RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 OVOS2A0A0J9YW53 1432 aa11.46□□□□□ -0.57
SYNE2-213ENST00000554805 OVOS2Q6IE36 1432 aa11.46□□□□□ -0.57
SYNE2-213ENST00000554805 HS1BP3Q53T59 392 aa11.46□□□□□ -0.57
SYNE2-213ENST00000554805 ZKSCAN5Q9Y2L8 839 aa11.46□□□□□ -0.57
SYNE2-213ENST00000554805 THEMISQ8N1K5 641 aaPredicted RBP11.46□□□□□ -0.58
SYNE2-213ENST00000554805 KIF1BPQ96EK5 621 aa11.46□□□□□ -0.58
SYNE2-213ENST00000554805 STAP2Q9UGK3 403 aa11.46□□□□□ -0.58
SYNE2-213ENST00000554805 SOS1Q07889 1333 aaPredicted RBP11.46□□□□□ -0.58
SYNE2-213ENST00000554805 HTATSF1O43719 755 aaKnown RBP11.45□□□□□ -0.58
SYNE2-213ENST00000554805 RAB11FIP3O75154 756 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 CPA1P15085 419 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 IL25Q9H293 177 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 IGSF1Q8N6C5 1336 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 HOXC9P31274 260 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 TEFQ10587 303 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 CNPY2Q9Y2B0 182 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 PI4KAP2A4QPH2 592 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 PI4KAP1Q8N8J0 262 aa11.45□□□□□ -0.58
SYNE2-213ENST00000554805 SPATA31D1Q6ZQQ2 1576 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 CSPP1Q1MSJ5 1256 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 PDLIM2Q96JY6 352 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 C9orf78Q9NZ63 289 aaPredicted RBP11.44□□□□□ -0.58
SYNE2-213ENST00000554805 UQCRHLA0A096LP55 91 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 UQCRHP07919 91 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 NBPF7P0C2Y1 421 aaPredicted RBP11.44□□□□□ -0.58
SYNE2-213ENST00000554805 CASTP20810 708 aaKnown RBP11.44□□□□□ -0.58
SYNE2-213ENST00000554805 HSPA4P34932 840 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 CHPF2Q9P2E5 772 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 SALL3Q9BXA9 1300 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 VPS37CA5D8V6 355 aaPredicted RBP11.44□□□□□ -0.58
SYNE2-213ENST00000554805 SSH3Q8TE77 659 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 DNAAF4Q8WXU2 420 aa11.44□□□□□ -0.58
SYNE2-213ENST00000554805 USP31Q70CQ4 1352 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 MAP3K5Q99683 1374 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 IFIT2P09913 472 aaKnown RBP11.43□□□□□ -0.58
SYNE2-213ENST00000554805 AK2P54819 239 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 KIAA2012Q0VF49 1180 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 CCDC83Q8IWF9 413 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 CLASRPQ8N2M8 674 aaKnown RBP11.43□□□□□ -0.58
SYNE2-213ENST00000554805 USP25Q9UHP3 1055 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 CHMP3Q9Y3E7 222 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.43□□□□□ -0.58
SYNE2-213ENST00000554805 SNX14Q9Y5W7 946 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 TECPR2O15040 1411 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 HSP90AB4PQ58FF6 505 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 RUFY2Q8WXA3 655 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 LIMCH1Q9UPQ0 1083 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 SGSM2O43147 1006 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 PRPF40BQ6NWY9 871 aaKnown RBP11.43□□□□□ -0.58
SYNE2-213ENST00000554805 RASEFQ8IZ41 740 aa11.43□□□□□ -0.58
SYNE2-213ENST00000554805 JAKMIP1Q96N16 626 aaKnown RBP11.43□□□□□ -0.58
SYNE2-213ENST00000554805 ZNF830Q96NB3 372 aaPredicted RBP11.43□□□□□ -0.58
SYNE2-213ENST00000554805 STX6O43752 255 aa11.42□□□□□ -0.58
SYNE2-213ENST00000554805 ZSCAN22P10073 491 aaPredicted RBP11.42□□□□□ -0.58
SYNE2-213ENST00000554805 KCNA6P17658 529 aa11.42□□□□□ -0.58
SYNE2-213ENST00000554805 GPATCH3Q96I76 525 aa11.42□□□□□ -0.58
SYNE2-213ENST00000554805 LGR6Q9HBX8 967 aa11.42□□□□□ -0.58
SYNE2-213ENST00000554805 ATP6V1DQ9Y5K8 247 aa11.42□□□□□ -0.58
SYNE2-213ENST00000554805 KCNQ3O43525 872 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 ZNF500O60304 480 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-213ENST00000554805 HCLS1P14317 486 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-213ENST00000554805 AGLP35573 1532 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 CCDC183Q5T5S1 534 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 PDRG1Q9NUG6 133 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 RAD50Q92878 1312 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 ZNF530Q6P9A1 599 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-213ENST00000554805 ADAMTS13Q76LX8 1427 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 AOX1Q06278 1338 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 GLRX3O76003 335 aaKnown RBP11.41□□□□□ -0.58
SYNE2-213ENST00000554805 SYT1P21579 422 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 MPRIPQ6WCQ1 1025 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 PDCL3Q9H2J4 239 aa11.41□□□□□ -0.58
SYNE2-213ENST00000554805 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.41□□□□□ -0.58
SYNE2-213ENST00000554805 PA2G4Q9UQ80 394 aaKnown RBP11.41□□□□□ -0.58
SYNE2-213ENST00000554805 SSH2Q76I76 1423 aa11.4□□□□□ -0.58
SYNE2-213ENST00000554805 ITSN1Q15811 1721 aa11.4□□□□□ -0.58
SYNE2-213ENST00000554805 BTBD11A6QL63 1104 aa11.4□□□□□ -0.58
SYNE2-213ENST00000554805 MCM5P33992 734 aa11.4□□□□□ -0.58
SYNE2-213ENST00000554805 AIMP1Q12904 312 aaKnown RBP11.4□□□□□ -0.58
SYNE2-213ENST00000554805 ZKSCAN1P17029 563 aaPredicted RBP11.4□□□□□ -0.58
SYNE2-213ENST00000554805 PI4K2BQ8TCG2 481 aa11.4□□□□□ -0.58
SYNE2-213ENST00000554805 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.4□□□□□ -0.58
SYNE2-213ENST00000554805 KDRP35968 1356 aa11.4□□□□□ -0.58
SYNE2-213ENST00000554805 CEP170BQ9Y4F5 1589 aaPredicted RBP11.4□□□□□ -0.59
SYNE2-213ENST00000554805 GJB2P29033 226 aa11.4□□□□□ -0.59
SYNE2-213ENST00000554805 RUFY3Q7L099 469 aa11.4□□□□□ -0.59
SYNE2-213ENST00000554805 AACSQ86V21 672 aa11.4□□□□□ -0.59
SYNE2-213ENST00000554805 CYP46A1Q9Y6A2 500 aa11.4□□□□□ -0.59
SYNE2-213ENST00000554805 C3P01024 1663 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 MON2Q7Z3U7 1717 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 GIMAP6Q6P9H5 292 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 ANKLE2Q86XL3 938 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 CHMP4AQ9BY43 222 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 LSG1Q9H089 658 aaKnown RBP11.39□□□□□ -0.59
SYNE2-213ENST00000554805 ADCY5O95622 1261 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 F13A1P00488 732 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 NECAB1Q8N987 351 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 NRXN3Q9Y4C0 1643 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 KIF13AQ9H1H9 1805 aa11.39□□□□□ -0.59
SYNE2-213ENST00000554805 EIF4A1P60842 406 aaKnown RBP11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms