RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 KCNA6P17658 529 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 CCDC173Q0VFZ6 552 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 TAF7Q15545 349 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-213ENST00000552720 HDGFL1Q5TGJ6 251 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 PPP1R9BQ96SB3 815 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 DTNBO60941 627 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 NBPF7P0C2Y1 421 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-213ENST00000552720 UBTFL1P0CB47 393 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-213ENST00000552720 PPP1R42Q7Z4L9 355 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 LGR6Q9HBX8 967 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 TBX22Q9Y458 520 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 SLIT1O75093 1534 aa9.14□□□□□ -0.95
LIMA1-213ENST00000552720 SYCE3A1L190 88 aa9.13□□□□□ -0.95
LIMA1-213ENST00000552720 ZBTB7CA1YPR0 619 aa9.13□□□□□ -0.95
LIMA1-213ENST00000552720 SURF6O75683 361 aaKnown RBP9.13□□□□□ -0.95
LIMA1-213ENST00000552720 LARP6Q9BRS8 491 aaKnown RBP9.13□□□□□ -0.95
LIMA1-213ENST00000552720 ARHGAP23Q9P227 1491 aa9.13□□□□□ -0.95
LIMA1-213ENST00000552720 HTATSF1O43719 755 aaKnown RBP9.13□□□□□ -0.95
LIMA1-213ENST00000552720 GDPD2Q9HCC8 539 aa9.13□□□□□ -0.95
LIMA1-213ENST00000552720 STAP2Q9UGK3 403 aa9.13□□□□□ -0.95
LIMA1-213ENST00000552720 SOS1Q07889 1333 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-213ENST00000552720 FER1L4A9Z1Z3 1794 aa9.13□□□□□ -0.95
LIMA1-213ENST00000552720 BRD1O95696 1058 aa9.12□□□□□ -0.95
LIMA1-213ENST00000552720 CUL4AQ13619 759 aa9.12□□□□□ -0.95
LIMA1-213ENST00000552720 SSH3Q8TE77 659 aa9.12□□□□□ -0.95
LIMA1-213ENST00000552720 KDM3BQ7LBC6 1761 aa9.12□□□□□ -0.95
LIMA1-213ENST00000552720 NBPF6Q5VWK0 638 aa9.12□□□□□ -0.95
LIMA1-213ENST00000552720 NBPF4Q96M43 638 aa9.12□□□□□ -0.95
LIMA1-213ENST00000552720 CHPF2Q9P2E5 772 aa9.12□□□□□ -0.95
LIMA1-213ENST00000552720 SRGAP3O43295 1099 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 MCCP23508 829 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 RNF214Q8ND24 703 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 PI4K2BQ8TCG2 481 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 PXDNLA1KZ92 1463 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 USP54Q70EL1 1684 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 PI4KAP2A4QPH2 592 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 GADD45BO75293 160 aaPredicted RBP9.11□□□□□ -0.95
LIMA1-213ENST00000552720 PI4KAP1Q8N8J0 262 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 RHPN1Q8TCX5 695 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 ANP32BQ92688 251 aaKnown RBP9.11□□□□□ -0.95
LIMA1-213ENST00000552720 LRRC59Q96AG4 307 aaKnown RBP9.11□□□□□ -0.95
LIMA1-213ENST00000552720 SRCIN1Q9C0H9 1055 aa9.11□□□□□ -0.95
LIMA1-213ENST00000552720 CPA1P15085 419 aa9.1□□□□□ -0.95
LIMA1-213ENST00000552720 EIF4A1P60842 406 aaKnown RBP9.1□□□□□ -0.95
LIMA1-213ENST00000552720 RASEFQ8IZ41 740 aa9.1□□□□□ -0.95
LIMA1-213ENST00000552720 HSPA4P34932 840 aa9.1□□□□□ -0.95
LIMA1-213ENST00000552720 ANAPC15P60006 121 aa9.1□□□□□ -0.95
LIMA1-213ENST00000552720 POLA2Q14181 598 aa9.1□□□□□ -0.95
LIMA1-213ENST00000552720 LRSAM1Q6UWE0 723 aa9.1□□□□□ -0.95
LIMA1-213ENST00000552720 ZSCAN30Q86W11 494 aa9.1□□□□□ -0.95
LIMA1-213ENST00000552720 SPG7Q9UQ90 795 aa9.1□□□□□ -0.95
LIMA1-213ENST00000552720 MCM2P49736 904 aa9.09□□□□□ -0.95
LIMA1-213ENST00000552720 BEND3Q5T5X7 828 aa9.09□□□□□ -0.95
LIMA1-213ENST00000552720 CWC27Q6UX04 472 aaKnown RBP9.09□□□□□ -0.95
LIMA1-213ENST00000552720 MPRIPQ6WCQ1 1025 aa9.09□□□□□ -0.95
LIMA1-213ENST00000552720 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.09□□□□□ -0.95
LIMA1-213ENST00000552720 CEMIPQ8WUJ3 1361 aa9.09□□□□□ -0.95
LIMA1-213ENST00000552720 PRAMEF22A3QJZ6 481 aa9.09□□□□□ -0.95
LIMA1-213ENST00000552720 SNX14Q9Y5W7 946 aa9.09□□□□□ -0.95
LIMA1-213ENST00000552720 MED1Q15648 1581 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-213ENST00000552720 ADCY9O60503 1353 aa9.09□□□□□ -0.95
LIMA1-213ENST00000552720 ANKARQ7Z5J8 1434 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 SGSM2O43147 1006 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 PROSER3Q2NL68 480 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 THEMISQ8N1K5 641 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-213ENST00000552720 DNAAF4Q8WXU2 420 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 INTS4Q96HW7 963 aaKnown RBP9.08□□□□□ -0.96
LIMA1-213ENST00000552720 PDLIM2Q96JY6 352 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 CRYBG1Q9Y4K1 1723 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 RPAP1Q9BWH6 1393 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-213ENST00000552720 LMO7Q8WWI1 1683 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 MSNP26038 577 aaKnown RBP9.08□□□□□ -0.96
LIMA1-213ENST00000552720 DDX54Q8TDD1 881 aaKnown RBP9.08□□□□□ -0.96
LIMA1-213ENST00000552720 KIF1BPQ96EK5 621 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 LSG1Q9H089 658 aaKnown RBP9.08□□□□□ -0.96
LIMA1-213ENST00000552720 PHF8Q9UPP1 1060 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 PA2G4Q9UQ80 394 aaKnown RBP9.08□□□□□ -0.96
LIMA1-213ENST00000552720 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-213ENST00000552720 AOX1Q06278 1338 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 RAD50Q92878 1312 aa9.08□□□□□ -0.96
LIMA1-213ENST00000552720 NFAT5O94916 1531 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 RAB11FIP3O75154 756 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 LARGE1O95461 756 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 AK2P54819 239 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 XPCQ01831 940 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-213ENST00000552720 KIAA1211Q6ZU35 1233 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 USP48Q86UV5 1035 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 IP6K1Q92551 441 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 PXDNQ92626 1479 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 RGPD5Q99666 1765 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 CHD2O14647 1828 aaKnown RBP9.07□□□□□ -0.96
LIMA1-213ENST00000552720 BTBD11A6QL63 1104 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 OS9Q13438 667 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-213ENST00000552720 CWF19L2Q2TBE0 894 aaKnown RBP9.07□□□□□ -0.96
LIMA1-213ENST00000552720 ZNF530Q6P9A1 599 aaPredicted RBP9.07□□□□□ -0.96
LIMA1-213ENST00000552720 BABAM1Q9NWV8 329 aa9.07□□□□□ -0.96
LIMA1-213ENST00000552720 MBD3O95983 291 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 PTH1RQ03431 593 aa9.06□□□□□ -0.96
LIMA1-213ENST00000552720 COL9A3Q14050 684 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-213ENST00000552720 RUFY3Q7L099 469 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms