RNA–Protein interactions for RNA: ENST00000544223.6

HCFC2-202, Transcript of host cell factor C2, humanhuman

TSL 2

Gene HCFC2, Length 2,538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-202ENST00000544223 SHANK3Q9BYB0 1731 aa17.11■□□□□ 0.33
HCFC2-202ENST00000544223 ABCC6O95255 1503 aa17.11■□□□□ 0.33
HCFC2-202ENST00000544223 GNAI2P04899 355 aa17.11■□□□□ 0.33
HCFC2-202ENST00000544223 TSHZ3Q63HK5 1081 aa17.11■□□□□ 0.33
HCFC2-202ENST00000544223 SRCIN1Q9C0H9 1055 aa17.11■□□□□ 0.33
HCFC2-202ENST00000544223 CHMP4BQ9H444 224 aaKnown RBP17.11■□□□□ 0.33
HCFC2-202ENST00000544223 PARP4Q9UKK3 1724 aaKnown RBP17.1■□□□□ 0.33
HCFC2-202ENST00000544223 HOXB7P09629 217 aa17.1■□□□□ 0.33
HCFC2-202ENST00000544223 SYTL4Q96C24 671 aaPredicted RBP17.1■□□□□ 0.33
HCFC2-202ENST00000544223 DCTPP1Q9H773 170 aa17.1■□□□□ 0.33
HCFC2-202ENST00000544223 COPS6Q7L5N1 327 aa17.1■□□□□ 0.33
HCFC2-202ENST00000544223 XAGE3Q8WTP9 111 aa17.1■□□□□ 0.33
HCFC2-202ENST00000544223 GCC1Q96CN9 775 aa17.1■□□□□ 0.33
HCFC2-202ENST00000544223 CCDC9Q9Y3X0 531 aaKnown RBP17.09■□□□□ 0.33
HCFC2-202ENST00000544223 UBTFL1P0CB47 393 aaPredicted RBP17.09■□□□□ 0.33
HCFC2-202ENST00000544223 ASAP1Q9ULH1 1129 aa17.09■□□□□ 0.33
HCFC2-202ENST00000544223 AHDC1Q5TGY3 1603 aaPredicted RBP17.08■□□□□ 0.33
HCFC2-202ENST00000544223 A1BGP04217 495 aa17.08■□□□□ 0.33
HCFC2-202ENST00000544223 FMNL2Q96PY5 1086 aa17.08■□□□□ 0.33
HCFC2-202ENST00000544223 ZNF330Q9Y3S2 320 aaPredicted RBP17.08■□□□□ 0.33
HCFC2-202ENST00000544223 RPAP2Q8IXW5 612 aaPredicted RBP17.08■□□□□ 0.32
HCFC2-202ENST00000544223 IPO9Q96P70 1041 aaKnown RBP17.08■□□□□ 0.32
HCFC2-202ENST00000544223 DDX21Q9NR30 783 aaKnown RBP eCLIP17.08■□□□□ 0.32
HCFC2-202ENST00000544223 SOS1Q07889 1333 aaPredicted RBP17.07■□□□□ 0.32
HCFC2-202ENST00000544223 TOM1O60784 492 aa17.07■□□□□ 0.32
HCFC2-202ENST00000544223 HSP90AB1P08238 724 aaKnown RBP17.07■□□□□ 0.32
HCFC2-202ENST00000544223 SNRPA1P09661 255 aaKnown RBP17.07■□□□□ 0.32
HCFC2-202ENST00000544223 PIGBQ92521 554 aa17.06■□□□□ 0.32
HCFC2-202ENST00000544223 TOGARAM1Q9Y4F4 1720 aa17.06■□□□□ 0.32
HCFC2-202ENST00000544223 NBPF26B4DH59 902 aa17.06■□□□□ 0.32
HCFC2-202ENST00000544223 ATP5J2-PTCD1G3V325 749 aa17.06■□□□□ 0.32
HCFC2-202ENST00000544223 RTL5Q5HYW3 569 aaPredicted RBP17.06■□□□□ 0.32
HCFC2-202ENST00000544223 NBPF14Q5TI25 921 aa17.06■□□□□ 0.32
HCFC2-202ENST00000544223 NBPF10Q6P3W6 841 aaKnown RBP17.06■□□□□ 0.32
HCFC2-202ENST00000544223 KSR2Q6VAB6 950 aa17.06■□□□□ 0.32
HCFC2-202ENST00000544223 RIC3Q7Z5B4 369 aa17.06■□□□□ 0.32
HCFC2-202ENST00000544223 NBPF15Q8N660 670 aa17.06■□□□□ 0.32
HCFC2-202ENST00000544223 GNAI3P08754 354 aa17.05■□□□□ 0.32
HCFC2-202ENST00000544223 MFAP1P55081 439 aaKnown RBP17.05■□□□□ 0.32
HCFC2-202ENST00000544223 HYPKQ9NX55 129 aa17.05■□□□□ 0.32
HCFC2-202ENST00000544223 MRC1P22897 1456 aa17.05■□□□□ 0.32
HCFC2-202ENST00000544223 PPP1R42Q7Z4L9 355 aa17.05■□□□□ 0.32
HCFC2-202ENST00000544223 IGKV5-2P06315 115 aa17.04■□□□□ 0.32
HCFC2-202ENST00000544223 LRP10Q7Z4F1 713 aa17.04■□□□□ 0.32
HCFC2-202ENST00000544223 PLEKHM2Q8IWE5 1019 aa17.04■□□□□ 0.32
HCFC2-202ENST00000544223 ACSBG1Q96GR2 724 aa17.04■□□□□ 0.32
HCFC2-202ENST00000544223 C8orf37Q96NL8 207 aa17.04■□□□□ 0.32
HCFC2-202ENST00000544223 TMOD3Q9NYL9 352 aa17.04■□□□□ 0.32
HCFC2-202ENST00000544223 GSPT1P15170 499 aaKnown RBP17.04■□□□□ 0.32
HCFC2-202ENST00000544223 MYD88Q99836 296 aa17.04■□□□□ 0.32
HCFC2-202ENST00000544223 RBM42Q9BTD8 480 aaKnown RBP17.04■□□□□ 0.32
HCFC2-202ENST00000544223 IL1RAPL2Q9NP60 686 aa17.04■□□□□ 0.32
HCFC2-202ENST00000544223 C9orf78Q9NZ63 289 aaPredicted RBP17.04■□□□□ 0.32
HCFC2-202ENST00000544223 COL14A1Q05707 1796 aaKnown RBP17.04■□□□□ 0.32
HCFC2-202ENST00000544223 GOLGB1Q14789 3259 aaKnown RBP17.04■□□□□ 0.32
HCFC2-202ENST00000544223 GLI3P10071 1580 aa17.03■□□□□ 0.32
HCFC2-202ENST00000544223 ERVV-2B6SEH9 535 aa17.03■□□□□ 0.32
HCFC2-202ENST00000544223 SRGAP3O43295 1099 aa17.03■□□□□ 0.32
HCFC2-202ENST00000544223 ATP8B2P98198 1209 aa17.03■□□□□ 0.32
HCFC2-202ENST00000544223 NKX1-1Q15270 411 aaPredicted RBP17.03■□□□□ 0.32
HCFC2-202ENST00000544223 TTLL7Q6ZT98 887 aa17.03■□□□□ 0.32
HCFC2-202ENST00000544223 ARXQ96QS3 562 aa17.02■□□□□ 0.32
HCFC2-202ENST00000544223 PLCH1Q4KWH8 1693 aa17.02■□□□□ 0.31
HCFC2-202ENST00000544223 EXOC5O00471 708 aa17.01■□□□□ 0.31
HCFC2-202ENST00000544223 PA2G4Q9UQ80 394 aaKnown RBP17.01■□□□□ 0.31
HCFC2-202ENST00000544223 COL22A1Q8NFW1 1626 aaPredicted RBP17.01■□□□□ 0.31
HCFC2-202ENST00000544223 ANKRD13DQ6ZTN6 518 aa17.01■□□□□ 0.31
HCFC2-202ENST00000544223 KLHDC4Q8TBB5 520 aa17.01■□□□□ 0.31
HCFC2-202ENST00000544223 ZBTB3Q9H5J0 574 aa17.01■□□□□ 0.31
HCFC2-202ENST00000544223 HMMRO75330 724 aa17■□□□□ 0.31
HCFC2-202ENST00000544223 PRIM1P49642 420 aaKnown RBP17■□□□□ 0.31
HCFC2-202ENST00000544223 ZBTB47Q9UFB7 747 aaPredicted RBP17■□□□□ 0.31
HCFC2-202ENST00000544223 NOP58Q9Y2X3 529 aaKnown RBP17■□□□□ 0.31
HCFC2-202ENST00000544223 KAZALD1Q96I82 304 aa17■□□□□ 0.31
HCFC2-202ENST00000544223 SUCLG2Q96I99 432 aa17■□□□□ 0.31
HCFC2-202ENST00000544223 ATG3Q9NT62 314 aa17■□□□□ 0.31
HCFC2-202ENST00000544223 KCPQ6ZWJ8 1503 aa16.99■□□□□ 0.31
HCFC2-202ENST00000544223 PXDNLA1KZ92 1463 aa16.99■□□□□ 0.31
HCFC2-202ENST00000544223 SURF6O75683 361 aaKnown RBP16.99■□□□□ 0.31
HCFC2-202ENST00000544223 DNAJC10Q8IXB1 793 aa16.99■□□□□ 0.31
HCFC2-202ENST00000544223 SPATA31A1Q5TZJ5 1347 aa16.99■□□□□ 0.31
HCFC2-202ENST00000544223 FAM182BQ5T319 152 aa16.99■□□□□ 0.31
HCFC2-202ENST00000544223 SLC4A9Q96Q91 983 aa16.99■□□□□ 0.31
HCFC2-202ENST00000544223 DISP2A7MBM2 1401 aa16.98■□□□□ 0.31
HCFC2-202ENST00000544223 N4BP2Q86UW6 1770 aaPredicted RBP16.98■□□□□ 0.31
HCFC2-202ENST00000544223 FAM98CQ17RN3 349 aaKnown RBP16.98■□□□□ 0.31
HCFC2-202ENST00000544223 EPHA10Q5JZY3 1008 aa16.98■□□□□ 0.31
HCFC2-202ENST00000544223 NUTM1Q86Y26 1132 aa16.98■□□□□ 0.31
HCFC2-202ENST00000544223 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.98■□□□□ 0.31
HCFC2-202ENST00000544223 DDX58O95786 925 aaKnown RBP16.98■□□□□ 0.31
HCFC2-202ENST00000544223 NGLY1Q96IV0 654 aa16.98■□□□□ 0.31
HCFC2-202ENST00000544223 BICC1Q9H694 974 aaKnown RBP16.98■□□□□ 0.31
HCFC2-202ENST00000544223 ITGB4P16144 1822 aa16.98■□□□□ 0.31
HCFC2-202ENST00000544223 NEURL1BA8MQ27 555 aa16.97■□□□□ 0.31
HCFC2-202ENST00000544223 ERICH6Q7L0X2 663 aa16.97■□□□□ 0.31
HCFC2-202ENST00000544223 LINS1Q8NG48 757 aa16.97■□□□□ 0.31
HCFC2-202ENST00000544223 GRM8O00222 908 aa16.97■□□□□ 0.31
HCFC2-202ENST00000544223 DDB1Q16531 1140 aa16.96■□□□□ 0.31
HCFC2-202ENST00000544223 BMP2KLQ5H9B9 411 aa16.96■□□□□ 0.31
HCFC2-202ENST00000544223 TBC1D9Q6ZT07 1266 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms