RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, human

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPAS3-208	ENST00000550662	ZIC2	O95409	532 aa	Predicted RBP	10.89	□□□□□ -0.67
NPAS3-208	ENST00000550662	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.89	□□□□□ -0.67
NPAS3-208	ENST00000550662	ITPKC	Q96DU7	683 aa		10.89	□□□□□ -0.67
NPAS3-208	ENST00000550662	KLF16	Q9BXK1	252 aa	Predicted RBP	10.89	□□□□□ -0.67
NPAS3-208	ENST00000550662	HRH3	Q9Y5N1	445 aa		10.89	□□□□□ -0.67
NPAS3-208	ENST00000550662	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	10.89	□□□□□ -0.67
NPAS3-208	ENST00000550662	WDR4	P57081	412 aa	Known RBP	10.88	□□□□□ -0.67
NPAS3-208	ENST00000550662	C2orf49	Q9BVC5	232 aa	Predicted RBP	10.88	□□□□□ -0.67
NPAS3-208	ENST00000550662	ANO2	Q9NQ90	1003 aa		10.88	□□□□□ -0.67
NPAS3-208	ENST00000550662	CBLB	Q13191	982 aa		10.87	□□□□□ -0.67
NPAS3-208	ENST00000550662	LCE2C	Q5TA81	110 aa		10.87	□□□□□ -0.67
NPAS3-208	ENST00000550662	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	10.87	□□□□□ -0.67
NPAS3-208	ENST00000550662	CAPN12	Q6ZSI9	719 aa		10.87	□□□□□ -0.67
NPAS3-208	ENST00000550662	KDF1	Q8NAX2	398 aa	Predicted RBP	10.87	□□□□□ -0.67
NPAS3-208	ENST00000550662	NLRP3	Q96P20	1036 aa		10.87	□□□□□ -0.67
NPAS3-208	ENST00000550662	FAM13A	O94988	1023 aa		10.86	□□□□□ -0.67
NPAS3-208	ENST00000550662	NAA30	Q147X3	362 aa	Predicted RBP	10.86	□□□□□ -0.67
NPAS3-208	ENST00000550662	C16orf46	Q6P387	395 aa		10.86	□□□□□ -0.67
NPAS3-208	ENST00000550662	KIFC2	Q96AC6	838 aa		10.86	□□□□□ -0.67
NPAS3-208	ENST00000550662	TERT	O14746	1132 aa	Known RBP	10.85	□□□□□ -0.67
NPAS3-208	ENST00000550662	TIMP2	P16035	220 aa		10.85	□□□□□ -0.67
NPAS3-208	ENST00000550662	NPR3	P17342	541 aa		10.85	□□□□□ -0.67
NPAS3-208	ENST00000550662	CENPC	Q03188	943 aa		10.85	□□□□□ -0.67
NPAS3-208	ENST00000550662	POTEA	Q6S8J7	498 aa		10.85	□□□□□ -0.67
NPAS3-208	ENST00000550662	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.85	□□□□□ -0.67
NPAS3-208	ENST00000550662	CAPN5	O15484	640 aa	Predicted RBP	10.84	□□□□□ -0.67
NPAS3-208	ENST00000550662	RBM25	P49756	843 aa	Known RBP	10.84	□□□□□ -0.67
NPAS3-208	ENST00000550662	HIRA	P54198	1017 aa	Predicted RBP	10.84	□□□□□ -0.67
NPAS3-208	ENST00000550662	TEAD4	Q15561	434 aa		10.84	□□□□□ -0.67
NPAS3-208	ENST00000550662	TRIM46	Q7Z4K8	759 aa		10.84	□□□□□ -0.67
NPAS3-208	ENST00000550662	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.84	□□□□□ -0.67
NPAS3-208	ENST00000550662	ZFAND3	Q9H8U3	227 aa		10.84	□□□□□ -0.67
NPAS3-208	ENST00000550662	MEN1	O00255	615 aa		10.83	□□□□□ -0.68
NPAS3-208	ENST00000550662	WIPF1	O43516	503 aa		10.83	□□□□□ -0.68
NPAS3-208	ENST00000550662	GTF2E1	P29083	439 aa	Predicted RBP	10.83	□□□□□ -0.68
NPAS3-208	ENST00000550662	TBCEL	Q5QJ74	424 aa		10.83	□□□□□ -0.68
NPAS3-208	ENST00000550662	DCTN4	Q9UJW0	460 aa		10.83	□□□□□ -0.68
NPAS3-208	ENST00000550662	SERTM1	A2A2V5	107 aa		10.82	□□□□□ -0.68
NPAS3-208	ENST00000550662	BMP1	P13497	986 aa		10.82	□□□□□ -0.68
NPAS3-208	ENST00000550662	ECM1	Q16610	540 aa		10.82	□□□□□ -0.68
NPAS3-208	ENST00000550662	PPARGC1B	Q86YN6	1023 aa	Known RBP	10.82	□□□□□ -0.68
NPAS3-208	ENST00000550662	MYO19	Q96H55	970 aa		10.82	□□□□□ -0.68
NPAS3-208	ENST00000550662	AGBL1	Q96MI9	1066 aa		10.82	□□□□□ -0.68
NPAS3-208	ENST00000550662	GPC1	P35052	558 aa		10.81	□□□□□ -0.68
NPAS3-208	ENST00000550662	ARHGAP4	P98171	946 aa		10.81	□□□□□ -0.68
NPAS3-208	ENST00000550662	RELB	Q01201	579 aa		10.81	□□□□□ -0.68
NPAS3-208	ENST00000550662	MTMR3	Q13615	1198 aa		10.81	□□□□□ -0.68
NPAS3-208	ENST00000550662	MEIOB	Q8N635	442 aa		10.81	□□□□□ -0.68
NPAS3-208	ENST00000550662	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	10.81	□□□□□ -0.68
NPAS3-208	ENST00000550662	RBM47	A0AV96	593 aa	Known RBP	10.8	□□□□□ -0.68
NPAS3-208	ENST00000550662	EML1	O00423	815 aa		10.8	□□□□□ -0.68
NPAS3-208	ENST00000550662	NOS2	P35228	1153 aa		10.8	□□□□□ -0.68
NPAS3-208	ENST00000550662	ALKBH2	Q6NS38	261 aa		10.8	□□□□□ -0.68
NPAS3-208	ENST00000550662	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	10.8	□□□□□ -0.68
NPAS3-208	ENST00000550662	TSEN34	Q9BSV6	310 aa	Known RBP	10.8	□□□□□ -0.68
NPAS3-208	ENST00000550662	CABP1	Q9NZU7	370 aa		10.8	□□□□□ -0.68
NPAS3-208	ENST00000550662	USP3	Q9Y6I4	520 aa		10.8	□□□□□ -0.68
NPAS3-208	ENST00000550662	MAPK1	P28482	360 aa		10.79	□□□□□ -0.68
NPAS3-208	ENST00000550662	COX20	Q5RI15	118 aa		10.79	□□□□□ -0.68
NPAS3-208	ENST00000550662	ASB16	Q96NS5	453 aa		10.79	□□□□□ -0.68
NPAS3-208	ENST00000550662	NIFK	Q9BYG3	293 aa	Known RBP	10.79	□□□□□ -0.68
NPAS3-208	ENST00000550662	STIM2	Q9P246	746 aa		10.79	□□□□□ -0.68
NPAS3-208	ENST00000550662	ZNF232	Q9UNY5	417 aa		10.79	□□□□□ -0.68
NPAS3-208	ENST00000550662	ANKRD33B	A6NCL7	494 aa		10.78	□□□□□ -0.68
NPAS3-208	ENST00000550662		E9PSI1	815 aa		10.78	□□□□□ -0.68
NPAS3-208	ENST00000550662	TMEM214	Q6NUQ4	689 aa	Known RBP	10.78	□□□□□ -0.68
NPAS3-208	ENST00000550662	ABTB2	Q8N961	1025 aa		10.78	□□□□□ -0.68
NPAS3-208	ENST00000550662	RHBDD1	Q8TEB9	315 aa		10.78	□□□□□ -0.68
NPAS3-208	ENST00000550662	SAP130	Q9H0E3	1048 aa		10.78	□□□□□ -0.68
NPAS3-208	ENST00000550662	ZNF395	Q9H8N7	513 aa	Predicted RBP	10.78	□□□□□ -0.68
NPAS3-208	ENST00000550662	QTRT2	Q9H974	415 aa	Known RBP	10.78	□□□□□ -0.68
NPAS3-208	ENST00000550662	ZNF295-AS1	Q8N0V1	137 aa		10.77	□□□□□ -0.69
NPAS3-208	ENST00000550662	L3MBTL2	Q969R5	705 aa		10.77	□□□□□ -0.69
NPAS3-208	ENST00000550662	NDUFB5	O43674	189 aa		10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	UPP2	O95045	317 aa		10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	MPST	P25325	297 aa		10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	BRD2	P25440	801 aa	Known RBP	10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	RNF144A	P50876	292 aa	Predicted RBP	10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	RTN1	Q16799	776 aa		10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	NOM1	Q5C9Z4	860 aa	Known RBP	10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	GNAS	Q5JWF2	1037 aa		10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	ZDHHC1	Q8WTX9	485 aa		10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	ZNF428	Q96B54	188 aa		10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	GRIP2	Q9C0E4	1043 aa		10.76	□□□□□ -0.69
NPAS3-208	ENST00000550662	TNFRSF10B	O14763	440 aa		10.75	□□□□□ -0.69
NPAS3-208	ENST00000550662	COL19A1	Q14993	1142 aa		10.75	□□□□□ -0.69
NPAS3-208	ENST00000550662	SLC27A3	Q5K4L6	730 aa		10.75	□□□□□ -0.69
NPAS3-208	ENST00000550662	C1orf53	Q5VUE5	145 aa		10.75	□□□□□ -0.69
NPAS3-208	ENST00000550662	NPAS4	Q8IUM7	802 aa		10.75	□□□□□ -0.69
NPAS3-208	ENST00000550662	ALDH16A1	Q8IZ83	802 aa		10.75	□□□□□ -0.69
NPAS3-208	ENST00000550662	CITED4	Q96RK1	184 aa		10.75	□□□□□ -0.69
NPAS3-208	ENST00000550662	RBCK1	Q9BYM8	510 aa		10.75	□□□□□ -0.69
NPAS3-208	ENST00000550662	SPINT1	O43278	529 aa		10.74	□□□□□ -0.69
NPAS3-208	ENST00000550662	RGL4	Q8IZJ4	473 aa		10.74	□□□□□ -0.69
NPAS3-208	ENST00000550662	ZFP42	Q96MM3	310 aa		10.74	□□□□□ -0.69
NPAS3-208	ENST00000550662	BCL2L13	Q9BXK5	485 aa		10.74	□□□□□ -0.69
NPAS3-208	ENST00000550662	NXF1	Q9UBU9	619 aa	Known RBP	10.74	□□□□□ -0.69
NPAS3-208	ENST00000550662	BRPF3	Q9ULD4	1205 aa		10.74	□□□□□ -0.69
NPAS3-208	ENST00000550662	EIF1AX	P47813	144 aa	Known RBP	10.73	□□□□□ -0.69
NPAS3-208	ENST00000550662	C11orf91	Q3C1V1	193 aa		10.73	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms