RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 AFDNP55196 1824 aaKnown RBP17.88■□□□□ 0.45
VPS29-211ENST00000553128 ZPR1O75312 459 aa17.88■□□□□ 0.45
VPS29-211ENST00000553128 MKRN1Q9UHC7 482 aaKnown RBP17.88■□□□□ 0.45
VPS29-211ENST00000553128 SOS1Q07889 1333 aaPredicted RBP17.88■□□□□ 0.45
VPS29-211ENST00000553128 CARMIL3Q8ND23 1372 aa17.88■□□□□ 0.45
VPS29-211ENST00000553128 BCL2L12Q9HB09 334 aa17.87■□□□□ 0.45
VPS29-211ENST00000553128 NRXN2Q9P2S2 1712 aa17.86■□□□□ 0.45
VPS29-211ENST00000553128 POTEIP0CG38 1075 aa17.86■□□□□ 0.45
VPS29-211ENST00000553128 POTEJP0CG39 1038 aa17.86■□□□□ 0.45
VPS29-211ENST00000553128 AMOTQ4VCS5 1084 aa17.86■□□□□ 0.45
VPS29-211ENST00000553128 TTLL6Q8N841 843 aa17.86■□□□□ 0.45
VPS29-211ENST00000553128 DLEC1Q9Y238 1755 aa17.86■□□□□ 0.45
VPS29-211ENST00000553128 FOXN1O15353 648 aa17.85■□□□□ 0.45
VPS29-211ENST00000553128 SERPINB2P05120 415 aa17.85■□□□□ 0.45
VPS29-211ENST00000553128 CCDC88AQ3V6T2 1871 aa17.85■□□□□ 0.45
VPS29-211ENST00000553128 C2CD5Q86YS7 1000 aa17.85■□□□□ 0.45
VPS29-211ENST00000553128 C1orf141Q5JVX7 400 aa17.84■□□□□ 0.45
VPS29-211ENST00000553128 NARFQ9UHQ1 456 aa17.84■□□□□ 0.45
VPS29-211ENST00000553128 COL15A1P39059 1388 aa17.83■□□□□ 0.45
VPS29-211ENST00000553128 CYP19A1P11511 503 aaPredicted RBP17.83■□□□□ 0.44
VPS29-211ENST00000553128 CREBZFQ9NS37 354 aa17.83■□□□□ 0.44
VPS29-211ENST00000553128 ZNF219Q9P2Y4 722 aaPredicted RBP17.83■□□□□ 0.44
VPS29-211ENST00000553128 ZBTB1Q9Y2K1 713 aa17.83■□□□□ 0.44
VPS29-211ENST00000553128 SLC39A6Q13433 755 aa17.82■□□□□ 0.44
VPS29-211ENST00000553128 CHADLQ6NUI6 762 aa17.81■□□□□ 0.44
VPS29-211ENST00000553128 LGR6Q9HBX8 967 aa17.81■□□□□ 0.44
VPS29-211ENST00000553128 H0YIN7 160 aa17.8■□□□□ 0.44
VPS29-211ENST00000553128 C21orf2O43822 256 aa17.8■□□□□ 0.44
VPS29-211ENST00000553128 SULT6B1Q6IMI4 303 aa17.8■□□□□ 0.44
VPS29-211ENST00000553128 DPY19L2Q6NUT2 758 aa17.8■□□□□ 0.44
VPS29-211ENST00000553128 BICDL1Q6ZP65 573 aa17.8■□□□□ 0.44
VPS29-211ENST00000553128 CCDC24Q8N4L8 307 aa17.8■□□□□ 0.44
VPS29-211ENST00000553128 SCN11AQ9UI33 1791 aa17.79■□□□□ 0.44
VPS29-211ENST00000553128 ERFEQ4G0M1 354 aa17.79■□□□□ 0.44
VPS29-211ENST00000553128 POLR3GLQ9BT43 218 aa17.79■□□□□ 0.44
VPS29-211ENST00000553128 SLC52A2Q9HAB3 445 aa17.79■□□□□ 0.44
VPS29-211ENST00000553128 CNTNAP1P78357 1384 aa17.79■□□□□ 0.44
VPS29-211ENST00000553128 DDNO94850 711 aaPredicted RBP17.78■□□□□ 0.44
VPS29-211ENST00000553128 SLC34A2O95436 690 aa17.78■□□□□ 0.44
VPS29-211ENST00000553128 ZNF622Q969S3 477 aaKnown RBP eCLIP17.78■□□□□ 0.44
VPS29-211ENST00000553128 ANKRD31Q8N7Z5 1873 aa17.77■□□□□ 0.43
VPS29-211ENST00000553128 COL11A2P13942 1736 aaPredicted RBP17.76■□□□□ 0.43
VPS29-211ENST00000553128 CANXP27824 592 aaKnown RBP17.76■□□□□ 0.43
VPS29-211ENST00000553128 PRDM10Q9NQV6 1147 aa17.76■□□□□ 0.43
VPS29-211ENST00000553128 PASKQ96RG2 1323 aa17.75■□□□□ 0.43
VPS29-211ENST00000553128 VEGFBP49765 207 aa17.75■□□□□ 0.43
VPS29-211ENST00000553128 AKAP4Q5JQC9 854 aa17.75■□□□□ 0.43
VPS29-211ENST00000553128 TBC1D9BQ66K14 1250 aa17.75■□□□□ 0.43
VPS29-211ENST00000553128 FER1L6Q2WGJ9 1857 aa17.75■□□□□ 0.43
VPS29-211ENST00000553128 MRC1P22897 1456 aa17.75■□□□□ 0.43
VPS29-211ENST00000553128 DICER1Q9UPY3 1922 aaKnown RBP17.74■□□□□ 0.43
VPS29-211ENST00000553128 RNMTO43148 476 aaKnown RBP17.74■□□□□ 0.43
VPS29-211ENST00000553128 IL13P35225 146 aa17.74■□□□□ 0.43
VPS29-211ENST00000553128 CTCFP49711 727 aaPredicted RBP17.73■□□□□ 0.43
VPS29-211ENST00000553128 PRR5LQ6MZQ0 368 aa17.73■□□□□ 0.43
VPS29-211ENST00000553128 LBX1P52954 281 aa17.72■□□□□ 0.43
VPS29-211ENST00000553128 EIF5P55010 431 aaKnown RBP17.72■□□□□ 0.43
VPS29-211ENST00000553128 BRIP1Q9BX63 1249 aa17.72■□□□□ 0.43
VPS29-211ENST00000553128 TAOK3Q9H2K8 898 aa17.72■□□□□ 0.43
VPS29-211ENST00000553128 PANK3Q9H999 370 aa17.72■□□□□ 0.43
VPS29-211ENST00000553128 LTBP3Q9NS15 1303 aa17.72■□□□□ 0.43
VPS29-211ENST00000553128 ITGBL1O95965 494 aaPredicted RBP17.71■□□□□ 0.43
VPS29-211ENST00000553128 WBP1LQ9NX94 342 aa17.71■□□□□ 0.43
VPS29-211ENST00000553128 PDE6BP35913 854 aa17.7■□□□□ 0.42
VPS29-211ENST00000553128 FAM161AQ3B820 660 aa17.7■□□□□ 0.42
VPS29-211ENST00000553128 LDHDQ86WU2 507 aa17.7■□□□□ 0.42
VPS29-211ENST00000553128 AIDAQ96BJ3 306 aa17.7■□□□□ 0.42
VPS29-211ENST00000553128 TAF1DQ9H5J8 278 aaPredicted RBP17.7■□□□□ 0.42
VPS29-211ENST00000553128 SLX4Q8IY92 1834 aa17.7■□□□□ 0.42
VPS29-211ENST00000553128 TMEM88BA6NKF7 163 aa17.69■□□□□ 0.42
VPS29-211ENST00000553128 MORC1Q86VD1 984 aa17.69■□□□□ 0.42
VPS29-211ENST00000553128 VSIG10Q8N0Z9 540 aa17.69■□□□□ 0.42
VPS29-211ENST00000553128 TBC1D2BQ9UPU7 963 aa17.69■□□□□ 0.42
VPS29-211ENST00000553128 PRPF40BQ6NWY9 871 aaKnown RBP17.68■□□□□ 0.42
VPS29-211ENST00000553128 ABHD8Q96I13 439 aa17.68■□□□□ 0.42
VPS29-211ENST00000553128 L3MBTL3Q96JM7 780 aaPredicted RBP17.68■□□□□ 0.42
VPS29-211ENST00000553128 VIRMAQ69YN4 1812 aaKnown RBP17.68■□□□□ 0.42
VPS29-211ENST00000553128 UBR2Q8IWV8 1755 aa17.67■□□□□ 0.42
VPS29-211ENST00000553128 HMOX1P09601 288 aa17.67■□□□□ 0.42
VPS29-211ENST00000553128 HSPA8P11142 646 aaKnown RBP17.67■□□□□ 0.42
VPS29-211ENST00000553128 MTHFSDQ2M296 383 aaKnown RBP17.67■□□□□ 0.42
VPS29-211ENST00000553128 EAPPQ56P03 285 aaPredicted RBP17.67■□□□□ 0.42
VPS29-211ENST00000553128 SCN7AQ01118 1682 aa17.67■□□□□ 0.42
VPS29-211ENST00000553128 ZNF541Q9H0D2 1346 aa17.67■□□□□ 0.42
VPS29-211ENST00000553128 IQCA1LA6NCM1 817 aa17.66■□□□□ 0.42
VPS29-211ENST00000553128 PDZRN3Q9UPQ7 1066 aa17.66■□□□□ 0.42
VPS29-211ENST00000553128 ZNF330Q9Y3S2 320 aaPredicted RBP17.66■□□□□ 0.42
VPS29-211ENST00000553128 CACNA1SQ13698 1873 aa17.65■□□□□ 0.42
VPS29-211ENST00000553128 A0A087WZG4 1122 aa17.65■□□□□ 0.42
VPS29-211ENST00000553128 SRGNP10124 158 aa17.65■□□□□ 0.42
VPS29-211ENST00000553128 CNKSR1Q969H4 720 aa17.65■□□□□ 0.42
VPS29-211ENST00000553128 STARD3NLO95772 234 aa17.64■□□□□ 0.41
VPS29-211ENST00000553128 STYK1Q6J9G0 422 aa17.64■□□□□ 0.41
VPS29-211ENST00000553128 OLFM4Q6UX06 510 aa17.64■□□□□ 0.41
VPS29-211ENST00000553128 CNBD1Q8NA66 436 aa17.64■□□□□ 0.41
VPS29-211ENST00000553128 C7orf43Q8WVR3 580 aa17.64■□□□□ 0.41
VPS29-211ENST00000553128 ZNF496Q96IT1 587 aaPredicted RBP17.64■□□□□ 0.41
VPS29-211ENST00000553128 ADAMTSL1Q8N6G6 1762 aa17.63■□□□□ 0.41
VPS29-211ENST00000553128 SCN4AP35499 1836 aa17.63■□□□□ 0.41
VPS29-211ENST00000553128 RASSF10A6NK89 507 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms