RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 U2AF1Q01081 240 aaKnown RBP eCLIP17.53■□□□□ 0.4
RTN3-213ENST00000543552 USPL1Q5W0Q7 1092 aa17.53■□□□□ 0.4
RTN3-213ENST00000543552 ZNF790Q6PG37 636 aa17.53■□□□□ 0.4
RTN3-213ENST00000543552 RSPH6AQ9H0K4 717 aa17.53■□□□□ 0.4
RTN3-213ENST00000543552 ZBTB1Q9Y2K1 713 aa17.53■□□□□ 0.4
RTN3-213ENST00000543552 CEMIPQ8WUJ3 1361 aa17.53■□□□□ 0.4
RTN3-213ENST00000543552 A0A087WZG4 1122 aa17.52■□□□□ 0.4
RTN3-213ENST00000543552 SENP3-EIF4A1A0A087X0R7 540 aa17.52■□□□□ 0.4
RTN3-213ENST00000543552 FCHSD2O94868 740 aa17.52■□□□□ 0.4
RTN3-213ENST00000543552 DDR1Q08345 913 aa17.52■□□□□ 0.4
RTN3-213ENST00000543552 IL17REQ8NFR9 667 aa17.52■□□□□ 0.4
RTN3-213ENST00000543552 FMNL2Q96PY5 1086 aa17.52■□□□□ 0.4
RTN3-213ENST00000543552 SIPA1L3O60292 1781 aaPredicted RBP17.52■□□□□ 0.4
RTN3-213ENST00000543552 HEG1Q9ULI3 1381 aa17.52■□□□□ 0.39
RTN3-213ENST00000543552 POLRMTO00411 1230 aaKnown RBP17.51■□□□□ 0.39
RTN3-213ENST00000543552 NPM2Q86SE8 214 aaKnown RBP17.51■□□□□ 0.39
RTN3-213ENST00000543552 RTF1Q92541 710 aaKnown RBP17.51■□□□□ 0.39
RTN3-213ENST00000543552 PIM2Q9P1W9 311 aa17.51■□□□□ 0.39
RTN3-213ENST00000543552 BRCA1P38398 1863 aaKnown RBP17.5■□□□□ 0.39
RTN3-213ENST00000543552 NEFMP07197 916 aa17.5■□□□□ 0.39
RTN3-213ENST00000543552 CANXP27824 592 aaKnown RBP17.5■□□□□ 0.39
RTN3-213ENST00000543552 TM4SF1P30408 202 aa17.5■□□□□ 0.39
RTN3-213ENST00000543552 ZNF496Q96IT1 587 aaPredicted RBP17.5■□□□□ 0.39
RTN3-213ENST00000543552 BTBD11A6QL63 1104 aa17.49■□□□□ 0.39
RTN3-213ENST00000543552 DALRD3Q5D0E6 543 aaKnown RBP17.49■□□□□ 0.39
RTN3-213ENST00000543552 ARHGAP27Q6ZUM4 889 aa17.49■□□□□ 0.39
RTN3-213ENST00000543552 PHACTR3Q96KR7 559 aa17.49■□□□□ 0.39
RTN3-213ENST00000543552 ZNF526Q8TF50 670 aaPredicted RBP17.48■□□□□ 0.39
RTN3-213ENST00000543552 ARFGEF1Q9Y6D6 1849 aa17.48■□□□□ 0.39
RTN3-213ENST00000543552 EIF5P55010 431 aaKnown RBP17.47■□□□□ 0.39
RTN3-213ENST00000543552 NFIXQ14938 502 aa17.47■□□□□ 0.39
RTN3-213ENST00000543552 HTATSF1O43719 755 aaKnown RBP17.46■□□□□ 0.39
RTN3-213ENST00000543552 KCNA3P22001 575 aa17.46■□□□□ 0.39
RTN3-213ENST00000543552 IL6STP40189 918 aaPredicted RBP17.46■□□□□ 0.39
RTN3-213ENST00000543552 NRXN2Q9P2S2 1712 aa17.45■□□□□ 0.38
RTN3-213ENST00000543552 ZNF330Q9Y3S2 320 aaPredicted RBP17.45■□□□□ 0.38
RTN3-213ENST00000543552 SCN7AQ01118 1682 aa17.45■□□□□ 0.38
RTN3-213ENST00000543552 SERPINB2P05120 415 aa17.44■□□□□ 0.38
RTN3-213ENST00000543552 BCL2L12Q9HB09 334 aa17.44■□□□□ 0.38
RTN3-213ENST00000543552 AFDNP55196 1824 aaKnown RBP17.44■□□□□ 0.38
RTN3-213ENST00000543552 CEP350Q5VT06 3117 aa17.43■□□□□ 0.38
RTN3-213ENST00000543552 CHRNA5P30532 468 aa17.43■□□□□ 0.38
RTN3-213ENST00000543552 PNNQ9H307 717 aaKnown RBP17.43■□□□□ 0.38
RTN3-213ENST00000543552 CARMIL3Q8ND23 1372 aa17.42■□□□□ 0.38
RTN3-213ENST00000543552 MCM10Q7L590 875 aa17.42■□□□□ 0.38
RTN3-213ENST00000543552 PDZRN3Q9UPQ7 1066 aa17.42■□□□□ 0.38
RTN3-213ENST00000543552 SNRPA1P09661 255 aaKnown RBP17.41■□□□□ 0.38
RTN3-213ENST00000543552 H0YIN7 160 aa17.4■□□□□ 0.38
RTN3-213ENST00000543552 C9orf131Q5VYM1 1079 aa17.4■□□□□ 0.38
RTN3-213ENST00000543552 BICDL1Q6ZP65 573 aa17.4■□□□□ 0.38
RTN3-213ENST00000543552 DLEC1Q9Y238 1755 aa17.4■□□□□ 0.38
RTN3-213ENST00000543552 NPHP1O15259 732 aa17.39■□□□□ 0.37
RTN3-213ENST00000543552 A1BGP04217 495 aa17.39■□□□□ 0.37
RTN3-213ENST00000543552 TAF7Q15545 349 aaPredicted RBP17.39■□□□□ 0.37
RTN3-213ENST00000543552 C2CD5Q86YS7 1000 aa17.39■□□□□ 0.37
RTN3-213ENST00000543552 TTLL6Q8N841 843 aa17.39■□□□□ 0.37
RTN3-213ENST00000543552 PNISRQ8TF01 805 aaKnown RBP17.39■□□□□ 0.37
RTN3-213ENST00000543552 SETDB2Q96T68 719 aa17.39■□□□□ 0.37
RTN3-213ENST00000543552 TBC1D2BQ9UPU7 963 aa17.39■□□□□ 0.37
RTN3-213ENST00000543552 ZNF652Q9Y2D9 606 aa17.39■□□□□ 0.37
RTN3-213ENST00000543552 KCNQ3O43525 872 aa17.38■□□□□ 0.37
RTN3-213ENST00000543552 PDE6BP35913 854 aa17.38■□□□□ 0.37
RTN3-213ENST00000543552 TBC1D9BQ66K14 1250 aa17.38■□□□□ 0.37
RTN3-213ENST00000543552 DZIP3Q86Y13 1208 aaKnown RBP17.38■□□□□ 0.37
RTN3-213ENST00000543552 MAPK8IP3Q9UPT6 1336 aa17.38■□□□□ 0.37
RTN3-213ENST00000543552 KIF3CO14782 793 aa17.37■□□□□ 0.37
RTN3-213ENST00000543552 CNBD1Q8NA66 436 aa17.37■□□□□ 0.37
RTN3-213ENST00000543552 BRIP1Q9BX63 1249 aa17.37■□□□□ 0.37
RTN3-213ENST00000543552 RNF181Q9P0P0 153 aa17.37■□□□□ 0.37
RTN3-213ENST00000543552 KDM2BQ8NHM5 1336 aa17.37■□□□□ 0.37
RTN3-213ENST00000543552 ZC3H4Q9UPT8 1303 aaKnown RBP17.37■□□□□ 0.37
RTN3-213ENST00000543552 BCORQ6W2J9 1755 aa17.37■□□□□ 0.37
RTN3-213ENST00000543552 RGL2O15211 777 aa17.36■□□□□ 0.37
RTN3-213ENST00000543552 CAMTA2O94983 1202 aa17.36■□□□□ 0.37
RTN3-213ENST00000543552 ST5P78524 1137 aa17.36■□□□□ 0.37
RTN3-213ENST00000543552 DCTN1Q14203 1278 aa17.36■□□□□ 0.37
RTN3-213ENST00000543552 RALBP1Q15311 655 aa17.36■□□□□ 0.37
RTN3-213ENST00000543552 CLEC4GQ6UXB4 293 aa17.36■□□□□ 0.37
RTN3-213ENST00000543552 USP16Q9Y5T5 823 aa17.36■□□□□ 0.37
RTN3-213ENST00000543552 HSPA6P17066 643 aa17.35■□□□□ 0.37
RTN3-213ENST00000543552 NFE2L2Q16236 605 aa17.35■□□□□ 0.37
RTN3-213ENST00000543552 PRR5LQ6MZQ0 368 aa17.35■□□□□ 0.37
RTN3-213ENST00000543552 LAMB4A4D0S4 1761 aa17.34■□□□□ 0.37
RTN3-213ENST00000543552 TOMM70O94826 608 aa17.34■□□□□ 0.37
RTN3-213ENST00000543552 C16orf71Q8IYS4 520 aaPredicted RBP17.34■□□□□ 0.37
RTN3-213ENST00000543552 LMNB1P20700 586 aa17.33■□□□□ 0.36
RTN3-213ENST00000543552 PLEKHF1Q96S99 279 aa17.33■□□□□ 0.36
RTN3-213ENST00000543552 DLG5Q8TDM6 1919 aa17.33■□□□□ 0.36
RTN3-213ENST00000543552 PRAMEF22A3QJZ6 481 aa17.32■□□□□ 0.36
RTN3-213ENST00000543552 NBPF5PQ86XG9 351 aaPredicted RBP17.32■□□□□ 0.36
RTN3-213ENST00000543552 ZNF622Q969S3 477 aaKnown RBP eCLIP17.32■□□□□ 0.365e-7■■■□□ 14.7
RTN3-213ENST00000543552 ANKRD31Q8N7Z5 1873 aa17.31■□□□□ 0.36
RTN3-213ENST00000543552 KDM3BQ7LBC6 1761 aa17.31■□□□□ 0.36
RTN3-213ENST00000543552 NMRK2Q9NPI5 230 aa17.31■□□□□ 0.36
RTN3-213ENST00000543552 TNRC6CQ9HCJ0 1690 aaKnown RBP17.31■□□□□ 0.36
RTN3-213ENST00000543552 SBF1O95248 1867 aa17.31■□□□□ 0.36
RTN3-213ENST00000543552 PIP4K2AP48426 406 aaPredicted RBP17.3■□□□□ 0.36
RTN3-213ENST00000543552 RASSF7Q02833 373 aa17.3■□□□□ 0.36
RTN3-213ENST00000543552 SOGA3Q5TF21 947 aa17.3■□□□□ 0.36
RTN3-213ENST00000543552 CNKSR1Q969H4 720 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms