RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 RARSP54136 660 aaKnown RBP8.25□□□□□ -1.09
SPG11-221ENST00000560299 MKRN4PQ13434 485 aaPredicted RBP8.25□□□□□ -1.09
SPG11-221ENST00000560299 TTC5Q8N0Z6 440 aa8.25□□□□□ -1.09
SPG11-221ENST00000560299 NFATC2IPQ8NCF5 419 aa8.25□□□□□ -1.09
SPG11-221ENST00000560299 DCBLD2Q96PD2 775 aa8.25□□□□□ -1.09
SPG11-221ENST00000560299 SCN11AQ9UI33 1791 aa8.25□□□□□ -1.09
SPG11-221ENST00000560299 LY75O60449 1722 aa8.24□□□□□ -1.09
SPG11-221ENST00000560299 IPO8O15397 1037 aaKnown RBP8.24□□□□□ -1.09
SPG11-221ENST00000560299 VAMP4O75379 141 aa8.24□□□□□ -1.09
SPG11-221ENST00000560299 HOXB7P09629 217 aa8.24□□□□□ -1.09
SPG11-221ENST00000560299 CLCN6P51797 869 aa8.24□□□□□ -1.09
SPG11-221ENST00000560299 RRP1P56182 461 aaKnown RBP8.24□□□□□ -1.09
SPG11-221ENST00000560299 ERICH6BQ5W0A0 696 aa8.24□□□□□ -1.09
SPG11-221ENST00000560299 SMC4Q9NTJ3 1288 aa8.24□□□□□ -1.09
SPG11-221ENST00000560299 MIS18AQ9NYP9 233 aa8.24□□□□□ -1.09
SPG11-221ENST00000560299 RNF123Q5XPI4 1314 aa8.24□□□□□ -1.09
SPG11-221ENST00000560299 ELL2O00472 640 aaPredicted RBP8.23□□□□□ -1.09
SPG11-221ENST00000560299 PRIM1P49642 420 aaKnown RBP8.23□□□□□ -1.09
SPG11-221ENST00000560299 TXNRD1Q16881 649 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 NBPF14Q5TI25 921 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 CCDC30Q5VVM6 783 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 ZNF790Q6PG37 636 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 PROM2Q8N271 834 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 C8orf58Q8NAV2 365 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 STK31Q9BXU1 1019 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 TMOD3Q9NYL9 352 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 GTF3C3Q9Y5Q9 886 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 BTAF1O14981 1849 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 KIF16BQ96L93 1317 aa8.23□□□□□ -1.09
SPG11-221ENST00000560299 PAPPAQ13219 1627 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 KDM6AO15550 1401 aaPredicted RBP8.22□□□□□ -1.09
SPG11-221ENST00000560299 ZBTB22O15209 634 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 KCNQ2O43526 872 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 BRPF1P55201 1214 aaPredicted RBP8.22□□□□□ -1.09
SPG11-221ENST00000560299 EIF4A1P60842 406 aaKnown RBP8.22□□□□□ -1.09
SPG11-221ENST00000560299 EN1Q05925 392 aaPredicted RBP8.22□□□□□ -1.09
SPG11-221ENST00000560299 FKBP8Q14318 412 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 FAM182BQ5T319 152 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 DEFB132Q7Z7B7 95 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 VSIG10Q8N0Z9 540 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 TSPYL6Q8N831 410 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 FRAT1Q92837 279 aaPredicted RBP8.22□□□□□ -1.09
SPG11-221ENST00000560299 DOT1LQ8TEK3 1739 aa8.22□□□□□ -1.09
SPG11-221ENST00000560299 QSER1Q2KHR3 1735 aa8.21□□□□□ -1.09
SPG11-221ENST00000560299 NUP188Q5SRE5 1749 aa8.21□□□□□ -1.09
SPG11-221ENST00000560299 TOGARAM1Q9Y4F4 1720 aa8.21□□□□□ -1.09
SPG11-221ENST00000560299 BCAR3O75815 825 aa8.21□□□□□ -1.1
SPG11-221ENST00000560299 EZH2Q15910 746 aaKnown RBP8.21□□□□□ -1.1
SPG11-221ENST00000560299 ZKSCAN2Q63HK3 967 aa8.21□□□□□ -1.1
SPG11-221ENST00000560299 SSH1Q8WYL5 1049 aa8.21□□□□□ -1.1
SPG11-221ENST00000560299 PIGBQ92521 554 aa8.21□□□□□ -1.1
SPG11-221ENST00000560299 FMNL2Q96PY5 1086 aa8.21□□□□□ -1.1
SPG11-221ENST00000560299 ITGB4P16144 1822 aa8.21□□□□□ -1.1
SPG11-221ENST00000560299 CACNA1FO60840 1977 aa8.21□□□□□ -1.1
SPG11-221ENST00000560299 SIPA1L3O60292 1781 aaPredicted RBP8.2□□□□□ -1.1
SPG11-221ENST00000560299 SNRPA1P09661 255 aaKnown RBP8.2□□□□□ -1.1
SPG11-221ENST00000560299 PDE3AQ14432 1141 aa8.2□□□□□ -1.1
SPG11-221ENST00000560299 HDGFL1Q5TGJ6 251 aa8.2□□□□□ -1.1
SPG11-221ENST00000560299 FTSJ3Q8IY81 847 aaKnown RBP8.2□□□□□ -1.1
SPG11-221ENST00000560299 FLAD1Q8NFF5 587 aa8.2□□□□□ -1.1
SPG11-221ENST00000560299 SLC16A10Q8TF71 515 aa8.2□□□□□ -1.1
SPG11-221ENST00000560299 ARHGAP45Q92619 1136 aa8.2□□□□□ -1.1
SPG11-221ENST00000560299 SYTL4Q96C24 671 aaPredicted RBP8.2□□□□□ -1.1
SPG11-221ENST00000560299 BCL2L13Q9BXK5 485 aa8.2□□□□□ -1.1
SPG11-221ENST00000560299 TEX13AQ9BXU3 409 aaPredicted RBP8.2□□□□□ -1.1
SPG11-221ENST00000560299 FARP1Q9Y4F1 1045 aaPredicted RBP8.2□□□□□ -1.1
SPG11-221ENST00000560299 KDM3BQ7LBC6 1761 aa8.2□□□□□ -1.1
SPG11-221ENST00000560299 RGL2O15211 777 aa8.19□□□□□ -1.1
SPG11-221ENST00000560299 GIGYF1O75420 1035 aaPredicted RBP8.19□□□□□ -1.1
SPG11-221ENST00000560299 EIF2S2P20042 333 aaKnown RBP8.19□□□□□ -1.1
SPG11-221ENST00000560299 SLC39A6Q13433 755 aa8.19□□□□□ -1.1
SPG11-221ENST00000560299 KRT24Q2M2I5 525 aa8.19□□□□□ -1.1
SPG11-221ENST00000560299 RC3H1Q5TC82 1133 aaKnown RBP8.19□□□□□ -1.1
SPG11-221ENST00000560299 ATF7IPQ6VMQ6 1270 aa8.19□□□□□ -1.1
SPG11-221ENST00000560299 PTF1AQ7RTS3 328 aa8.19□□□□□ -1.1
SPG11-221ENST00000560299 MRPL50Q8N5N7 158 aaKnown RBP8.19□□□□□ -1.1
SPG11-221ENST00000560299 API5Q9BZZ5 524 aaKnown RBP8.19□□□□□ -1.1
SPG11-221ENST00000560299 CHMP4BQ9H444 224 aaKnown RBP8.19□□□□□ -1.1
SPG11-221ENST00000560299 ATG3Q9NT62 314 aa8.19□□□□□ -1.1
SPG11-221ENST00000560299 NOB1Q9ULX3 412 aaKnown RBP8.19□□□□□ -1.1
SPG11-221ENST00000560299 PALLDQ8WX93 1383 aa8.19□□□□□ -1.1
SPG11-221ENST00000560299 SRCAPQ6ZRS2 3230 aa8.19□□□□□ -1.1
SPG11-221ENST00000560299 C5P01031 1676 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 LOC102724428A0A0B4J2F2 783 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 KCNQ3O43525 872 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 PLIN1O60240 522 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 SIK1P57059 783 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 AAMPQ13685 434 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 SLC15A2Q16348 729 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 DZIP1LQ8IYY4 767 aaKnown RBP8.18□□□□□ -1.1
SPG11-221ENST00000560299 ZNF496Q96IT1 587 aaPredicted RBP8.18□□□□□ -1.1
SPG11-221ENST00000560299 DBF4Q9UBU7 674 aaPredicted RBP8.18□□□□□ -1.1
SPG11-221ENST00000560299 PTPRCP08575 1304 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 HEG1Q9ULI3 1381 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 LRP5O75197 1615 aa8.18□□□□□ -1.1
SPG11-221ENST00000560299 COL24A1Q17RW2 1714 aa8.17□□□□□ -1.1
SPG11-221ENST00000560299 IRX6P78412 446 aaPredicted RBP8.17□□□□□ -1.1
SPG11-221ENST00000560299 ACSBG1Q96GR2 724 aa8.17□□□□□ -1.1
SPG11-221ENST00000560299 LRRC4BQ9NT99 713 aa8.17□□□□□ -1.1
SPG11-221ENST00000560299 HYPKQ9NX55 129 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms