RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 CADPSQ9ULU8 1353 aa6.96□□□□□ -1.29
LIMA1-206ENST00000550611 NEURL1BA8MQ27 555 aa6.96□□□□□ -1.3
LIMA1-206ENST00000550611 GATA4P43694 442 aa6.96□□□□□ -1.3
LIMA1-206ENST00000550611 NR1H3Q13133 447 aa6.96□□□□□ -1.3
LIMA1-206ENST00000550611 TMEM214Q6NUQ4 689 aaKnown RBP6.96□□□□□ -1.3
LIMA1-206ENST00000550611 FIGNL1Q6PIW4 674 aa6.96□□□□□ -1.3
LIMA1-206ENST00000550611 GJD4Q96KN9 370 aaPredicted RBP6.96□□□□□ -1.3
LIMA1-206ENST00000550611 CHSY3Q70JA7 882 aa6.95□□□□□ -1.3
LIMA1-206ENST00000550611 KRTAP4-12Q9BQ66 201 aa6.95□□□□□ -1.3
LIMA1-206ENST00000550611 AVENQ9NQS1 362 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-206ENST00000550611 ZNF330Q9Y3S2 320 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-206ENST00000550611 PCDHGC4Q9Y5F7 938 aa6.95□□□□□ -1.3
LIMA1-206ENST00000550611 SLC24A1O60721 1099 aa6.94□□□□□ -1.3
LIMA1-206ENST00000550611 MYCP01106 439 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-206ENST00000550611 ADH6P28332 368 aa6.94□□□□□ -1.3
LIMA1-206ENST00000550611 ESCO1Q5FWF5 840 aa6.94□□□□□ -1.3
LIMA1-206ENST00000550611 FAM182BQ5T319 152 aa6.94□□□□□ -1.3
LIMA1-206ENST00000550611 LCE3BQ5TA77 95 aa6.94□□□□□ -1.3
LIMA1-206ENST00000550611 RHBDD1Q8TEB9 315 aa6.94□□□□□ -1.3
LIMA1-206ENST00000550611 MROH2BQ7Z745 1585 aa6.94□□□□□ -1.3
LIMA1-206ENST00000550611 SPATA31C1P0DKV0 1188 aa6.93□□□□□ -1.3
LIMA1-206ENST00000550611 RSPO4Q2I0M5 234 aaPredicted RBP6.93□□□□□ -1.3
LIMA1-206ENST00000550611 PPARGC1BQ86YN6 1023 aaKnown RBP6.93□□□□□ -1.3
LIMA1-206ENST00000550611 DNAAF2Q9NVR5 837 aaKnown RBP6.93□□□□□ -1.3
LIMA1-206ENST00000550611 FOXD4L6Q3SYB3 417 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-206ENST00000550611 NKAPLQ5M9Q1 402 aa6.92□□□□□ -1.3
LIMA1-206ENST00000550611 FOXD4L3Q6VB84 417 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-206ENST00000550611 NLRP8Q86W28 1048 aa6.92□□□□□ -1.3
LIMA1-206ENST00000550611 C1orf216Q8TAB5 229 aa6.92□□□□□ -1.3
LIMA1-206ENST00000550611 TRIM11Q96F44 468 aa6.92□□□□□ -1.3
LIMA1-206ENST00000550611 ZCCHC2Q9C0B9 1178 aaKnown RBP6.92□□□□□ -1.3
LIMA1-206ENST00000550611 GPBP1L1Q9HC44 474 aaPredicted RBP6.92□□□□□ -1.3
LIMA1-206ENST00000550611 KLF15Q9UIH9 416 aa6.92□□□□□ -1.3
LIMA1-206ENST00000550611 ZNF608Q9ULD9 1512 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-206ENST00000550611 FCHSD1Q86WN1 690 aa6.91□□□□□ -1.3
LIMA1-206ENST00000550611 PLVAPQ9BX97 442 aa6.91□□□□□ -1.3
LIMA1-206ENST00000550611 GOPCQ9HD26 462 aa6.91□□□□□ -1.3
LIMA1-206ENST00000550611 SCO2A0A1W2PP80 73 aa6.9□□□□□ -1.3
LIMA1-206ENST00000550611 ARTNQ5T4W7 220 aa6.9□□□□□ -1.3
LIMA1-206ENST00000550611 TBC1D9Q6ZT07 1266 aa6.9□□□□□ -1.3
LIMA1-206ENST00000550611 ZFP64Q9NPA5 681 aa6.89□□□□□ -1.31
LIMA1-206ENST00000550611 CEP164Q9UPV0 1460 aa6.88□□□□□ -1.31
LIMA1-206ENST00000550611 SPDYE3A6NKU9 549 aa6.88□□□□□ -1.31
LIMA1-206ENST00000550611 SOCS7O14512 581 aa6.88□□□□□ -1.31
LIMA1-206ENST00000550611 ATXN7O15265 892 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-206ENST00000550611 ATP4AP20648 1035 aa6.88□□□□□ -1.31
LIMA1-206ENST00000550611 TNP2Q05952 138 aa6.88□□□□□ -1.31
LIMA1-206ENST00000550611 CCDC85AQ96PX6 553 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-206ENST00000550611 CDCA7Q9BWT1 371 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-206ENST00000550611 HCN2Q9UL51 889 aa6.88□□□□□ -1.31
LIMA1-206ENST00000550611 DYRK3O43781 588 aa6.87□□□□□ -1.31
LIMA1-206ENST00000550611 GPR37L1O60883 481 aa6.87□□□□□ -1.31
LIMA1-206ENST00000550611 MAPTP10636 758 aaKnown RBP6.87□□□□□ -1.31
LIMA1-206ENST00000550611 TLR1Q15399 786 aa6.87□□□□□ -1.31
LIMA1-206ENST00000550611 ZNF468Q5VIY5 522 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-206ENST00000550611 TPSG1Q9NRR2 321 aa6.87□□□□□ -1.31
LIMA1-206ENST00000550611 CEP126Q9P2H0 1117 aa6.87□□□□□ -1.31
LIMA1-206ENST00000550611 URB2Q14146 1524 aaKnown RBP6.86□□□□□ -1.31
LIMA1-206ENST00000550611 FANCD2Q9BXW9 1451 aa6.86□□□□□ -1.31
LIMA1-206ENST00000550611 CD33P20138 364 aa6.86□□□□□ -1.31
LIMA1-206ENST00000550611 PLA2G4AP47712 749 aa6.86□□□□□ -1.31
LIMA1-206ENST00000550611 PCMTD1Q96MG8 357 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-206ENST00000550611 ETNK1Q9HBU6 452 aa6.86□□□□□ -1.31
LIMA1-206ENST00000550611 FAM157BP0CG42 384 aa6.85□□□□□ -1.31
LIMA1-206ENST00000550611 USP4Q13107 963 aa6.85□□□□□ -1.31
LIMA1-206ENST00000550611 PRRT3Q5FWE3 981 aa6.85□□□□□ -1.31
LIMA1-206ENST00000550611 DCDC2BA2VCK2 349 aa6.84□□□□□ -1.31
LIMA1-206ENST00000550611 MDFIQ99750 246 aa6.84□□□□□ -1.31
LIMA1-206ENST00000550611 NIFKQ9BYG3 293 aaKnown RBP6.84□□□□□ -1.31
LIMA1-206ENST00000550611 CFTRP13569 1480 aa6.84□□□□□ -1.31
LIMA1-206ENST00000550611 ELOA3CA0A087WX78 387 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-206ENST00000550611 A0A1W2PNR3 127 aa6.83□□□□□ -1.32
LIMA1-206ENST00000550611 ELOA3DA6NLF2 546 aaPredicted RBP6.83□□□□□ -1.32
LIMA1-206ENST00000550611 APBA3O96018 575 aa6.83□□□□□ -1.32
LIMA1-206ENST00000550611 PCBP4P57723 403 aaKnown RBP6.83□□□□□ -1.32
LIMA1-206ENST00000550611 ELOA3BQ3SY89 546 aa6.83□□□□□ -1.32
LIMA1-206ENST00000550611 ELOA3Q8NG57 546 aa6.83□□□□□ -1.32
LIMA1-206ENST00000550611 PRR12Q9ULL5 1215 aa6.83□□□□□ -1.32
LIMA1-206ENST00000550611 BTBD11A6QL63 1104 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 KHNYNO15037 678 aaKnown RBP6.82□□□□□ -1.32
LIMA1-206ENST00000550611 LAMC2Q13753 1193 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 PRSS36Q5K4E3 855 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 SAMD5Q5TGI4 173 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 ILDR2Q71H61 639 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 NBPF11Q86T75 865 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 PRDM6Q9NQX0 595 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 ZDHHC3Q9NYG2 299 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 NDUFB9Q9Y6M9 179 aa6.82□□□□□ -1.32
LIMA1-206ENST00000550611 AQRO60306 1485 aaKnown RBP eCLIP6.81□□□□□ -1.32
LIMA1-206ENST00000550611 EFSO43281 561 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 STAU1O95793 577 aaKnown RBP6.81□□□□□ -1.32
LIMA1-206ENST00000550611 ALAS2P22557 587 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 NBPF1Q3BBV0 1214 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 ARSJQ5FYB0 599 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-206ENST00000550611 ZNF295-AS1Q8N0V1 137 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 PHTF2Q8N3S3 785 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 BANK1Q8NDB2 785 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 AIDAQ96BJ3 306 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 SIRT1Q96EB6 747 aa6.81□□□□□ -1.32
LIMA1-206ENST00000550611 NACC1Q96RE7 527 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms