RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 MYH14Q7Z406 1995 aaKnown RBP17.62■□□□□ 0.41
SCAF11-208ENST00000546534 TNS4Q8IZW8 715 aa17.61■□□□□ 0.41
SCAF11-208ENST00000546534 SMC1BQ8NDV3 1235 aa17.6■□□□□ 0.41
SCAF11-208ENST00000546534 POLRMTO00411 1230 aaKnown RBP17.59■□□□□ 0.41
SCAF11-208ENST00000546534 TM4SF1P30408 202 aa17.58■□□□□ 0.4
SCAF11-208ENST00000546534 MTHFSP49914 203 aa17.58■□□□□ 0.4
SCAF11-208ENST00000546534 AMOTQ4VCS5 1084 aa17.58■□□□□ 0.4
SCAF11-208ENST00000546534 NFATC2IPQ8NCF5 419 aa17.58■□□□□ 0.4
SCAF11-208ENST00000546534 RASSF7Q02833 373 aa17.57■□□□□ 0.4
SCAF11-208ENST00000546534 INTS5Q6P9B9 1019 aaKnown RBP17.57■□□□□ 0.4
SCAF11-208ENST00000546534 TNRC6CQ9HCJ0 1690 aaKnown RBP17.57■□□□□ 0.4
SCAF11-208ENST00000546534 PRELPP51888 382 aa17.56■□□□□ 0.4
SCAF11-208ENST00000546534 C1orf141Q5JVX7 400 aa17.55■□□□□ 0.4
SCAF11-208ENST00000546534 AEBP1Q8IUX7 1158 aa17.55■□□□□ 0.4
SCAF11-208ENST00000546534 SBF1O95248 1867 aa17.54■□□□□ 0.4
SCAF11-208ENST00000546534 ZC3H4Q9UPT8 1303 aaKnown RBP17.54■□□□□ 0.4
SCAF11-208ENST00000546534 VEGFAP15692 232 aaPredicted RBP17.54■□□□□ 0.4
SCAF11-208ENST00000546534 USPL1Q5W0Q7 1092 aa17.54■□□□□ 0.4
SCAF11-208ENST00000546534 TJP1Q07157 1748 aa17.54■□□□□ 0.4
SCAF11-208ENST00000546534 ADAMTS7Q9UKP4 1686 aa17.53■□□□□ 0.4
SCAF11-208ENST00000546534 GLTPD2A6NH11 291 aa17.53■□□□□ 0.4
SCAF11-208ENST00000546534 ZPR1O75312 459 aa17.53■□□□□ 0.4
SCAF11-208ENST00000546534 LMNB1P20700 586 aa17.53■□□□□ 0.4
SCAF11-208ENST00000546534 POLR3GLQ9BT43 218 aa17.53■□□□□ 0.4
SCAF11-208ENST00000546534 HSPA1AP0DMV8 641 aaKnown RBP17.52■□□□□ 0.4
SCAF11-208ENST00000546534 HSPA1BP0DMV9 641 aaKnown RBP17.52■□□□□ 0.4
SCAF11-208ENST00000546534 DNAJC10Q8IXB1 793 aa17.52■□□□□ 0.4
SCAF11-208ENST00000546534 SOS1Q07889 1333 aaPredicted RBP17.51■□□□□ 0.39
SCAF11-208ENST00000546534 NFIXQ14938 502 aa17.51■□□□□ 0.39
SCAF11-208ENST00000546534 CYP19A1P11511 503 aaPredicted RBP17.49■□□□□ 0.39
SCAF11-208ENST00000546534 SULT6B1Q6IMI4 303 aa17.49■□□□□ 0.39
SCAF11-208ENST00000546534 TTLL6Q8N841 843 aa17.49■□□□□ 0.39
SCAF11-208ENST00000546534 NARFQ9UHQ1 456 aa17.49■□□□□ 0.39
SCAF11-208ENST00000546534 POTECB2RU33 542 aa17.48■□□□□ 0.39
SCAF11-208ENST00000546534 NFKBIEO00221 500 aa17.48■□□□□ 0.39
SCAF11-208ENST00000546534 SERPINB2P05120 415 aa17.48■□□□□ 0.39
SCAF11-208ENST00000546534 BCL2L12Q9HB09 334 aa17.48■□□□□ 0.39
SCAF11-208ENST00000546534 C2CD5Q86YS7 1000 aa17.47■□□□□ 0.39
SCAF11-208ENST00000546534 SLC52A2Q9HAB3 445 aa17.47■□□□□ 0.39
SCAF11-208ENST00000546534 COL15A1P39059 1388 aa17.46■□□□□ 0.39
SCAF11-208ENST00000546534 SLC39A6Q13433 755 aa17.46■□□□□ 0.39
SCAF11-208ENST00000546534 LGR6Q9HBX8 967 aa17.46■□□□□ 0.39
SCAF11-208ENST00000546534 ZBTB1Q9Y2K1 713 aa17.46■□□□□ 0.39
SCAF11-208ENST00000546534 AFDNP55196 1824 aaKnown RBP17.45■□□□□ 0.38
SCAF11-208ENST00000546534 CARMIL3Q8ND23 1372 aa17.45■□□□□ 0.38
SCAF11-208ENST00000546534 PCNTO95613 3336 aa17.45■□□□□ 0.38
SCAF11-208ENST00000546534 NRXN2Q9P2S2 1712 aa17.45■□□□□ 0.38
SCAF11-208ENST00000546534 AKAP4Q5JQC9 854 aa17.45■□□□□ 0.38
SCAF11-208ENST00000546534 PANK3Q9H999 370 aa17.45■□□□□ 0.38
SCAF11-208ENST00000546534 SCN11AQ9UI33 1791 aa17.44■□□□□ 0.38
SCAF11-208ENST00000546534 H0YIN7 160 aa17.44■□□□□ 0.38
SCAF11-208ENST00000546534 DPY19L2Q6NUT2 758 aa17.44■□□□□ 0.38
SCAF11-208ENST00000546534 MORC1Q86VD1 984 aa17.44■□□□□ 0.38
SCAF11-208ENST00000546534 IL13P35225 146 aa17.43■□□□□ 0.38
SCAF11-208ENST00000546534 TIAM2Q8IVF5 1701 aa17.43■□□□□ 0.38
SCAF11-208ENST00000546534 DLEC1Q9Y238 1755 aa17.43■□□□□ 0.38
SCAF11-208ENST00000546534 RNMTO43148 476 aaKnown RBP17.42■□□□□ 0.38
SCAF11-208ENST00000546534 BICDL1Q6ZP65 573 aa17.42■□□□□ 0.38
SCAF11-208ENST00000546534 CANXP27824 592 aaKnown RBP17.41■□□□□ 0.38
SCAF11-208ENST00000546534 MRC1P22897 1456 aa17.4■□□□□ 0.38
SCAF11-208ENST00000546534 SPDYE4A6NLX3 237 aa17.4■□□□□ 0.38
SCAF11-208ENST00000546534 C21orf2O43822 256 aa17.4■□□□□ 0.38
SCAF11-208ENST00000546534 ERFEQ4G0M1 354 aa17.4■□□□□ 0.38
SCAF11-208ENST00000546534 ZNF622Q969S3 477 aaKnown RBP eCLIP17.4■□□□□ 0.382e-6■■■□□ 15.2
SCAF11-208ENST00000546534 MKRN1Q9UHC7 482 aaKnown RBP17.4■□□□□ 0.38
SCAF11-208ENST00000546534 CHADLQ6NUI6 762 aa17.39■□□□□ 0.37
SCAF11-208ENST00000546534 VSIG10Q8N0Z9 540 aa17.39■□□□□ 0.37
SCAF11-208ENST00000546534 CREBZFQ9NS37 354 aa17.39■□□□□ 0.37
SCAF11-208ENST00000546534 CCDC88AQ3V6T2 1871 aa17.39■□□□□ 0.37
SCAF11-208ENST00000546534 POTEIP0CG38 1075 aa17.38■□□□□ 0.37
SCAF11-208ENST00000546534 POTEJP0CG39 1038 aa17.38■□□□□ 0.37
SCAF11-208ENST00000546534 CCDC24Q8N4L8 307 aa17.38■□□□□ 0.37
SCAF11-208ENST00000546534 EIF5P55010 431 aaKnown RBP17.37■□□□□ 0.37
SCAF11-208ENST00000546534 TBC1D9BQ66K14 1250 aa17.37■□□□□ 0.37
SCAF11-208ENST00000546534 BRIP1Q9BX63 1249 aa17.37■□□□□ 0.37
SCAF11-208ENST00000546534 TIMELESSQ9UNS1 1208 aa17.37■□□□□ 0.37
SCAF11-208ENST00000546534 DDNO94850 711 aaPredicted RBP17.36■□□□□ 0.37
SCAF11-208ENST00000546534 HMOX1P09601 288 aa17.36■□□□□ 0.37
SCAF11-208ENST00000546534 PDE6BP35913 854 aa17.36■□□□□ 0.37
SCAF11-208ENST00000546534 MTHFSDQ2M296 383 aaKnown RBP17.36■□□□□ 0.37
SCAF11-208ENST00000546534 A0A087WZG4 1122 aa17.35■□□□□ 0.37
SCAF11-208ENST00000546534 FOXN1O15353 648 aa17.35■□□□□ 0.37
SCAF11-208ENST00000546534 STARD3NLO95772 234 aa17.35■□□□□ 0.37
SCAF11-208ENST00000546534 PRR5LQ6MZQ0 368 aa17.35■□□□□ 0.37
SCAF11-208ENST00000546534 PDZRN3Q9UPQ7 1066 aa17.35■□□□□ 0.37
SCAF11-208ENST00000546534 LTBP3Q9NS15 1303 aa17.35■□□□□ 0.37
SCAF11-208ENST00000546534 HSPA5P11021 654 aaKnown RBP17.34■□□□□ 0.37
SCAF11-208ENST00000546534 ANKRD31Q8N7Z5 1873 aa17.34■□□□□ 0.37
SCAF11-208ENST00000546534 TAOK3Q9H2K8 898 aa17.34■□□□□ 0.37
SCAF11-208ENST00000546534 EIF4G2P78344 907 aaKnown RBP eCLIP17.33■□□□□ 0.36
SCAF11-208ENST00000546534 TBC1D2BQ9UPU7 963 aa17.33■□□□□ 0.36
SCAF11-208ENST00000546534 KNSTRNQ9Y448 316 aa17.33■□□□□ 0.36
SCAF11-208ENST00000546534 CNTNAP1P78357 1384 aa17.32■□□□□ 0.36
SCAF11-208ENST00000546534 TTC5Q8N0Z6 440 aa17.32■□□□□ 0.36
SCAF11-208ENST00000546534 ZNF330Q9Y3S2 320 aaPredicted RBP17.32■□□□□ 0.36
SCAF11-208ENST00000546534 FER1L6Q2WGJ9 1857 aa17.32■□□□□ 0.36
SCAF11-208ENST00000546534 COL11A2P13942 1736 aaPredicted RBP17.32■□□□□ 0.36
SCAF11-208ENST00000546534 ZNF496Q96IT1 587 aaPredicted RBP17.31■□□□□ 0.36
SCAF11-208ENST00000546534 PRDM10Q9NQV6 1147 aa17.31■□□□□ 0.36
SCAF11-208ENST00000546534 DICER1Q9UPY3 1922 aaKnown RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms