RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 IBTKQ9P2D0 1353 aaPredicted RBP16.15■□□□□ 0.18
SNX1-211ENST00000560829 HMMRO75330 724 aa16.14■□□□□ 0.17
SNX1-211ENST00000560829 CDCA7Q9BWT1 371 aaPredicted RBP16.14■□□□□ 0.17
SNX1-211ENST00000560829 THRAP3Q9Y2W1 955 aaKnown RBP16.14■□□□□ 0.17
SNX1-211ENST00000560829 USP16Q9Y5T5 823 aa16.14■□□□□ 0.17
SNX1-211ENST00000560829 ERBB4Q15303 1308 aa16.14■□□□□ 0.17
SNX1-211ENST00000560829 PAPPAQ13219 1627 aa16.13■□□□□ 0.17
SNX1-211ENST00000560829 C5P01031 1676 aa16.13■□□□□ 0.17
SNX1-211ENST00000560829 ADAMTS2O95450 1211 aa16.13■□□□□ 0.17
SNX1-211ENST00000560829 DDX58O95786 925 aaKnown RBP16.13■□□□□ 0.17
SNX1-211ENST00000560829 ANKRD45Q5TZF3 282 aa16.13■□□□□ 0.17
SNX1-211ENST00000560829 LRP10Q7Z4F1 713 aa16.13■□□□□ 0.17
SNX1-211ENST00000560829 LNPKQ9C0E8 428 aa16.13■□□□□ 0.17
SNX1-211ENST00000560829 SLIT2O94813 1529 aa16.13■□□□□ 0.17
SNX1-211ENST00000560829 NRAPQ86VF7 1730 aa16.12■□□□□ 0.17
SNX1-211ENST00000560829 KCPQ6ZWJ8 1503 aa16.12■□□□□ 0.17
SNX1-211ENST00000560829 SPATA31A1Q5TZJ5 1347 aa16.12■□□□□ 0.17
SNX1-211ENST00000560829 ALDH1L1O75891 902 aa16.12■□□□□ 0.17
SNX1-211ENST00000560829 UBTFL1P0CB47 393 aaPredicted RBP16.12■□□□□ 0.17
SNX1-211ENST00000560829 MAP3K2Q9Y2U5 619 aa16.12■□□□□ 0.17
SNX1-211ENST00000560829 LRP6O75581 1613 aa16.11■□□□□ 0.17
SNX1-211ENST00000560829 ATP8B2P98198 1209 aa16.11■□□□□ 0.17
SNX1-211ENST00000560829 UBR2Q8IWV8 1755 aa16.11■□□□□ 0.17
SNX1-211ENST00000560829 JCADQ9P266 1359 aa16.1■□□□□ 0.17
SNX1-211ENST00000560829 TOGARAM1Q9Y4F4 1720 aa16.1■□□□□ 0.17
SNX1-211ENST00000560829 EXOC5O00471 708 aa16.1■□□□□ 0.17
SNX1-211ENST00000560829 ANP32AP39687 249 aaKnown RBP16.1■□□□□ 0.17
SNX1-211ENST00000560829 TMOD3Q9NYL9 352 aa16.1■□□□□ 0.17
SNX1-211ENST00000560829 LINS1Q8NG48 757 aa16.1■□□□□ 0.17
SNX1-211ENST00000560829 LRRFIP2Q9Y608 721 aaKnown RBP16.1■□□□□ 0.17
SNX1-211ENST00000560829 LAMB4A4D0S4 1761 aa16.08■□□□□ 0.17
SNX1-211ENST00000560829 SPATA31A5Q5VU36 1347 aa16.08■□□□□ 0.17
SNX1-211ENST00000560829 SPATA31A7Q8IWB4 1347 aa16.08■□□□□ 0.17
SNX1-211ENST00000560829 NWD2Q9ULI1 1742 aa16.08■□□□□ 0.17
SNX1-211ENST00000560829 NUTM2BA6NNL0 878 aaPredicted RBP16.08■□□□□ 0.17
SNX1-211ENST00000560829 NUTM2EB1AL46 878 aaPredicted RBP16.08■□□□□ 0.17
SNX1-211ENST00000560829 NUTM2AQ8IVF1 878 aaPredicted RBP16.08■□□□□ 0.17
SNX1-211ENST00000560829 XAGE3Q8WTP9 111 aa16.08■□□□□ 0.17
SNX1-211ENST00000560829 WNK3Q9BYP7 1800 aa16.08■□□□□ 0.16
SNX1-211ENST00000560829 MYL6BP14649 208 aa16.08■□□□□ 0.16
SNX1-211ENST00000560829 COPS6Q7L5N1 327 aa16.08■□□□□ 0.16
SNX1-211ENST00000560829 UTYO14607 1347 aa16.07■□□□□ 0.16
SNX1-211ENST00000560829 NBPF7P0C2Y1 421 aaPredicted RBP16.07■□□□□ 0.16
SNX1-211ENST00000560829 BARGINQ6ZT62 677 aa16.07■□□□□ 0.16
SNX1-211ENST00000560829 VSIG10Q8N0Z9 540 aa16.07■□□□□ 0.16
SNX1-211ENST00000560829 SSH3Q8TE77 659 aa16.07■□□□□ 0.16
SNX1-211ENST00000560829 PIGBQ92521 554 aa16.07■□□□□ 0.16
SNX1-211ENST00000560829 HDAC5Q9UQL6 1122 aa16.07■□□□□ 0.16
SNX1-211ENST00000560829 BCL9O00512 1426 aa16.06■□□□□ 0.16
SNX1-211ENST00000560829 PNMA6EA0A0J9YXQ4 647 aa16.06■□□□□ 0.16
SNX1-211ENST00000560829 AIMP1Q12904 312 aaKnown RBP16.06■□□□□ 0.16
SNX1-211ENST00000560829 BMP2KLQ5H9B9 411 aa16.06■□□□□ 0.16
SNX1-211ENST00000560829 MTX1Q13505 466 aa16.05■□□□□ 0.16
SNX1-211ENST00000560829 RIC3Q7Z5B4 369 aa16.05■□□□□ 0.16
SNX1-211ENST00000560829 NBPF26B4DH59 902 aa16.05■□□□□ 0.16
SNX1-211ENST00000560829 POLA2Q14181 598 aa16.05■□□□□ 0.16
SNX1-211ENST00000560829 NBPF14Q5TI25 921 aa16.05■□□□□ 0.16
SNX1-211ENST00000560829 NBPF10Q6P3W6 841 aaKnown RBP16.05■□□□□ 0.16
SNX1-211ENST00000560829 ANKRD13DQ6ZTN6 518 aa16.05■□□□□ 0.16
SNX1-211ENST00000560829 NBPF15Q8N660 670 aa16.05■□□□□ 0.16
SNX1-211ENST00000560829 CERKQ8TCT0 537 aa16.05■□□□□ 0.16
SNX1-211ENST00000560829 METTL22Q9BUU2 404 aaPredicted RBP16.05■□□□□ 0.16
SNX1-211ENST00000560829 IGKV5-2P06315 115 aa16.04■□□□□ 0.16
SNX1-211ENST00000560829 CWF19L2Q2TBE0 894 aaKnown RBP16.04■□□□□ 0.16
SNX1-211ENST00000560829 UNC5CLQ8IV45 518 aa16.04■□□□□ 0.16
SNX1-211ENST00000560829 PLEKHM2Q8IWE5 1019 aa16.04■□□□□ 0.16
SNX1-211ENST00000560829 TEX13AQ9BXU3 409 aaPredicted RBP16.04■□□□□ 0.16
SNX1-211ENST00000560829 ATG3Q9NT62 314 aa16.04■□□□□ 0.16
SNX1-211ENST00000560829 ZBTB47Q9UFB7 747 aaPredicted RBP16.04■□□□□ 0.16
SNX1-211ENST00000560829 SPATA31A6Q5VVP1 1343 aa16.04■□□□□ 0.16
SNX1-211ENST00000560829 PTCD1O75127 700 aaKnown RBP16.03■□□□□ 0.16
SNX1-211ENST00000560829 NEXNQ0ZGT2 675 aa16.03■□□□□ 0.16
SNX1-211ENST00000560829 DDB1Q16531 1140 aa16.03■□□□□ 0.16
SNX1-211ENST00000560829 IPO9Q96P70 1041 aaKnown RBP16.03■□□□□ 0.16
SNX1-211ENST00000560829 GRM8O00222 908 aa16.03■□□□□ 0.16
SNX1-211ENST00000560829 PPP1R42Q7Z4L9 355 aa16.03■□□□□ 0.16
SNX1-211ENST00000560829 PLBD2Q8NHP8 589 aa16.03■□□□□ 0.16
SNX1-211ENST00000560829 C9orf78Q9NZ63 289 aaPredicted RBP16.03■□□□□ 0.16
SNX1-211ENST00000560829 ASAP1Q9ULH1 1129 aa16.03■□□□□ 0.16
SNX1-211ENST00000560829 NEURL1BA8MQ27 555 aa16.02■□□□□ 0.16
SNX1-211ENST00000560829 NPM2Q86SE8 214 aaKnown RBP16.02■□□□□ 0.16
SNX1-211ENST00000560829 FNBP4Q8N3X1 1017 aaPredicted RBP16.02■□□□□ 0.16
SNX1-211ENST00000560829 BCL9LQ86UU0 1499 aa16.02■□□□□ 0.15
SNX1-211ENST00000560829 SEC24BO95487 1268 aa16.01■□□□□ 0.15
SNX1-211ENST00000560829 VPS72Q15906 364 aa16.01■□□□□ 0.15
SNX1-211ENST00000560829 MSH5O43196 834 aa16.01■□□□□ 0.15
SNX1-211ENST00000560829 PIP4K2AP48426 406 aaPredicted RBP16.01■□□□□ 0.15
SNX1-211ENST00000560829 AEBP2Q6ZN18 517 aaPredicted RBP16.01■□□□□ 0.15
SNX1-211ENST00000560829 EXOC6BQ9Y2D4 811 aa16.01■□□□□ 0.15
SNX1-211ENST00000560829 SRGAP3O43295 1099 aa16■□□□□ 0.15
SNX1-211ENST00000560829 RAB11FIP3O75154 756 aa16■□□□□ 0.15
SNX1-211ENST00000560829 A1BGP04217 495 aa16■□□□□ 0.15
SNX1-211ENST00000560829 GCKRQ14397 625 aa16■□□□□ 0.15
SNX1-211ENST00000560829 MYD88Q99836 296 aa16■□□□□ 0.15
SNX1-211ENST00000560829 LRRCC1Q9C099 1032 aa16■□□□□ 0.15
SNX1-211ENST00000560829 OSBPL3Q9H4L5 887 aa16■□□□□ 0.15
SNX1-211ENST00000560829 COL15A1P39059 1388 aa16■□□□□ 0.15
SNX1-211ENST00000560829 SMARCA5O60264 1052 aaPredicted RBP15.99■□□□□ 0.15
SNX1-211ENST00000560829 C16orf71Q8IYS4 520 aaPredicted RBP15.99■□□□□ 0.15
SNX1-211ENST00000560829 MARCH10Q8NA82 808 aaPredicted RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms