RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 PTMSP20962 102 aa18.25■□□□□ 0.51
USP28-214ENST00000545540 PLCB2Q00722 1185 aa18.25■□□□□ 0.51
USP28-214ENST00000545540 TCEANC2Q96MN5 208 aa18.25■□□□□ 0.51
USP28-214ENST00000545540 CHMP3Q9Y3E7 222 aa18.25■□□□□ 0.51
USP28-214ENST00000545540 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.25■□□□□ 0.51
USP28-214ENST00000545540 ZNF445P59923 1031 aa18.24■□□□□ 0.51
USP28-214ENST00000545540 CCDC9Q9Y3X0 531 aaKnown RBP18.24■□□□□ 0.51
USP28-214ENST00000545540 ESCO1Q5FWF5 840 aa18.24■□□□□ 0.51
USP28-214ENST00000545540 SIL1Q9H173 461 aa18.24■□□□□ 0.51
USP28-214ENST00000545540 ZSCAN30Q86W11 494 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 KLHDC4Q8TBB5 520 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 ZNF830Q96NB3 372 aaPredicted RBP18.23■□□□□ 0.51
USP28-214ENST00000545540 R3HCC1Q9Y3T6 440 aaKnown RBP18.23■□□□□ 0.51
USP28-214ENST00000545540 AGLP35573 1532 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 USP48Q86UV5 1035 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 CNPY2Q9Y2B0 182 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 LARGE1O95461 756 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 BRD1O95696 1058 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 TTC21AQ8NDW8 1320 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 PPP1R9BQ96SB3 815 aa18.23■□□□□ 0.51
USP28-214ENST00000545540 MAP3K5Q99683 1374 aa18.22■□□□□ 0.51
USP28-214ENST00000545540 TEFQ10587 303 aa18.22■□□□□ 0.51
USP28-214ENST00000545540 KDRP35968 1356 aa18.22■□□□□ 0.51
USP28-214ENST00000545540 RGPD8O14715 1765 aaPredicted RBP18.22■□□□□ 0.51
USP28-214ENST00000545540 AKAP12Q02952 1782 aa18.22■□□□□ 0.51
USP28-214ENST00000545540 ZNF530Q6P9A1 599 aaPredicted RBP18.21■□□□□ 0.51
USP28-214ENST00000545540 PI4K2BQ8TCG2 481 aa18.21■□□□□ 0.51
USP28-214ENST00000545540 BTBD11A6QL63 1104 aa18.21■□□□□ 0.51
USP28-214ENST00000545540 FIBPO43427 364 aa18.21■□□□□ 0.51
USP28-214ENST00000545540 SSH2Q76I76 1423 aa18.21■□□□□ 0.51
USP28-214ENST00000545540 AK2P54819 239 aa18.21■□□□□ 0.51
USP28-214ENST00000545540 PTH1RQ03431 593 aa18.21■□□□□ 0.51
USP28-214ENST00000545540 PSME1Q06323 249 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 HSP90AA2PQ14568 343 aaPredicted RBP18.2■□□□□ 0.5
USP28-214ENST00000545540 ADCK5Q3MIX3 580 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 SSH3Q8TE77 659 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 DNAAF4Q8WXU2 420 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 C9orf78Q9NZ63 289 aaPredicted RBP18.2■□□□□ 0.5
USP28-214ENST00000545540 SNX14Q9Y5W7 946 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 CASTP20810 708 aaKnown RBP18.2■□□□□ 0.5
USP28-214ENST00000545540 EIF4A1P60842 406 aaKnown RBP18.2■□□□□ 0.5
USP28-214ENST00000545540 NECAB1Q8N987 351 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 PLEKHG1Q9ULL1 1385 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 LRSAM1Q6UWE0 723 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 CCDC8Q9H0W5 538 aaPredicted RBP18.2■□□□□ 0.5
USP28-214ENST00000545540 NDUFB9Q9Y6M9 179 aa18.2■□□□□ 0.5
USP28-214ENST00000545540 PRPF40BQ6NWY9 871 aaKnown RBP18.19■□□□□ 0.5
USP28-214ENST00000545540 CCDC83Q8IWF9 413 aa18.19■□□□□ 0.5
USP28-214ENST00000545540 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.19■□□□□ 0.5
USP28-214ENST00000545540 MAP3K2Q9Y2U5 619 aa18.19■□□□□ 0.5
USP28-214ENST00000545540 PTMAP06454 111 aaKnown RBP18.19■□□□□ 0.5
USP28-214ENST00000545540 FAM173BQ6P4H8 233 aa18.19■□□□□ 0.5
USP28-214ENST00000545540 SLC39A6Q13433 755 aa18.18■□□□□ 0.5
USP28-214ENST00000545540 STAP2Q9UGK3 403 aa18.18■□□□□ 0.5
USP28-214ENST00000545540 BEND3Q5T5X7 828 aa18.18■□□□□ 0.5
USP28-214ENST00000545540 CUL4AQ13619 759 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 RUFY3Q7L099 469 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 C17orf53Q8N3J3 647 aaPredicted RBP18.17■□□□□ 0.5
USP28-214ENST00000545540 PHF8Q9UPP1 1060 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.17■□□□□ 0.5
USP28-214ENST00000545540 CHGBP05060 677 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 HSPA4P34932 840 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 FERMT3Q86UX7 667 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 EDC3Q96F86 508 aaKnown RBP18.17■□□□□ 0.5
USP28-214ENST00000545540 TBX22Q9Y458 520 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 NRKQ7Z2Y5 1582 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 SGSM2O43147 1006 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 MYL6BP14649 208 aa18.17■□□□□ 0.5
USP28-214ENST00000545540 DIAPH3Q9NSV4 1193 aa18.16■□□□□ 0.5
USP28-214ENST00000545540 KIF1BPQ96EK5 621 aa18.16■□□□□ 0.5
USP28-214ENST00000545540 FAM227BQ96M60 508 aa18.16■□□□□ 0.5
USP28-214ENST00000545540 JAKMIP1Q96N16 626 aaKnown RBP18.16■□□□□ 0.5
USP28-214ENST00000545540 ORAI2Q96SN7 254 aa18.16■□□□□ 0.5
USP28-214ENST00000545540 KCNJ4P48050 445 aa18.16■□□□□ 0.5
USP28-214ENST00000545540 PPFIA3O75145 1194 aa18.15■□□□□ 0.5
USP28-214ENST00000545540 TLR7Q9NYK1 1049 aaKnown RBP18.15■□□□□ 0.5
USP28-214ENST00000545540 TAF6LQ9Y6J9 622 aa18.15■□□□□ 0.5
USP28-214ENST00000545540 VPS37CA5D8V6 355 aaPredicted RBP18.15■□□□□ 0.5
USP28-214ENST00000545540 AACSQ86V21 672 aa18.15■□□□□ 0.5
USP28-214ENST00000545540 LSG1Q9H089 658 aaKnown RBP18.15■□□□□ 0.5
USP28-214ENST00000545540 SYT1P21579 422 aa18.14■□□□□ 0.5
USP28-214ENST00000545540 CNTROBQ8N137 903 aa18.14■□□□□ 0.5
USP28-214ENST00000545540 USP25Q9UHP3 1055 aa18.14■□□□□ 0.5
USP28-214ENST00000545540 THEMISQ8N1K5 641 aaPredicted RBP18.14■□□□□ 0.49
USP28-214ENST00000545540 BOLA2Q9H3K6 86 aa18.14■□□□□ 0.49
USP28-214ENST00000545540 HCLS1P14317 486 aaPredicted RBP18.14■□□□□ 0.49
USP28-214ENST00000545540 FAM13BQ9NYF5 915 aa18.14■□□□□ 0.49
USP28-214ENST00000545540 ZC3H6P61129 1189 aaKnown RBP18.13■□□□□ 0.49
USP28-214ENST00000545540 TCHHQ07283 1943 aa18.13■□□□□ 0.49
USP28-214ENST00000545540 STK3Q13188 491 aa18.13■□□□□ 0.49
USP28-214ENST00000545540 GIMAP6Q6P9H5 292 aa18.13■□□□□ 0.49
USP28-214ENST00000545540 TSPY26PQ9H489 355 aa18.13■□□□□ 0.49
USP28-214ENST00000545540 UBR1Q8IWV7 1749 aa18.13■□□□□ 0.49
USP28-214ENST00000545540 HTATSF1O43719 755 aaKnown RBP18.13■□□□□ 0.49
USP28-214ENST00000545540 IFIT2P09913 472 aaKnown RBP18.13■□□□□ 0.49
USP28-214ENST00000545540 POLA2Q14181 598 aa18.13■□□□□ 0.49
USP28-214ENST00000545540 SMC3Q9UQE7 1217 aa18.13■□□□□ 0.49
USP28-214ENST00000545540 MCM2P49736 904 aa18.12■□□□□ 0.49
USP28-214ENST00000545540 DNM1Q05193 864 aaKnown RBP18.12■□□□□ 0.49
USP28-214ENST00000545540 CLASRPQ8N2M8 674 aaKnown RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms