17■■□□□ 1.14
RAB40C-206ENST00000561781 CASQ1P31415 396 aa22.17■■□□□ 1.14
RAB40C-206ENST00000561781 RNF20Q5VTR2 975 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms