RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 SCN11AQ9UI33 1791 aa11.94□□□□□ -0.5
TDP1-208ENST00000553989 ZNF316A6NFI3 1004 aaPredicted RBP11.93□□□□□ -0.5
TDP1-208ENST00000553989 RNMTO43148 476 aaKnown RBP11.93□□□□□ -0.5
TDP1-208ENST00000553989 TOMM70O94826 608 aa11.93□□□□□ -0.5
TDP1-208ENST00000553989 CHRNA5P30532 468 aa11.93□□□□□ -0.5
TDP1-208ENST00000553989 APLP1P51693 650 aa11.93□□□□□ -0.5
TDP1-208ENST00000553989 CC2D1BQ5T0F9 858 aaKnown RBP11.93□□□□□ -0.5
TDP1-208ENST00000553989 IFFO2Q5TF58 517 aa11.93□□□□□ -0.5
TDP1-208ENST00000553989 DIEXFQ68CQ4 756 aaKnown RBP11.93□□□□□ -0.5
TDP1-208ENST00000553989 INTS5Q6P9B9 1019 aaKnown RBP11.93□□□□□ -0.5
TDP1-208ENST00000553989 LGR6Q9HBX8 967 aa11.93□□□□□ -0.5
TDP1-208ENST00000553989 NMRK2Q9NPI5 230 aa11.93□□□□□ -0.5
TDP1-208ENST00000553989 RNF181Q9P0P0 153 aa11.93□□□□□ -0.5
TDP1-208ENST00000553989 KIF7Q2M1P5 1343 aa11.92□□□□□ -0.5
TDP1-208ENST00000553989 POLRMTO00411 1230 aaKnown RBP11.92□□□□□ -0.5
TDP1-208ENST00000553989 DIAPH1O60610 1272 aaKnown RBP11.92□□□□□ -0.5
TDP1-208ENST00000553989 KCNA3P22001 575 aa11.92□□□□□ -0.5
TDP1-208ENST00000553989 MKRN4PQ13434 485 aaPredicted RBP11.92□□□□□ -0.5
TDP1-208ENST00000553989 TTC5Q8N0Z6 440 aa11.92□□□□□ -0.5
TDP1-208ENST00000553989 COL15A1P39059 1388 aa11.92□□□□□ -0.5
TDP1-208ENST00000553989 BRCA1P38398 1863 aaKnown RBP11.91□□□□□ -0.5
TDP1-208ENST00000553989 SOS1Q07889 1333 aaPredicted RBP11.91□□□□□ -0.5
TDP1-208ENST00000553989 MTHFSDQ2M296 383 aaKnown RBP11.91□□□□□ -0.5
TDP1-208ENST00000553989 ZBTB1Q9Y2K1 713 aa11.91□□□□□ -0.5
TDP1-208ENST00000553989 CEP350Q5VT06 3117 aa11.91□□□□□ -0.5
TDP1-208ENST00000553989 ARFGEF1Q9Y6D6 1849 aa11.9□□□□□ -0.5
TDP1-208ENST00000553989 KDM2BQ8NHM5 1336 aa11.9□□□□□ -0.5
TDP1-208ENST00000553989 MRC1P22897 1456 aa11.9□□□□□ -0.5
TDP1-208ENST00000553989 U2SURPO15042 1029 aaKnown RBP11.9□□□□□ -0.5
TDP1-208ENST00000553989 CYP19A1P11511 503 aaPredicted RBP11.9□□□□□ -0.5
TDP1-208ENST00000553989 CANXP27824 592 aaKnown RBP11.9□□□□□ -0.5
TDP1-208ENST00000553989 NARFQ9UHQ1 456 aa11.9□□□□□ -0.5
TDP1-208ENST00000553989 ZNF330Q9Y3S2 320 aaPredicted RBP11.9□□□□□ -0.5
TDP1-208ENST00000553989 KCPQ6ZWJ8 1503 aa11.9□□□□□ -0.5
TDP1-208ENST00000553989 CENPBP07199 599 aaPredicted RBP11.89□□□□□ -0.51
TDP1-208ENST00000553989 TM4SF1P30408 202 aa11.89□□□□□ -0.51
TDP1-208ENST00000553989 NFIXQ14938 502 aa11.89□□□□□ -0.51
TDP1-208ENST00000553989 BICDL1Q6ZP65 573 aa11.89□□□□□ -0.51
TDP1-208ENST00000553989 RASSF7Q02833 373 aa11.88□□□□□ -0.51
TDP1-208ENST00000553989 TEFQ10587 303 aa11.88□□□□□ -0.51
TDP1-208ENST00000553989 NPM2Q86SE8 214 aaKnown RBP11.88□□□□□ -0.51
TDP1-208ENST00000553989 RBM46Q8TBY0 533 aaKnown RBP11.88□□□□□ -0.51
TDP1-208ENST00000553989 NPHP1O15259 732 aa11.87□□□□□ -0.51
TDP1-208ENST00000553989 STARD3NLO95772 234 aa11.87□□□□□ -0.51
TDP1-208ENST00000553989 SERPINB2P05120 415 aa11.87□□□□□ -0.51
TDP1-208ENST00000553989 VSIG10Q8N0Z9 540 aa11.87□□□□□ -0.51
TDP1-208ENST00000553989 ADAMTS7Q9UKP4 1686 aa11.87□□□□□ -0.51
TDP1-208ENST00000553989 VIRMAQ69YN4 1812 aaKnown RBP11.86□□□□□ -0.51
TDP1-208ENST00000553989 A0A087WZG4 1122 aa11.86□□□□□ -0.51
TDP1-208ENST00000553989 C2CD5Q86YS7 1000 aa11.86□□□□□ -0.51
TDP1-208ENST00000553989 GAS2L2Q8NHY3 880 aa11.86□□□□□ -0.51
TDP1-208ENST00000553989 RRAGCQ9HB90 399 aa11.86□□□□□ -0.51
TDP1-208ENST00000553989 GNAT3A8MTJ3 354 aa11.85□□□□□ -0.51
TDP1-208ENST00000553989 H0YIN7 160 aa11.85□□□□□ -0.51
TDP1-208ENST00000553989 TTLL6Q8N841 843 aa11.85□□□□□ -0.51
TDP1-208ENST00000553989 AFDNP55196 1824 aaKnown RBP11.84□□□□□ -0.51
TDP1-208ENST00000553989 PER1O15534 1290 aaPredicted RBP11.84□□□□□ -0.51
TDP1-208ENST00000553989 LMNB1P20700 586 aa11.84□□□□□ -0.51
TDP1-208ENST00000553989 HTRA3P83110 453 aa11.84□□□□□ -0.51
TDP1-208ENST00000553989 FSTL1Q12841 308 aa11.84□□□□□ -0.51
TDP1-208ENST00000553989 ZNF622Q969S3 477 aaKnown RBP eCLIP11.84□□□□□ -0.51
TDP1-208ENST00000553989 ZNF496Q96IT1 587 aaPredicted RBP11.84□□□□□ -0.51
TDP1-208ENST00000553989 BCL2L12Q9HB09 334 aa11.84□□□□□ -0.51
TDP1-208ENST00000553989 TNRC6CQ9HCJ0 1690 aaKnown RBP11.84□□□□□ -0.51
TDP1-208ENST00000553989 WDR90Q96KV7 1748 aa11.83□□□□□ -0.52
TDP1-208ENST00000553989 CARMIL3Q8ND23 1372 aa11.83□□□□□ -0.52
TDP1-208ENST00000553989 HEG1Q9ULI3 1381 aa11.83□□□□□ -0.52
TDP1-208ENST00000553989 UBR2Q8IWV8 1755 aa11.83□□□□□ -0.52
TDP1-208ENST00000553989 ZNF790Q6PG37 636 aa11.83□□□□□ -0.52
TDP1-208ENST00000553989 SMC1BQ8NDV3 1235 aa11.83□□□□□ -0.52
TDP1-208ENST00000553989 CFAP53Q96M91 514 aa11.83□□□□□ -0.52
TDP1-208ENST00000553989 TEX13AQ9BXU3 409 aaPredicted RBP11.83□□□□□ -0.52
TDP1-208ENST00000553989 SPINK5Q9NQ38 1064 aaPredicted RBP11.83□□□□□ -0.52
TDP1-208ENST00000553989 TBC1D2BQ9UPU7 963 aa11.83□□□□□ -0.52
TDP1-208ENST00000553989 ZC3H4Q9UPT8 1303 aaKnown RBP11.83□□□□□ -0.52
TDP1-208ENST00000553989 EIF5P55010 431 aaKnown RBP11.82□□□□□ -0.52
TDP1-208ENST00000553989 POLA2Q14181 598 aa11.82□□□□□ -0.52
TDP1-208ENST00000553989 TBC1D9BQ66K14 1250 aa11.82□□□□□ -0.52
TDP1-208ENST00000553989 FMNL2Q96PY5 1086 aa11.82□□□□□ -0.52
TDP1-208ENST00000553989 NRXN2Q9P2S2 1712 aa11.82□□□□□ -0.52
TDP1-208ENST00000553989 COL3A1P02461 1466 aaPredicted RBP11.82□□□□□ -0.52
TDP1-208ENST00000553989 BTBD11A6QL63 1104 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 PRKAR2BP31323 418 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 PDE6BP35913 854 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 CCDC24Q8N4L8 307 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 DNAJC5GQ8N7S2 189 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 IL17REQ8NFR9 667 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 KLRG1Q96E93 195 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 DLEC1Q9Y238 1755 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 SCN7AQ01118 1682 aa11.81□□□□□ -0.52
TDP1-208ENST00000553989 SBF1O95248 1867 aa11.8□□□□□ -0.52
TDP1-208ENST00000553989 NPC1L1Q9UHC9 1359 aa11.8□□□□□ -0.52
TDP1-208ENST00000553989 GLTPD2A6NH11 291 aa11.8□□□□□ -0.52
TDP1-208ENST00000553989 VEGFAP15692 232 aaPredicted RBP11.8□□□□□ -0.52
TDP1-208ENST00000553989 IL6STP40189 918 aaPredicted RBP11.8□□□□□ -0.52
TDP1-208ENST00000553989 ST5P78524 1137 aa11.8□□□□□ -0.52
TDP1-208ENST00000553989 CNBD1Q8NA66 436 aa11.8□□□□□ -0.52
TDP1-208ENST00000553989 SETDB2Q96T68 719 aa11.8□□□□□ -0.52
TDP1-208ENST00000553989 PDZRN3Q9UPQ7 1066 aa11.8□□□□□ -0.52
TDP1-208ENST00000553989 NUDCQ9Y266 331 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms