RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 ZBTB9Q96C00 473 aa13.71□□□□□ -0.21
CUX1-218ENST00000560541 LARP6Q9BRS8 491 aaKnown RBP13.71□□□□□ -0.21
CUX1-218ENST00000560541 ADAMTS13Q76LX8 1427 aa13.71□□□□□ -0.22
CUX1-218ENST00000560541 FLT4P35916 1363 aa13.71□□□□□ -0.22
CUX1-218ENST00000560541 DTNBO60941 627 aa13.71□□□□□ -0.22
CUX1-218ENST00000560541 USHBP1Q8N6Y0 703 aa13.71□□□□□ -0.22
CUX1-218ENST00000560541 USP31Q70CQ4 1352 aa13.7□□□□□ -0.22
CUX1-218ENST00000560541 DIP2BQ9P265 1576 aa13.7□□□□□ -0.22
CUX1-218ENST00000560541 PHAXQ9H814 394 aaKnown RBP13.7□□□□□ -0.22
CUX1-218ENST00000560541 CEBPAP49715 358 aaPredicted RBP13.7□□□□□ -0.22
CUX1-218ENST00000560541 NLRP6P59044 892 aa13.7□□□□□ -0.22
CUX1-218ENST00000560541 XPCQ01831 940 aaPredicted RBP13.7□□□□□ -0.22
CUX1-218ENST00000560541 LRSAM1Q6UWE0 723 aa13.7□□□□□ -0.22
CUX1-218ENST00000560541 BRD1O95696 1058 aa13.69□□□□□ -0.22
CUX1-218ENST00000560541 JARID2Q92833 1246 aaPredicted RBP13.69□□□□□ -0.22
CUX1-218ENST00000560541 RGPD1P0DJD0 1748 aa13.69□□□□□ -0.22
CUX1-218ENST00000560541 GNAT3A8MTJ3 354 aa13.69□□□□□ -0.22
CUX1-218ENST00000560541 UBTFL1P0CB47 393 aaPredicted RBP13.69□□□□□ -0.22
CUX1-218ENST00000560541 IL17REQ8NFR9 667 aa13.69□□□□□ -0.22
CUX1-218ENST00000560541 USP44Q9H0E7 712 aa13.69□□□□□ -0.22
CUX1-218ENST00000560541 SBNO1A3KN83 1393 aa13.69□□□□□ -0.22
CUX1-218ENST00000560541 EIF2S2P20042 333 aaKnown RBP13.69□□□□□ -0.22
CUX1-218ENST00000560541 TSC1Q92574 1164 aa13.69□□□□□ -0.22
CUX1-218ENST00000560541 AMOTL2Q9Y2J4 779 aa13.69□□□□□ -0.22
CUX1-218ENST00000560541 IGSF1Q8N6C5 1336 aa13.68□□□□□ -0.22
CUX1-218ENST00000560541 TEX2Q8IWB9 1127 aa13.68□□□□□ -0.22
CUX1-218ENST00000560541 MPNDQ8N594 471 aa13.68□□□□□ -0.22
CUX1-218ENST00000560541 GADD45BO75293 160 aaPredicted RBP13.68□□□□□ -0.22
CUX1-218ENST00000560541 SURF6O75683 361 aaKnown RBP13.68□□□□□ -0.22
CUX1-218ENST00000560541 C14orf37Q86TY3 774 aa13.68□□□□□ -0.22
CUX1-218ENST00000560541 CCDC94Q9BW85 323 aaPredicted RBP13.68□□□□□ -0.22
CUX1-218ENST00000560541 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.68□□□□□ -0.22
CUX1-218ENST00000560541 PDLIM2Q96JY6 352 aa13.67□□□□□ -0.22
CUX1-218ENST00000560541 KDRP35968 1356 aa13.67□□□□□ -0.22
CUX1-218ENST00000560541 MCM2P49736 904 aa13.67□□□□□ -0.22
CUX1-218ENST00000560541 CUL4AQ13619 759 aa13.67□□□□□ -0.22
CUX1-218ENST00000560541 HDGFL1Q5TGJ6 251 aa13.67□□□□□ -0.22
CUX1-218ENST00000560541 PTPRUQ92729 1446 aa13.67□□□□□ -0.22
CUX1-218ENST00000560541 PPP1R42Q7Z4L9 355 aa13.67□□□□□ -0.22
CUX1-218ENST00000560541 CHMP4CQ96CF2 233 aa13.66□□□□□ -0.22
CUX1-218ENST00000560541 MBD3O95983 291 aa13.66□□□□□ -0.22
CUX1-218ENST00000560541 ANXA1P04083 346 aa13.66□□□□□ -0.22
CUX1-218ENST00000560541 IRX3P78415 501 aaPredicted RBP13.66□□□□□ -0.22
CUX1-218ENST00000560541 NOL7Q9UMY1 257 aaKnown RBP13.66□□□□□ -0.22
CUX1-218ENST00000560541 SSH2Q76I76 1423 aa13.66□□□□□ -0.22
CUX1-218ENST00000560541 SOS1Q07889 1333 aaPredicted RBP13.65□□□□□ -0.22
CUX1-218ENST00000560541 SRGAP3O43295 1099 aa13.65□□□□□ -0.22
CUX1-218ENST00000560541 KIF20AO95235 890 aa13.65□□□□□ -0.22
CUX1-218ENST00000560541 STAP2Q9UGK3 403 aa13.65□□□□□ -0.22
CUX1-218ENST00000560541 TTC21AQ8NDW8 1320 aa13.65□□□□□ -0.22
CUX1-218ENST00000560541 NALCNQ8IZF0 1738 aa13.65□□□□□ -0.22
CUX1-218ENST00000560541 CPA1P15085 419 aa13.65□□□□□ -0.23
CUX1-218ENST00000560541 HOXC9P31274 260 aa13.65□□□□□ -0.23
CUX1-218ENST00000560541 ANAPC15P60006 121 aa13.65□□□□□ -0.23
CUX1-218ENST00000560541 TOPAZ1Q8N9V7 1692 aa13.64□□□□□ -0.23
CUX1-218ENST00000560541 NBPF7P0C2Y1 421 aaPredicted RBP13.64□□□□□ -0.23
CUX1-218ENST00000560541 TAF7Q15545 349 aaPredicted RBP13.64□□□□□ -0.23
CUX1-218ENST00000560541 USP48Q86UV5 1035 aa13.64□□□□□ -0.23
CUX1-218ENST00000560541 SPDYE4A6NLX3 237 aa13.64□□□□□ -0.23
CUX1-218ENST00000560541 SRCIN1Q9C0H9 1055 aa13.64□□□□□ -0.23
CUX1-218ENST00000560541 SPG7Q9UQ90 795 aa13.64□□□□□ -0.23
CUX1-218ENST00000560541 CWC27Q6UX04 472 aaKnown RBP13.63□□□□□ -0.23
CUX1-218ENST00000560541 RHPN1Q8TCX5 695 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 INTS4Q96HW7 963 aaKnown RBP13.63□□□□□ -0.23
CUX1-218ENST00000560541 MTERF4Q7Z6M4 381 aaKnown RBP13.63□□□□□ -0.23
CUX1-218ENST00000560541 TSPY26PQ9H489 355 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 FMN2Q9NZ56 1722 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 PTMAP06454 111 aaKnown RBP13.63□□□□□ -0.23
CUX1-218ENST00000560541 HSPA4P34932 840 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 RASEFQ8IZ41 740 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 ABTB2Q8N961 1025 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 SSH3Q8TE77 659 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 GTPBP4Q9BZE4 634 aaKnown RBP13.63□□□□□ -0.23
CUX1-218ENST00000560541 ZKSCAN5Q9Y2L8 839 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 MAP3K5Q99683 1374 aa13.63□□□□□ -0.23
CUX1-218ENST00000560541 FAM177BA6PVY3 158 aa13.62□□□□□ -0.23
CUX1-218ENST00000560541 PI4K2BQ8TCG2 481 aa13.62□□□□□ -0.23
CUX1-218ENST00000560541 UBR1Q8IWV7 1749 aa13.62□□□□□ -0.23
CUX1-218ENST00000560541 LETM1O95202 739 aaPredicted RBP13.62□□□□□ -0.23
CUX1-218ENST00000560541 KCNJ4P48050 445 aa13.62□□□□□ -0.23
CUX1-218ENST00000560541 HS1BP3Q53T59 392 aa13.62□□□□□ -0.23
CUX1-218ENST00000560541 SAMD1Q6SPF0 538 aaPredicted RBP13.62□□□□□ -0.23
CUX1-218ENST00000560541 RGS22Q8NE09 1264 aa13.62□□□□□ -0.23
CUX1-218ENST00000560541 DDX54Q8TDD1 881 aaKnown RBP13.62□□□□□ -0.23
CUX1-218ENST00000560541 CNPY2Q9Y2B0 182 aa13.62□□□□□ -0.23
CUX1-218ENST00000560541 EID1Q9Y6B2 187 aa13.62□□□□□ -0.23
CUX1-218ENST00000560541 PLEKHG1Q9ULL1 1385 aa13.61□□□□□ -0.23
CUX1-218ENST00000560541 CHPF2Q9P2E5 772 aa13.61□□□□□ -0.23
CUX1-218ENST00000560541 XRN1Q8IZH2 1706 aaKnown RBP13.61□□□□□ -0.23
CUX1-218ENST00000560541 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.61□□□□□ -0.23
CUX1-218ENST00000560541 KCNQ3O43525 872 aa13.61□□□□□ -0.23
CUX1-218ENST00000560541 OS9Q13438 667 aaPredicted RBP13.61□□□□□ -0.23
CUX1-218ENST00000560541 SNX14Q9Y5W7 946 aa13.61□□□□□ -0.23
CUX1-218ENST00000560541 RGPD8O14715 1765 aaPredicted RBP13.61□□□□□ -0.23
CUX1-218ENST00000560541 FAM208AQ9UK61 1670 aaKnown RBP13.61□□□□□ -0.23
CUX1-218ENST00000560541 WDR33Q9C0J8 1336 aaKnown RBP13.61□□□□□ -0.23
CUX1-218ENST00000560541 PI4KAP2A4QPH2 592 aa13.61□□□□□ -0.23
CUX1-218ENST00000560541 HTATSF1O43719 755 aaKnown RBP13.61□□□□□ -0.23
CUX1-218ENST00000560541 AK2P54819 239 aa13.61□□□□□ -0.23
CUX1-218ENST00000560541 PI4KAP1Q8N8J0 262 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 148.7 ms