RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 DDX17Q92841 729 aaKnown RBP7.01□□□□□ -1.29
CLIP1-217ENST00000543205 CABP1Q9NZU7 370 aa7.01□□□□□ -1.29
CLIP1-217ENST00000543205 ATP7BP35670 1465 aa7.01□□□□□ -1.29
CLIP1-217ENST00000543205 PPIP5K1Q6PFW1 1433 aa7.01□□□□□ -1.29
CLIP1-217ENST00000543205 XPCQ01831 940 aaPredicted RBP7.01□□□□□ -1.29
CLIP1-217ENST00000543205 POLR3GLQ9BT43 218 aa7.01□□□□□ -1.29
CLIP1-217ENST00000543205 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.01□□□□□ -1.29
CLIP1-217ENST00000543205 KRT28Q7Z3Y7 464 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 USP32Q8NFA0 1604 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 ACEP12821 1306 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 SLC10A3P09131 477 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 MCM6Q14566 821 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 TRAF7Q6Q0C0 670 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 THSD4Q6ZMP0 1018 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 NUTM1Q86Y26 1132 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 WNT2BQ93097 391 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 LRRC59Q96AG4 307 aaKnown RBP7□□□□□ -1.29
CLIP1-217ENST00000543205 CCDC97Q96F63 343 aaPredicted RBP7□□□□□ -1.29
CLIP1-217ENST00000543205 POM121Q96HA1 1249 aa7□□□□□ -1.29
CLIP1-217ENST00000543205 KIF1AQ12756 1690 aa6.99□□□□□ -1.29
CLIP1-217ENST00000543205 SOS2Q07890 1332 aaPredicted RBP6.99□□□□□ -1.29
CLIP1-217ENST00000543205 AHDC1Q5TGY3 1603 aaPredicted RBP6.99□□□□□ -1.29
CLIP1-217ENST00000543205 HDGFL2Q7Z4V5 671 aaPredicted RBP6.99□□□□□ -1.29
CLIP1-217ENST00000543205 FNBP4Q8N3X1 1017 aaPredicted RBP6.99□□□□□ -1.29
CLIP1-217ENST00000543205 SLC12A5Q9H2X9 1139 aa6.99□□□□□ -1.29
CLIP1-217ENST00000543205 SERPINA10Q9UK55 444 aa6.99□□□□□ -1.29
CLIP1-217ENST00000543205 PHLPP1O60346 1717 aa6.99□□□□□ -1.29
CLIP1-217ENST00000543205 RGPD8O14715 1765 aaPredicted RBP6.98□□□□□ -1.29
CLIP1-217ENST00000543205 POLR3AO14802 1390 aaPredicted RBP6.98□□□□□ -1.29
CLIP1-217ENST00000543205 NINLQ9Y2I6 1382 aa6.98□□□□□ -1.29
CLIP1-217ENST00000543205 TBC1D2Q9BYX2 928 aa6.98□□□□□ -1.29
CLIP1-217ENST00000543205 TERF2IPQ9NYB0 399 aa6.98□□□□□ -1.29
CLIP1-217ENST00000543205 ITSN1Q15811 1721 aa6.98□□□□□ -1.29
CLIP1-217ENST00000543205 BCAMP50895 628 aa6.98□□□□□ -1.29
CLIP1-217ENST00000543205 DIXDC1Q155Q3 683 aa6.98□□□□□ -1.29
CLIP1-217ENST00000543205 JCADQ9P266 1359 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 NHSL1Q5SYE7 1610 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 SOWAHBA6NEL2 793 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 CFHP08603 1231 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 SH3D19Q5HYK7 790 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 SPIRE2Q8WWL2 714 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 HPS5Q9UPZ3 1129 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 TOPAZ1Q8N9V7 1692 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 PXDNQ92626 1479 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 SBNO1A3KN83 1393 aa6.97□□□□□ -1.29
CLIP1-217ENST00000543205 C11orf95C9JLR9 678 aaPredicted RBP6.96□□□□□ -1.29
CLIP1-217ENST00000543205 GCGRP47871 477 aa6.96□□□□□ -1.29
CLIP1-217ENST00000543205 MYSM1Q5VVJ2 828 aa6.96□□□□□ -1.29
CLIP1-217ENST00000543205 PCMTD1Q96MG8 357 aaPredicted RBP6.96□□□□□ -1.29
CLIP1-217ENST00000543205 KIF7Q2M1P5 1343 aa6.96□□□□□ -1.3
CLIP1-217ENST00000543205 SPATA31A3Q5VYP0 1347 aa6.96□□□□□ -1.3
CLIP1-217ENST00000543205 COL16A1Q07092 1604 aaPredicted RBP6.96□□□□□ -1.3
CLIP1-217ENST00000543205 KTN1Q86UP2 1357 aaKnown RBP6.96□□□□□ -1.3
CLIP1-217ENST00000543205 KDM4AO75164 1064 aa6.96□□□□□ -1.3
CLIP1-217ENST00000543205 ARHGEF10O15013 1369 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 BRD4O60885 1362 aaPredicted RBP6.95□□□□□ -1.3
CLIP1-217ENST00000543205 USP6P35125 1406 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 CPSF1Q10570 1443 aaKnown RBP6.95□□□□□ -1.3
CLIP1-217ENST00000543205 TNS3Q68CZ2 1445 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 PPP4CP60510 307 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 KMT5BQ4FZB7 885 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 ABTB2Q8N961 1025 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 GOPCQ9HD26 462 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 POLR3EQ9NVU0 708 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 A0A1W2PP64 1363 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 PNPLA6Q8IY17 1366 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 ANKRD36BQ8N2N9 1353 aa6.95□□□□□ -1.3
CLIP1-217ENST00000543205 NUTM2BA6NNL0 878 aaPredicted RBP6.94□□□□□ -1.3
CLIP1-217ENST00000543205 NUTM2EB1AL46 878 aaPredicted RBP6.94□□□□□ -1.3
CLIP1-217ENST00000543205 ITGBL1O95965 494 aaPredicted RBP6.94□□□□□ -1.3
CLIP1-217ENST00000543205 SKIV2LQ15477 1246 aaKnown RBP6.94□□□□□ -1.3
CLIP1-217ENST00000543205 NUTM2GQ5VZR2 741 aa6.94□□□□□ -1.3
CLIP1-217ENST00000543205 NUTM2AQ8IVF1 878 aaPredicted RBP6.94□□□□□ -1.3
CLIP1-217ENST00000543205 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.94□□□□□ -1.3
CLIP1-217ENST00000543205 SPATA31A6Q5VVP1 1343 aa6.94□□□□□ -1.3
CLIP1-217ENST00000543205 TTC21BQ7Z4L5 1316 aa6.94□□□□□ -1.3
CLIP1-217ENST00000543205 CD163L1Q9NR16 1453 aa6.94□□□□□ -1.3
CLIP1-217ENST00000543205 CLK2P49760 499 aaKnown RBP6.94□□□□□ -1.3
CLIP1-217ENST00000543205 TSR3Q9UJK0 312 aaKnown RBP6.94□□□□□ -1.3
CLIP1-217ENST00000543205 TTC21AQ8NDW8 1320 aa6.94□□□□□ -1.3
CLIP1-217ENST00000543205 CCDC7Q96M83 1385 aa6.94□□□□□ -1.3
CLIP1-217ENST00000543205 USP46P62068 366 aa6.93□□□□□ -1.3
CLIP1-217ENST00000543205 MEX3CQ5U5Q3 659 aaKnown RBP6.93□□□□□ -1.3
CLIP1-217ENST00000543205 NLRP13Q86W25 1043 aa6.93□□□□□ -1.3
CLIP1-217ENST00000543205 PANK3Q9H999 370 aa6.93□□□□□ -1.3
CLIP1-217ENST00000543205 WASHC2AQ641Q2 1341 aa6.93□□□□□ -1.3
CLIP1-217ENST00000543205 EDC4Q6P2E9 1401 aaKnown RBP6.93□□□□□ -1.3
CLIP1-217ENST00000543205 SRCAPQ6ZRS2 3230 aa6.93□□□□□ -1.3
CLIP1-217ENST00000543205 MOXD2PA6NHM9 499 aa6.93□□□□□ -1.3
CLIP1-217ENST00000543205 UNCXA6NJT0 531 aa6.93□□□□□ -1.3
CLIP1-217ENST00000543205 SSH2Q76I76 1423 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 TRPM3Q9HCF6 1732 aaPredicted RBP6.92□□□□□ -1.3
CLIP1-217ENST00000543205 HOXA2O43364 376 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 NDUFV2P19404 249 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 BRD2P25440 801 aaKnown RBP6.92□□□□□ -1.3
CLIP1-217ENST00000543205 FUT2Q10981 343 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 RIC3Q7Z5B4 369 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 NME9Q86XW9 330 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 CABLES1Q8TDN4 633 aa6.92□□□□□ -1.3
CLIP1-217ENST00000543205 PRR14Q9BWN1 585 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms