RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 EIF3CQ99613 913 aaKnown RBP11.31□□□□□ -0.6
SIX4-202ENST00000554079 MAP2K2P36507 400 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 CORO7P57737 925 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 SEMA3FQ13275 785 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 CCDC144BQ3MJ40 725 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 FOXD4L6Q3SYB3 417 aaPredicted RBP11.3□□□□□ -0.6
SIX4-202ENST00000554079 TTC22Q5TAA0 569 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 INTS3Q68E01 1043 aaKnown RBP11.3□□□□□ -0.6
SIX4-202ENST00000554079 FOXD4L3Q6VB84 417 aaPredicted RBP11.3□□□□□ -0.6
SIX4-202ENST00000554079 TICAM2Q86XR7 235 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 CCDC144CPQ8IYA2 1237 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 ZCCHC17Q9NP64 241 aaKnown RBP11.3□□□□□ -0.6
SIX4-202ENST00000554079 KCND1Q9NSA2 647 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 NOB1Q9ULX3 412 aaKnown RBP11.3□□□□□ -0.6
SIX4-202ENST00000554079 CNPY2Q9Y2B0 182 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 SH3BP1Q9Y3L3 701 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 WDR33Q9C0J8 1336 aaKnown RBP11.3□□□□□ -0.6
SIX4-202ENST00000554079 CCDC196A0A1B0GTZ2 297 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 PPP1R12AO14974 1030 aaPredicted RBP11.3□□□□□ -0.6
SIX4-202ENST00000554079 NPHP1O15259 732 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 RPS6KA5O75582 802 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 IVLP07476 585 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 TMCO3Q6UWJ1 677 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 PLEKHM2Q8IWE5 1019 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 ANKRD20A12PQ8NF67 263 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 SRCIN1Q9C0H9 1055 aa11.3□□□□□ -0.6
SIX4-202ENST00000554079 KIAA0556O60303 1618 aa11.29□□□□□ -0.6
SIX4-202ENST00000554079 RTL1A6NKG5 1358 aa11.29□□□□□ -0.6
SIX4-202ENST00000554079 ABCC11Q96J66 1382 aa11.29□□□□□ -0.6
SIX4-202ENST00000554079 TULP1O00294 542 aaPredicted RBP11.29□□□□□ -0.6
SIX4-202ENST00000554079 SASH3O75995 380 aa11.29□□□□□ -0.6
SIX4-202ENST00000554079 MCM2P49736 904 aa11.29□□□□□ -0.6
SIX4-202ENST00000554079 C11orf91Q3C1V1 193 aa11.29□□□□□ -0.6
SIX4-202ENST00000554079 PLA2R1Q13018 1463 aa11.29□□□□□ -0.6
SIX4-202ENST00000554079 TBC1D8O95759 1140 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 CCDC192P0DO97 292 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 CDC25BP30305 580 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 TRDNQ13061 729 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 MAP9Q49MG5 647 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 ARHGAP29Q52LW3 1261 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 LRCH2Q5VUJ6 765 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 FILIP1Q7Z7B0 1213 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 RPAINQ86UA6 219 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 ORC3Q9UBD5 711 aaPredicted RBP11.28□□□□□ -0.6
SIX4-202ENST00000554079 MRVI1Q9Y6F6 885 aa11.28□□□□□ -0.6
SIX4-202ENST00000554079 KIF2AO00139 706 aaPredicted RBP11.28□□□□□ -0.6
SIX4-202ENST00000554079 SEC31AO94979 1220 aaKnown RBP11.28□□□□□ -0.6
SIX4-202ENST00000554079 LMAN1P49257 510 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 EXOSC9Q06265 439 aaKnown RBP11.27□□□□□ -0.61
SIX4-202ENST00000554079 SMC1AQ14683 1233 aaKnown RBP11.27□□□□□ -0.61
SIX4-202ENST00000554079 FOXR1Q6PIV2 292 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 LUZP1Q86V48 1076 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 LRRC8AQ8IWT6 810 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 DRC7Q8IY82 874 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 RBM28Q9NW13 759 aaKnown RBP11.27□□□□□ -0.61
SIX4-202ENST00000554079 ARGLU1Q9NWB6 273 aaPredicted RBP11.27□□□□□ -0.61
SIX4-202ENST00000554079 ADAM21Q9UKJ8 722 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 TTC37Q6PGP7 1564 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 RGS12O14924 1447 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 SPHKAPQ2M3C7 1700 aa11.27□□□□□ -0.61
SIX4-202ENST00000554079 SIRT2Q8IXJ6 389 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 CCAR2Q8N163 923 aaKnown RBP11.26□□□□□ -0.61
SIX4-202ENST00000554079 TDRD7Q8NHU6 1098 aaKnown RBP11.26□□□□□ -0.61
SIX4-202ENST00000554079 TSR2Q969E8 191 aaKnown RBP11.26□□□□□ -0.61
SIX4-202ENST00000554079 ABCA6Q8N139 1617 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 KIF3CO14782 793 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 NEMFO60524 1076 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 CASTP20810 708 aaKnown RBP11.26□□□□□ -0.61
SIX4-202ENST00000554079 NEK4P51957 841 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 CCZ1BP86790 482 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 CCZ1P86791 482 aaPredicted RBP11.26□□□□□ -0.61
SIX4-202ENST00000554079 JMYQ8N9B5 988 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 CBX8Q9HC52 389 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 CLIP2Q9UDT6 1046 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.26□□□□□ -0.61
SIX4-202ENST00000554079 PIK3R4Q99570 1358 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 ZNF518AQ6AHZ1 1483 aa11.26□□□□□ -0.61
SIX4-202ENST00000554079 UNC13BO14795 1591 aa11.25□□□□□ -0.61
SIX4-202ENST00000554079 TYRO3Q06418 890 aa11.25□□□□□ -0.61
SIX4-202ENST00000554079 PPP2R5AQ15172 486 aa11.25□□□□□ -0.61
SIX4-202ENST00000554079 NBPF10Q6P3W6 841 aaKnown RBP11.25□□□□□ -0.61
SIX4-202ENST00000554079 GPATCH8Q9UKJ3 1502 aaKnown RBP11.25□□□□□ -0.61
SIX4-202ENST00000554079 LEKR1Q6ZMV7 388 aa11.25□□□□□ -0.61
SIX4-202ENST00000554079 EFCAB13Q8IY85 973 aa11.25□□□□□ -0.61
SIX4-202ENST00000554079 TRIM5Q9C035 493 aa11.25□□□□□ -0.61
SIX4-202ENST00000554079 PDRG1Q9NUG6 133 aa11.25□□□□□ -0.61
SIX4-202ENST00000554079 ZBTB7BO15156 539 aaPredicted RBP11.24□□□□□ -0.61
SIX4-202ENST00000554079 ARID5BQ14865 1188 aa11.24□□□□□ -0.61
SIX4-202ENST00000554079 CC2D1AQ6P1N0 951 aaPredicted RBP11.24□□□□□ -0.61
SIX4-202ENST00000554079 USP32Q8NFA0 1604 aa11.24□□□□□ -0.61
SIX4-202ENST00000554079 TBC1D22AQ8WUA7 517 aa11.24□□□□□ -0.61
SIX4-202ENST00000554079 ZNF428Q96B54 188 aa11.24□□□□□ -0.61
SIX4-202ENST00000554079 PLCD4Q9BRC7 762 aa11.24□□□□□ -0.61
SIX4-202ENST00000554079 C9orf84Q5VXU9 1444 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 KLHL33A6NCF5 533 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 H3BQF6 201 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 C21orf2O43822 256 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 INHBEP58166 350 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 RGL3Q3MIN7 710 aa11.23□□□□□ -0.61
SIX4-202ENST00000554079 TADA2BQ86TJ2 420 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms