RNA–Protein interactions for RNA: ENST00000550219.1

NUP188-211, Transcript of nucleoporin 188, humanhuman

TSL 1 (best)

Gene NUP188, Length 886 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP188-211ENST00000550219 BRCA1P38398 1863 aaKnown RBP17.95■□□□□ 0.46
NUP188-211ENST00000550219 GNAT3A8MTJ3 354 aa17.94■□□□□ 0.46
NUP188-211ENST00000550219 CANXP27824 592 aaKnown RBP17.94■□□□□ 0.46
NUP188-211ENST00000550219 PRKAR2BP31323 418 aa17.94■□□□□ 0.46
NUP188-211ENST00000550219 ARHGAP27Q6ZUM4 889 aa17.94■□□□□ 0.46
NUP188-211ENST00000550219 POLRMTO00411 1230 aaKnown RBP17.93■□□□□ 0.46
NUP188-211ENST00000550219 SIPA1L3O60292 1781 aaPredicted RBP17.93■□□□□ 0.46
NUP188-211ENST00000550219 CHRNA5P30532 468 aa17.92■□□□□ 0.46
NUP188-211ENST00000550219 IL17REQ8NFR9 667 aa17.92■□□□□ 0.46
NUP188-211ENST00000550219 ZNF330Q9Y3S2 320 aaPredicted RBP17.92■□□□□ 0.46
NUP188-211ENST00000550219 VSIG10Q8N0Z9 540 aa17.91■□□□□ 0.46
NUP188-211ENST00000550219 ZNF496Q96IT1 587 aaPredicted RBP17.91■□□□□ 0.46
NUP188-211ENST00000550219 RSPH6AQ9H0K4 717 aa17.91■□□□□ 0.46
NUP188-211ENST00000550219 PIM2Q9P1W9 311 aa17.91■□□□□ 0.46
NUP188-211ENST00000550219 NARFQ9UHQ1 456 aa17.91■□□□□ 0.46
NUP188-211ENST00000550219 HEG1Q9ULI3 1381 aa17.91■□□□□ 0.46
NUP188-211ENST00000550219 SCN7AQ01118 1682 aa17.9■□□□□ 0.46
NUP188-211ENST00000550219 KCNA3P22001 575 aa17.9■□□□□ 0.46
NUP188-211ENST00000550219 PPP2R1AP30153 589 aa17.9■□□□□ 0.46
NUP188-211ENST00000550219 NFIXQ14938 502 aa17.9■□□□□ 0.46
NUP188-211ENST00000550219 PHACTR3Q96KR7 559 aa17.9■□□□□ 0.46
NUP188-211ENST00000550219 NUDCQ9Y266 331 aa17.9■□□□□ 0.46
NUP188-211ENST00000550219 ARFGEF1Q9Y6D6 1849 aa17.9■□□□□ 0.46
NUP188-211ENST00000550219 AFDNP55196 1824 aaKnown RBP17.89■□□□□ 0.45
NUP188-211ENST00000550219 STARD3NLO95772 234 aa17.89■□□□□ 0.45
NUP188-211ENST00000550219 U2AF1L5P0DN76 240 aaPredicted RBP17.89■□□□□ 0.45
NUP188-211ENST00000550219 TM4SF1P30408 202 aa17.89■□□□□ 0.45
NUP188-211ENST00000550219 U2AF1Q01081 240 aaKnown RBP eCLIP17.89■□□□□ 0.45
NUP188-211ENST00000550219 DALRD3Q5D0E6 543 aaKnown RBP17.89■□□□□ 0.45
NUP188-211ENST00000550219 ZNF790Q6PG37 636 aa17.89■□□□□ 0.45
NUP188-211ENST00000550219 BICDL1Q6ZP65 573 aa17.89■□□□□ 0.45
NUP188-211ENST00000550219 BCL2L12Q9HB09 334 aa17.88■□□□□ 0.45
NUP188-211ENST00000550219 NRXN2Q9P2S2 1712 aa17.87■□□□□ 0.45
NUP188-211ENST00000550219 DIEXFQ68CQ4 756 aaKnown RBP17.87■□□□□ 0.45
NUP188-211ENST00000550219 FMNL2Q96PY5 1086 aa17.87■□□□□ 0.45
NUP188-211ENST00000550219 CEMIPQ8WUJ3 1361 aa17.87■□□□□ 0.45
NUP188-211ENST00000550219 BTBD11A6QL63 1104 aa17.86■□□□□ 0.45
NUP188-211ENST00000550219 SERPINB2P05120 415 aa17.86■□□□□ 0.45
NUP188-211ENST00000550219 C9orf131Q5VYM1 1079 aa17.86■□□□□ 0.45
NUP188-211ENST00000550219 CARMIL3Q8ND23 1372 aa17.86■□□□□ 0.45
NUP188-211ENST00000550219 KIF3CO14782 793 aa17.85■□□□□ 0.45
NUP188-211ENST00000550219 KCNQ3O43525 872 aa17.85■□□□□ 0.45
NUP188-211ENST00000550219 A0A087WZG4 1122 aa17.84■□□□□ 0.45
NUP188-211ENST00000550219 EIF5P55010 431 aaKnown RBP17.84■□□□□ 0.45
NUP188-211ENST00000550219 MCM10Q7L590 875 aa17.84■□□□□ 0.45
NUP188-211ENST00000550219 RTF1Q92541 710 aaKnown RBP17.84■□□□□ 0.45
NUP188-211ENST00000550219 TEX13AQ9BXU3 409 aaPredicted RBP17.84■□□□□ 0.45
NUP188-211ENST00000550219 DLEC1Q9Y238 1755 aa17.84■□□□□ 0.45
NUP188-211ENST00000550219 NPM2Q86SE8 214 aaKnown RBP17.83■□□□□ 0.44
NUP188-211ENST00000550219 RNF181Q9P0P0 153 aa17.83■□□□□ 0.44
NUP188-211ENST00000550219 TBC1D2BQ9UPU7 963 aa17.83■□□□□ 0.44
NUP188-211ENST00000550219 A1BGP04217 495 aa17.82■□□□□ 0.44
NUP188-211ENST00000550219 PIP4K2AP48426 406 aaPredicted RBP17.82■□□□□ 0.44
NUP188-211ENST00000550219 RASSF7Q02833 373 aa17.82■□□□□ 0.44
NUP188-211ENST00000550219 DCTN1Q14203 1278 aa17.82■□□□□ 0.44
NUP188-211ENST00000550219 TBC1D9BQ66K14 1250 aa17.82■□□□□ 0.44
NUP188-211ENST00000550219 NMRK2Q9NPI5 230 aa17.82■□□□□ 0.44
NUP188-211ENST00000550219 BCORQ6W2J9 1755 aa17.81■□□□□ 0.44
NUP188-211ENST00000550219 HSPA6P17066 643 aa17.81■□□□□ 0.44
NUP188-211ENST00000550219 IL6STP40189 918 aaPredicted RBP17.81■□□□□ 0.44
NUP188-211ENST00000550219 RALBP1Q15311 655 aa17.81■□□□□ 0.44
NUP188-211ENST00000550219 C2CD5Q86YS7 1000 aa17.81■□□□□ 0.44
NUP188-211ENST00000550219 CCDC24Q8N4L8 307 aa17.81■□□□□ 0.44
NUP188-211ENST00000550219 PRKRIP1Q9H875 184 aaPredicted RBP17.81■□□□□ 0.44
NUP188-211ENST00000550219 COL11A2P13942 1736 aaPredicted RBP17.79■□□□□ 0.44
NUP188-211ENST00000550219 PRAMEF22A3QJZ6 481 aa17.79■□□□□ 0.44
NUP188-211ENST00000550219 NPHP1O15259 732 aa17.79■□□□□ 0.44
NUP188-211ENST00000550219 ANKRD31Q8N7Z5 1873 aa17.79■□□□□ 0.44
NUP188-211ENST00000550219 H0YIN7 160 aa17.78■□□□□ 0.44
NUP188-211ENST00000550219 ANP32CO43423 234 aa17.78■□□□□ 0.44
NUP188-211ENST00000550219 DZIP3Q86Y13 1208 aaKnown RBP17.78■□□□□ 0.44
NUP188-211ENST00000550219 CAMTA2O94983 1202 aa17.77■□□□□ 0.44
NUP188-211ENST00000550219 NEFMP07197 916 aa17.77■□□□□ 0.44
NUP188-211ENST00000550219 TTLL6Q8N841 843 aa17.77■□□□□ 0.44
NUP188-211ENST00000550219 USP16Q9Y5T5 823 aa17.77■□□□□ 0.44
NUP188-211ENST00000550219 TIAM2Q8IVF5 1701 aa17.76■□□□□ 0.43
NUP188-211ENST00000550219 PRR5LQ6MZQ0 368 aa17.76■□□□□ 0.43
NUP188-211ENST00000550219 C16orf71Q8IYS4 520 aaPredicted RBP17.76■□□□□ 0.43
NUP188-211ENST00000550219 CNBD1Q8NA66 436 aa17.76■□□□□ 0.43
NUP188-211ENST00000550219 ZNF622Q969S3 477 aaKnown RBP eCLIP17.76■□□□□ 0.433e-7■□□□□ 8.4
NUP188-211ENST00000550219 ZNF219Q9P2Y4 722 aaPredicted RBP17.76■□□□□ 0.43
NUP188-211ENST00000550219 LAMB4A4D0S4 1761 aa17.76■□□□□ 0.43
NUP188-211ENST00000550219 KDM2BQ8NHM5 1336 aa17.75■□□□□ 0.43
NUP188-211ENST00000550219 TNRC6CQ9HCJ0 1690 aaKnown RBP17.75■□□□□ 0.43
NUP188-211ENST00000550219 TOMM70O94826 608 aa17.75■□□□□ 0.43
NUP188-211ENST00000550219 SNRPA1P09661 255 aaKnown RBP17.75■□□□□ 0.43
NUP188-211ENST00000550219 SETDB2Q96T68 719 aa17.75■□□□□ 0.43
NUP188-211ENST00000550219 SBF1O95248 1867 aa17.74■□□□□ 0.43
NUP188-211ENST00000550219 MIS18AQ9NYP9 233 aa17.74■□□□□ 0.43
NUP188-211ENST00000550219 DLG5Q8TDM6 1919 aa17.73■□□□□ 0.43
NUP188-211ENST00000550219 HTATSF1O43719 755 aaKnown RBP17.73■□□□□ 0.43
NUP188-211ENST00000550219 PDE6BP35913 854 aa17.73■□□□□ 0.43
NUP188-211ENST00000550219 ST5P78524 1137 aa17.73■□□□□ 0.43
NUP188-211ENST00000550219 BRIP1Q9BX63 1249 aa17.73■□□□□ 0.43
NUP188-211ENST00000550219 CACNA1SQ13698 1873 aa17.73■□□□□ 0.43
NUP188-211ENST00000550219 KDM3BQ7LBC6 1761 aa17.72■□□□□ 0.43
NUP188-211ENST00000550219 LMNB1P20700 586 aa17.72■□□□□ 0.43
NUP188-211ENST00000550219 MYBBP1AQ9BQG0 1328 aaKnown RBP17.72■□□□□ 0.43
NUP188-211ENST00000550219 MAPK8IP3Q9UPT6 1336 aa17.72■□□□□ 0.43
NUP188-211ENST00000550219 NFKBIEO00221 500 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 176.3 ms