RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 NOP2P46087 812 aaKnown RBP13.48□□□□□ -0.25
CDH3-203ENST00000542274 ZKSCAN8Q15776 578 aaPredicted RBP13.48□□□□□ -0.25
CDH3-203ENST00000542274 C1orf167Q5SNV9 1468 aa13.48□□□□□ -0.25
CDH3-203ENST00000542274 ATF3P18847 181 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 TDO2P48775 406 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 C8orf34Q49A92 452 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 ZKSCAN2Q63HK3 967 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 SULT6B1Q6IMI4 303 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 ZNF710Q8N1W2 664 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 CALCOCO1Q9P1Z2 691 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 TRERF1Q96PN7 1200 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 TMX1Q9H3N1 280 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 DONSONQ9NYP3 566 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 MRVI1Q9Y6F6 885 aa13.47□□□□□ -0.25
CDH3-203ENST00000542274 AMPHP49418 695 aa13.46□□□□□ -0.25
CDH3-203ENST00000542274 DZIP1LQ8IYY4 767 aaKnown RBP13.46□□□□□ -0.25
CDH3-203ENST00000542274 RSPH14Q9UHP6 348 aa13.46□□□□□ -0.25
CDH3-203ENST00000542274 ZNF853P0CG23 659 aa13.46□□□□□ -0.26
CDH3-203ENST00000542274 MVPQ14764 893 aaKnown RBP13.46□□□□□ -0.26
CDH3-203ENST00000542274 RINLQ6ZS11 566 aa13.46□□□□□ -0.26
CDH3-203ENST00000542274 PIK3R5Q8WYR1 880 aa13.46□□□□□ -0.26
CDH3-203ENST00000542274 FOXD4L6Q3SYB3 417 aaPredicted RBP13.45□□□□□ -0.26
CDH3-203ENST00000542274 FOXD4L3Q6VB84 417 aaPredicted RBP13.45□□□□□ -0.26
CDH3-203ENST00000542274 ITPRIPQ8IWB1 547 aa13.45□□□□□ -0.26
CDH3-203ENST00000542274 MST1RQ04912 1400 aa13.45□□□□□ -0.26
CDH3-203ENST00000542274 MFAP1P55081 439 aaKnown RBP13.45□□□□□ -0.26
CDH3-203ENST00000542274 NECTIN2Q92692 538 aa13.45□□□□□ -0.26
CDH3-203ENST00000542274 LTV1Q96GA3 475 aaPredicted RBP13.45□□□□□ -0.26
CDH3-203ENST00000542274 MBIPQ9NS73 344 aa13.45□□□□□ -0.26
CDH3-203ENST00000542274 LTN1O94822 1766 aa13.44□□□□□ -0.26
CDH3-203ENST00000542274 DHX16O60231 1041 aaKnown RBP13.44□□□□□ -0.26
CDH3-203ENST00000542274 KRT24Q2M2I5 525 aa13.44□□□□□ -0.26
CDH3-203ENST00000542274 TMEM57Q8N5G2 664 aa13.44□□□□□ -0.26
CDH3-203ENST00000542274 IL16Q14005 1332 aa13.44□□□□□ -0.26
CDH3-203ENST00000542274 MPHOSPH10O00566 681 aaKnown RBP13.44□□□□□ -0.26
CDH3-203ENST00000542274 BECN1Q14457 450 aa13.44□□□□□ -0.26
CDH3-203ENST00000542274 ISY1Q9ULR0 285 aaKnown RBP13.44□□□□□ -0.26
CDH3-203ENST00000542274 DLG5Q8TDM6 1919 aa13.44□□□□□ -0.26
CDH3-203ENST00000542274 IPO8O15397 1037 aaKnown RBP13.43□□□□□ -0.26
CDH3-203ENST00000542274 ATF7IPQ6VMQ6 1270 aa13.43□□□□□ -0.26
CDH3-203ENST00000542274 KRT28Q7Z3Y7 464 aa13.43□□□□□ -0.26
CDH3-203ENST00000542274 RBM28Q9NW13 759 aaKnown RBP13.43□□□□□ -0.26
CDH3-203ENST00000542274 BSDC1Q9NW68 430 aaPredicted RBP13.43□□□□□ -0.26
CDH3-203ENST00000542274 MCM10Q7L590 875 aa13.43□□□□□ -0.26
CDH3-203ENST00000542274 GABPB1Q06547 395 aaPredicted RBP13.42□□□□□ -0.26
CDH3-203ENST00000542274 ICE2Q659A1 982 aa13.42□□□□□ -0.26
CDH3-203ENST00000542274 FAM177A1Q8N128 213 aaPredicted RBP13.42□□□□□ -0.26
CDH3-203ENST00000542274 C8orf58Q8NAV2 365 aa13.42□□□□□ -0.26
CDH3-203ENST00000542274 SBNO1A3KN83 1393 aa13.42□□□□□ -0.26
CDH3-203ENST00000542274 FLT4P35916 1363 aa13.42□□□□□ -0.26
CDH3-203ENST00000542274 POLD1P28340 1107 aa13.42□□□□□ -0.26
CDH3-203ENST00000542274 FAM161AQ3B820 660 aa13.42□□□□□ -0.26
CDH3-203ENST00000542274 TRPM3Q9HCF6 1732 aaPredicted RBP13.42□□□□□ -0.26
CDH3-203ENST00000542274 USP54Q70EL1 1684 aa13.42□□□□□ -0.26
CDH3-203ENST00000542274 MSH6P52701 1360 aa13.42□□□□□ -0.26
CDH3-203ENST00000542274 JARID2Q92833 1246 aaPredicted RBP13.41□□□□□ -0.26
CDH3-203ENST00000542274 CCDC189A1A4V9 331 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 VAMP4O75379 141 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 SEC24BO95487 1268 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 HOXC9P31274 260 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 CCDC173Q0VFZ6 552 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 TSHZ1Q6ZSZ6 1077 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 PDZRN3Q9UPQ7 1066 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 KIF1AQ12756 1690 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 SLFN14P0C7P3 912 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 BIRC2Q13490 618 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 CSPP1Q1MSJ5 1256 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 ITFG2Q969R8 447 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 TOMM22Q9NS69 142 aa13.41□□□□□ -0.26
CDH3-203ENST00000542274 RGPD1P0DJD0 1748 aa13.4□□□□□ -0.26
CDH3-203ENST00000542274 HSP90AB4PQ58FF6 505 aa13.4□□□□□ -0.26
CDH3-203ENST00000542274 MIS18AQ9NYP9 233 aa13.4□□□□□ -0.26
CDH3-203ENST00000542274 GUCY2CP25092 1073 aa13.4□□□□□ -0.27
CDH3-203ENST00000542274 MTA1Q13330 715 aa13.4□□□□□ -0.27
CDH3-203ENST00000542274 CADPS2Q86UW7 1296 aa13.4□□□□□ -0.27
CDH3-203ENST00000542274 TSC1Q92574 1164 aa13.4□□□□□ -0.27
CDH3-203ENST00000542274 USHBP1Q8N6Y0 703 aa13.39□□□□□ -0.27
CDH3-203ENST00000542274 C1orf115Q9H7X2 142 aa13.39□□□□□ -0.27
CDH3-203ENST00000542274 NFAT5O94916 1531 aa13.39□□□□□ -0.27
CDH3-203ENST00000542274 KIF1CO43896 1103 aaKnown RBP13.39□□□□□ -0.27
CDH3-203ENST00000542274 ZC3H12AQ5D1E8 599 aaKnown RBP13.39□□□□□ -0.27
CDH3-203ENST00000542274 CTR9Q6PD62 1173 aa13.39□□□□□ -0.27
CDH3-203ENST00000542274 EYA1Q99502 592 aa13.39□□□□□ -0.27
CDH3-203ENST00000542274 NOL10Q9BSC4 688 aaKnown RBP13.39□□□□□ -0.27
CDH3-203ENST00000542274 BRMS1Q9HCU9 246 aa13.39□□□□□ -0.27
CDH3-203ENST00000542274 SUFUQ9UMX1 484 aa13.39□□□□□ -0.27
CDH3-203ENST00000542274 FAM212AQ96EL1 285 aa13.38□□□□□ -0.27
CDH3-203ENST00000542274 SLKQ9H2G2 1235 aaPredicted RBP13.38□□□□□ -0.27
CDH3-203ENST00000542274 TWISTNBQ3B726 338 aaPredicted RBP13.38□□□□□ -0.27
CDH3-203ENST00000542274 MYRIPQ8NFW9 859 aa13.38□□□□□ -0.27
CDH3-203ENST00000542274 PPP1R9BQ96SB3 815 aa13.38□□□□□ -0.27
CDH3-203ENST00000542274 IFT57Q9NWB7 429 aa13.38□□□□□ -0.27
CDH3-203ENST00000542274 RGPD2P0DJD1 1756 aa13.38□□□□□ -0.27
CDH3-203ENST00000542274 DCCP43146 1447 aa13.38□□□□□ -0.27
CDH3-203ENST00000542274 GNAI1P63096 354 aa13.37□□□□□ -0.27
CDH3-203ENST00000542274 LRCH2Q5VUJ6 765 aa13.37□□□□□ -0.27
CDH3-203ENST00000542274 ANKRD23Q86SG2 305 aa13.37□□□□□ -0.27
CDH3-203ENST00000542274 MRPL50Q8N5N7 158 aaKnown RBP13.37□□□□□ -0.27
CDH3-203ENST00000542274 CABLES1Q8TDN4 633 aa13.37□□□□□ -0.27
CDH3-203ENST00000542274 UPF2Q9HAU5 1272 aaKnown RBP13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms