RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 PCGF6Q9BYE7 350 aa17.23■□□□□ 0.35
SHMT2-223ENST00000556689 ZC3H4Q9UPT8 1303 aaKnown RBP17.22■□□□□ 0.35
SHMT2-223ENST00000556689 BRCA1P38398 1863 aaKnown RBP17.22■□□□□ 0.35
SHMT2-223ENST00000556689 SERPINB2P05120 415 aa17.22■□□□□ 0.35
SHMT2-223ENST00000556689 LMNB1P20700 586 aa17.22■□□□□ 0.35
SHMT2-223ENST00000556689 TTLL6Q8N841 843 aa17.22■□□□□ 0.35
SHMT2-223ENST00000556689 ARFGEF1Q9Y6D6 1849 aa17.21■□□□□ 0.35
SHMT2-223ENST00000556689 GLTPD2A6NH11 291 aa17.21■□□□□ 0.35
SHMT2-223ENST00000556689 VEGFAP15692 232 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-223ENST00000556689 RASSF7Q02833 373 aa17.21■□□□□ 0.35
SHMT2-223ENST00000556689 VSIG10Q8N0Z9 540 aa17.21■□□□□ 0.35
SHMT2-223ENST00000556689 HMOX1P09601 288 aa17.2■□□□□ 0.34
SHMT2-223ENST00000556689 COL13A1Q5TAT6 717 aaPredicted RBP17.2■□□□□ 0.34
SHMT2-223ENST00000556689 BCL2L12Q9HB09 334 aa17.2■□□□□ 0.34
SHMT2-223ENST00000556689 ZBTB1Q9Y2K1 713 aa17.2■□□□□ 0.34
SHMT2-223ENST00000556689 H0YIN7 160 aa17.19■□□□□ 0.34
SHMT2-223ENST00000556689 C2CD5Q86YS7 1000 aa17.19■□□□□ 0.34
SHMT2-223ENST00000556689 COL15A1P39059 1388 aa17.18■□□□□ 0.34
SHMT2-223ENST00000556689 CANXP27824 592 aaKnown RBP17.18■□□□□ 0.34
SHMT2-223ENST00000556689 MTHFSDQ2M296 383 aaKnown RBP17.18■□□□□ 0.34
SHMT2-223ENST00000556689 AMER1Q5JTC6 1135 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-223ENST00000556689 STARD3NLO95772 234 aa17.17■□□□□ 0.34
SHMT2-223ENST00000556689 PRELPP51888 382 aa17.17■□□□□ 0.34
SHMT2-223ENST00000556689 TJP1Q07157 1748 aa17.17■□□□□ 0.34
SHMT2-223ENST00000556689 WDR90Q96KV7 1748 aa17.17■□□□□ 0.34
SHMT2-223ENST00000556689 BICDL1Q6ZP65 573 aa17.16■□□□□ 0.34
SHMT2-223ENST00000556689 A0A087WZG4 1122 aa17.15■□□□□ 0.34
SHMT2-223ENST00000556689 EIF5P55010 431 aaKnown RBP17.15■□□□□ 0.34
SHMT2-223ENST00000556689 DPY19L2Q6NUT2 758 aa17.15■□□□□ 0.34
SHMT2-223ENST00000556689 TTC5Q8N0Z6 440 aa17.15■□□□□ 0.34
SHMT2-223ENST00000556689 ADAMTS7Q9UKP4 1686 aa17.14■□□□□ 0.33
SHMT2-223ENST00000556689 PCNTO95613 3336 aa17.14■□□□□ 0.33
SHMT2-223ENST00000556689 NFKBIEO00221 500 aa17.14■□□□□ 0.33
SHMT2-223ENST00000556689 DIAPH1O60610 1272 aaKnown RBP17.14■□□□□ 0.33
SHMT2-223ENST00000556689 ZNF622Q969S3 477 aaKnown RBP eCLIP17.14■□□□□ 0.33
SHMT2-223ENST00000556689 PDZRN3Q9UPQ7 1066 aa17.14■□□□□ 0.33
SHMT2-223ENST00000556689 SCN11AQ9UI33 1791 aa17.14■□□□□ 0.33
SHMT2-223ENST00000556689 PDE6BP35913 854 aa17.13■□□□□ 0.33
SHMT2-223ENST00000556689 TNS4Q8IZW8 715 aa17.13■□□□□ 0.33
SHMT2-223ENST00000556689 BRIP1Q9BX63 1249 aa17.13■□□□□ 0.33
SHMT2-223ENST00000556689 TEX13AQ9BXU3 409 aaPredicted RBP17.13■□□□□ 0.33
SHMT2-223ENST00000556689 SBF1O95248 1867 aa17.13■□□□□ 0.33
SHMT2-223ENST00000556689 TBC1D9BQ66K14 1250 aa17.12■□□□□ 0.33
SHMT2-223ENST00000556689 MRC1P22897 1456 aa17.12■□□□□ 0.33
SHMT2-223ENST00000556689 TNRC6CQ9HCJ0 1690 aaKnown RBP17.11■□□□□ 0.33
SHMT2-223ENST00000556689 POTECB2RU33 542 aa17.11■□□□□ 0.33
SHMT2-223ENST00000556689 C21orf2O43822 256 aa17.1■□□□□ 0.33
SHMT2-223ENST00000556689 CAPN15O75808 1086 aa17.1■□□□□ 0.33
SHMT2-223ENST00000556689 TEFQ10587 303 aa17.1■□□□□ 0.33
SHMT2-223ENST00000556689 ERFEQ4G0M1 354 aa17.1■□□□□ 0.33
SHMT2-223ENST00000556689 NPM2Q86SE8 214 aaKnown RBP17.1■□□□□ 0.33
SHMT2-223ENST00000556689 ZNF496Q96IT1 587 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-223ENST00000556689 ZNF219Q9P2Y4 722 aaPredicted RBP17.1■□□□□ 0.33
SHMT2-223ENST00000556689 TBC1D2BQ9UPU7 963 aa17.1■□□□□ 0.33
SHMT2-223ENST00000556689 CARMIL3Q8ND23 1372 aa17.1■□□□□ 0.33
SHMT2-223ENST00000556689 ZNF790Q6PG37 636 aa17.09■□□□□ 0.33
SHMT2-223ENST00000556689 IL17REQ8NFR9 667 aa17.09■□□□□ 0.33
SHMT2-223ENST00000556689 ZNF330Q9Y3S2 320 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-223ENST00000556689 AFDNP55196 1824 aaKnown RBP17.08■□□□□ 0.33
SHMT2-223ENST00000556689 NRXN2Q9P2S2 1712 aa17.08■□□□□ 0.32
SHMT2-223ENST00000556689 GNAT3A8MTJ3 354 aa17.08■□□□□ 0.32
SHMT2-223ENST00000556689 PER1O15534 1290 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-223ENST00000556689 HSPA1AP0DMV8 641 aaKnown RBP17.08■□□□□ 0.32
SHMT2-223ENST00000556689 HSPA1BP0DMV9 641 aaKnown RBP17.08■□□□□ 0.32
SHMT2-223ENST00000556689 IL6STP40189 918 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-223ENST00000556689 CC2D1BQ5T0F9 858 aaKnown RBP17.08■□□□□ 0.32
SHMT2-223ENST00000556689 PRR5LQ6MZQ0 368 aa17.08■□□□□ 0.32
SHMT2-223ENST00000556689 CCDC24Q8N4L8 307 aa17.08■□□□□ 0.32
SHMT2-223ENST00000556689 SETDB2Q96T68 719 aa17.08■□□□□ 0.32
SHMT2-223ENST00000556689 HEG1Q9ULI3 1381 aa17.07■□□□□ 0.32
SHMT2-223ENST00000556689 NPHP1O15259 732 aa17.07■□□□□ 0.32
SHMT2-223ENST00000556689 GAS2L2Q8NHY3 880 aa17.07■□□□□ 0.32
SHMT2-223ENST00000556689 CNKSR1Q969H4 720 aa17.07■□□□□ 0.32
SHMT2-223ENST00000556689 KIF7Q2M1P5 1343 aa17.06■□□□□ 0.32
SHMT2-223ENST00000556689 U2SURPO15042 1029 aaKnown RBP17.06■□□□□ 0.32
SHMT2-223ENST00000556689 A1BGP04217 495 aa17.06■□□□□ 0.32
SHMT2-223ENST00000556689 FMNL2Q96PY5 1086 aa17.06■□□□□ 0.32
SHMT2-223ENST00000556689 STYK1Q6J9G0 422 aa17.05■□□□□ 0.32
SHMT2-223ENST00000556689 CNBD1Q8NA66 436 aa17.05■□□□□ 0.32
SHMT2-223ENST00000556689 TAOK3Q9H2K8 898 aa17.05■□□□□ 0.32
SHMT2-223ENST00000556689 LTBP3Q9NS15 1303 aa17.04■□□□□ 0.32
SHMT2-223ENST00000556689 CAMTA2O94983 1202 aa17.04■□□□□ 0.32
SHMT2-223ENST00000556689 ST5P78524 1137 aa17.04■□□□□ 0.32
SHMT2-223ENST00000556689 SOGA3Q5TF21 947 aa17.04■□□□□ 0.32
SHMT2-223ENST00000556689 CHADLQ6NUI6 762 aa17.04■□□□□ 0.32
SHMT2-223ENST00000556689 CCER1Q8TC90 406 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-223ENST00000556689 DDNO94850 711 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-223ENST00000556689 SRGNP10124 158 aa17.03■□□□□ 0.32
SHMT2-223ENST00000556689 MASTLQ96GX5 879 aa17.03■□□□□ 0.32
SHMT2-223ENST00000556689 CREBZFQ9NS37 354 aa17.03■□□□□ 0.32
SHMT2-223ENST00000556689 BTBD11A6QL63 1104 aa17.02■□□□□ 0.32
SHMT2-223ENST00000556689 PRPF40BQ6NWY9 871 aaKnown RBP17.02■□□□□ 0.32
SHMT2-223ENST00000556689 DZIP3Q86Y13 1208 aaKnown RBP17.02■□□□□ 0.32
SHMT2-223ENST00000556689 DLEC1Q9Y238 1755 aa17.02■□□□□ 0.31
SHMT2-223ENST00000556689 CNGB1Q14028 1251 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-223ENST00000556689 KCNQ3O43525 872 aa17■□□□□ 0.31
SHMT2-223ENST00000556689 CLEC4GQ6UXB4 293 aa17■□□□□ 0.31
SHMT2-223ENST00000556689 MKRN1Q9UHC7 482 aaKnown RBP17■□□□□ 0.31
SHMT2-223ENST00000556689 USP16Q9Y5T5 823 aa17■□□□□ 0.31
SHMT2-223ENST00000556689 IQCA1LA6NCM1 817 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 94.4 ms